Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.0e-162 576.6 288 100.0
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 4.4e-153 544.7 279 97.5
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 6.6e-141 504.2 254 99.6
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 6.2e-139 497.7 254 98.4
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 9.8e-137 490.3 254 98.0
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 8.6e-133 477.2 254 94.1
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 9.2e-119 430.6 249 85.5
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 1.1e-114 417.2 254 81.9
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.2e-110 403.7 248 80.2
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 8.7e-109 397.5 259 76.8
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 2.1e-107 392.9 248 78.2
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 2.8e-107 392.5 255 76.9
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 1.4e-106 390.2 258 76.0
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 4.0e-106 388.7 269 72.9
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 1.2e-105 387.1 253 76.3
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.5e-105 386.7 245 77.6
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 7.6e-105 384.4 253 75.5
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 9.9e-105 384.0 253 75.1
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 1.7e-104 383.3 252 75.0
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 3.8e-104 382.1 252 75.0
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 1.1e-103 380.6 257 73.9
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 1.4e-103 380.2 255 74.5
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 7.1e-103 377.9 255 72.5
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 1.6e-102 376.7 274 67.5
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 3.5e-102 375.6 263 70.0
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 2.3e-101 372.9 253 73.5
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 1.1e-100 370.5 257 72.4
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 1.9e-100 369.8 254 73.2
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 2.5e-100 369.4 235 75.3
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 2.5e-100 369.4 255 71.8
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 4.3e-100 368.6 255 71.8
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 9.6e-100 367.5 254 72.8
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 1.6e-99 366.7 256 71.5
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 4.8e-99 365.2 257 70.4
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 4.8e-99 365.2 225 78.2
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 6.2e-99 364.8 253 72.7
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 8.1e-99 364.4 257 70.4
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 1.1e-98 364.0 252 72.2
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 1.4e-98 363.6 253 71.9
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 2.4e-98 362.8 254 71.3
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 4.0e-98 362.1 254 70.1
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 1.2e-97 360.5 281 65.8
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 1.2e-97 360.5 224 77.7
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 2.0e-97 359.8 269 65.4
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 2.0e-97 359.8 251 70.9
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 2.0e-97 359.8 255 70.2
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 2.6e-97 359.4 252 71.0
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 5.8e-97 358.2 248 71.8
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 7.6e-97 357.8 254 71.3
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 7.6e-97 357.8 257 68.5
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 9.9e-97 357.5 248 69.8
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 6.4e-96 354.8 224 75.9
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 4.2e-95 352.1 238 73.1
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 4.2e-95 352.1 219 78.5
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 4.2e-95 352.1 271 67.5
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 5.5e-95 351.7 256 70.3
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 9.3e-95 350.9 253 70.4
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 9.3e-95 350.9 224 75.4
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 1.2e-94 350.5 223 75.8
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 2.1e-94 349.7 253 70.0
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 2.1e-94 349.7 246 73.2
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 2.7e-94 349.4 252 71.0
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 2.7e-94 349.4 220 76.8
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 3.5e-94 349.0 253 68.8
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 4.6e-94 348.6 253 69.6
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 6.0e-94 348.2 225 74.2
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.0e-93 347.4 253 69.6
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 1.0e-93 347.4 255 68.6
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 1.8e-93 346.7 223 74.0
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 2.3e-93 346.3 225 76.0
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 2.3e-93 346.3 271 67.2
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 3.0e-93 345.9 231 72.3
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 5.1e-93 345.1 227 73.1
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 1.9e-92 343.2 257 65.4
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 2.5e-92 342.8 257 66.1
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 4.3e-92 342.0 223 74.0
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 5.6e-92 341.7 258 65.9
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 1.6e-91 340.1 234 71.4
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 2.1e-91 339.7 245 67.8
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 2.8e-91 339.3 234 71.8
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 6.9e-90 334.7 258 64.7
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 6.9e-90 334.7 237 70.0
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 6.9e-90 334.7 222 71.2
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 4.5e-89 332.0 221 75.1
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 7.6e-89 331.3 224 73.2
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 1.3e-88 330.5 227 70.9
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 1.7e-88 330.1 258 63.2
