Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 4.3e-50 201.1 103 100.0
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 4.3e-50 201.1 103 100.0
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 4.3e-50 201.1 103 100.0
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 4.0e-48 194.5 103 95.1
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 5.8e-47 190.7 103 94.2
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 7.5e-47 190.3 103 94.2
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 6.8e-32 140.6 107 70.1
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 1.3e-19 99.8 84 61.9
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.7e-19 99.4 99 56.6
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 1.5e-18 96.3 109 52.3
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 3.3e-18 95.1 107 51.4
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 1.3e-17 93.2 106 53.8
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 1.6e-17 92.8 108 52.8
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 3.6e-17 91.7 101 51.5
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 6.2e-17 90.9 108 51.9
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 8.1e-17 90.5 106 53.8
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 2.4e-16 89.0 106 51.9
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 4.0e-16 88.2 85 63.5
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 5.3e-16 87.8 108 52.8
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 9.0e-16 87.0 109 47.7
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 1.2e-15 86.7 106 50.0
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 1.5e-15 86.3 113 47.8
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 5.8e-15 84.3 108 48.1
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 5.8e-15 84.3 108 51.9
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 5.8e-15 84.3 106 48.1
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 1.7e-14 82.8 100 51.0
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 1.7e-14 82.8 108 47.2
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 1.7e-14 82.8 109 50.5
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 2.9e-14 82.0 98 50.0
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 3.8e-14 81.6 82 58.5
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 4.9e-14 81.3 107 45.8
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 8.4e-14 80.5 104 51.9
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 1.1e-13 80.1 93 50.5
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 1.1e-13 80.1 108 47.2
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 1.4e-13 79.7 73 57.5
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 4.2e-13 78.2 102 49.0
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 5.4e-13 77.8 108 50.0
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 7.1e-13 77.4 104 51.0
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.2e-12 76.6 104 50.0
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 1.6e-12 76.3 107 46.7
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.1e-12 75.9 101 50.5
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 2.1e-12 75.9 105 45.7
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.7e-12 75.5 101 50.5
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 2.7e-12 75.5 101 50.5
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 3.5e-12 75.1 93 48.4
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 7.8e-12 73.9 107 45.8
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 1.3e-11 73.2 82 46.3
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 1.3e-11 73.2 85 51.8
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 1.7e-11 72.8 107 46.7
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 3.9e-11 71.6 105 42.9
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 3.9e-11 71.6 98 50.0
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 8.7e-11 70.5 108 43.5
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 8.7e-11 70.5 93 44.1
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 1.5e-10 69.7 109 38.5
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 1.9e-10 69.3 106 45.3
Sopen06g031390 Solanum pennellii HOM05D039995 ORTHO05D007271 7.3e-10 67.4 70 48.6
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 4.8e-09 64.7 103 39.8
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 1.4e-08 63.2 56 53.6
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 3.1e-08 62.0 111 41.4
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 5.3e-08 61.2 69 43.5
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 6.9e-08 60.8 78 46.2
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 9.0e-08 60.5 109 34.9
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 1.5e-07 59.7 99 45.5
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.5e-07 59.7 108 37.0
Lsat_1_v5_gn_6_43600 Lactuca sativa HOM05D007861 ORTHO05D007271 2.6e-07 58.9 55 52.7
Nitab4.5_0000106g0370 Nicotiana tabacum HOM05D039995 ORTHO05D007271 2.6e-07 58.9 87 37.9
Hma1.2p1_0344F.1_g131140 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 4.5e-07 58.2 71 46.5
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 1.7e-06 56.2 107 36.4
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 2.2e-06 55.8 93 39.8
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 2.9e-06 55.5 107 40.2
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 3.8e-06 55.1 101 40.6
Sp4g10850 Schrenkiella parvula HOM05D014739 ORTHO05D007271 4.9e-06 54.7 69 44.9
TAR623G0050 Trochodendron aralioides HOM05D007861 ORTHO05D007271 4.9e-06 54.7 90 41.1
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 6.4e-06 54.3 60 41.7


User provided reference genes

Program Settings