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 1.7e-88 330.1 231 70.1
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 1.7e-88 330.1 231 70.1
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 3.8e-88 328.9 226 73.0
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 6.5e-88 328.2 229 70.3
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 8.4e-88 327.8 260 65.4
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 8.4e-88 327.8 238 69.7
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 8.4e-88 327.8 226 70.8
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 1.1e-87 327.4 235 68.9
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 1.4e-87 327.0 225 72.4
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 9.3e-87 324.3 260 64.6
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 1.2e-86 323.9 235 68.1
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 1.2e-86 323.9 235 68.1
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 2.1e-86 323.2 224 68.8
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 2.7e-86 322.8 260 63.8
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 4.6e-86 322.0 233 68.2
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 1.0e-85 320.9 227 70.9
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 8.7e-85 317.8 211 70.1
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 4.1e-82 308.9 244 62.3
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 4.1e-82 308.9 266 59.8
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 6.9e-82 308.1 253 60.1
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 1.2e-81 307.4 216 69.4
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 8.5e-80 301.2 220 65.5
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 1.6e-78 297.0 188 75.0
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 8.7e-77 291.2 210 65.2
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 2.5e-76 289.7 209 66.5
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 9.7e-76 287.7 243 57.2
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 2.6e-73 279.6 218 61.0
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 1.0e-72 277.7 258 57.0
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 1.1e-71 274.2 232 56.5
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 2.5e-71 273.1 208 62.0
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 7.2e-71 271.6 228 60.5
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 1.6e-62 243.8 185 64.9
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 2.6e-57 226.5 160 69.4
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 8.2e-51 204.9 138 73.9
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 7.2e-47 191.8 175 57.1
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 5.2e-45 185.7 213 45.1
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 3.4e-44 183.0 144 63.2
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 1.3e-35 154.5 104 71.2
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 5.0e-32 142.5 170 42.9
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 1.1e-31 141.4 245 37.6
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 2.4e-26 123.6 98 63.3
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 2.3e-13 80.5 64 59.4
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 2.4e-10 70.5 52 61.5
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 1.7e-08 64.3 139 32.4
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 1.7e-08 64.3 158 29.1
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 3.0e-08 63.5 105 38.1
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 3.9e-08 63.2 143 31.5
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 3.9e-08 63.2 139 33.1
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 5.1e-08 62.8 170 30.0
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 6.6e-08 62.4 139 30.9
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 8.6e-08 62.0 147 29.9
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 8.6e-08 62.0 137 32.1
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 1.5e-07 61.2 151 30.5
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 1.9e-07 60.8 105 37.1
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 2.5e-07 60.5 139 30.2
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 2.5e-07 60.5 139 30.2
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 2.5e-07 60.5 139 29.5
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 2.5e-07 60.5 133 31.6
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 3.3e-07 60.1 139 29.5
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 3.3e-07 60.1 140 30.7
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 3.3e-07 60.1 140 30.7
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 4.3e-07 59.7 139 30.2
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 4.3e-07 59.7 140 30.7
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 4.3e-07 59.7 139 30.9
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 4.3e-07 59.7 172 27.9
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 4.3e-07 59.7 115 36.5
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 5.6e-07 59.3 153 30.1
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 7.3e-07 58.9 138 28.3
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 7.3e-07 58.9 175 28.6
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 9.5e-07 58.5 139 32.4
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 9.5e-07 58.5 213 26.8
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 1.2e-06 58.2 139 29.5
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 1.2e-06 58.2 155 29.7
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 2.1e-06 57.4 185 27.0
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 2.1e-06 57.4 154 30.5
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 2.8e-06 57.0 126 29.4
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 2.8e-06 57.0 124 32.3
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 3.6e-06 56.6 140 30.7
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 3.6e-06 56.6 105 35.2
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 4.7e-06 56.2 145 30.3
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 4.7e-06 56.2 140 28.6
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 4.7e-06 56.2 175 26.3
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 6.2e-06 55.8 144 31.9
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 8.1e-06 55.5 138 30.4
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 8.1e-06 55.5 137 30.7
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 8.1e-06 55.5 175 26.3


User provided reference genes

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