Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.2e-209 733.0 391 100.0
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 7.7e-209 730.3 391 99.5
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 4.7e-190 667.9 402 90.5
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 2.9e-163 578.9 392 82.1
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 2.3e-136 489.6 405 69.6
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 4.3e-135 485.3 465 62.6
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 6.2e-134 481.5 393 69.0
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 4.9e-131 471.9 397 67.8
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 1.3e-126 457.2 398 64.8
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 5.8e-124 448.4 389 62.2
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 4.9e-123 445.3 397 64.2
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 6.4e-123 444.9 389 63.5
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 6.4e-123 444.9 389 65.3
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 3.2e-122 442.6 389 62.5
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 1.6e-121 440.3 394 63.7
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 3.5e-121 439.1 395 60.8
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 4.6e-121 438.7 394 61.4
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 7.9e-121 438.0 389 62.2
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.3e-120 437.2 392 60.5
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 1.4e-117 427.2 398 59.0
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 3.1e-117 426.0 395 62.8
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 4.0e-117 425.6 459 56.0
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 1.2e-116 424.1 391 63.2
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 9.9e-116 421.0 388 61.9
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.7e-115 420.2 378 64.0
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 2.2e-115 419.9 382 58.9
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 2.2e-115 419.9 382 58.9
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 3.8e-115 419.1 380 62.6
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 4.9e-115 418.7 388 59.8
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 1.1e-114 417.5 398 59.8
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 3.2e-114 416.0 381 61.2
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 2.1e-113 413.3 395 59.2
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 2.1e-113 413.3 389 61.7
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 4.6e-113 412.1 391 59.3
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 1.3e-112 410.6 406 59.6
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 2.3e-112 409.8 387 59.2
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 2.3e-112 409.8 450 53.1
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 4.3e-111 405.6 407 61.2
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 5.6e-111 405.2 392 57.4
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 5.6e-111 405.2 387 60.5
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 7.4e-111 404.8 381 60.1
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 1.3e-110 404.1 380 58.4
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 1.3e-110 404.1 396 59.6
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 4.8e-110 402.1 392 58.7
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 1.4e-109 400.6 364 64.8
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 1.8e-109 400.2 371 59.6
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 1.8e-109 400.2 460 53.7
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 1.5e-108 397.1 392 59.2
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 5.8e-108 395.2 383 60.3
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 7.6e-108 394.8 383 60.3
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 1.3e-107 394.0 389 57.8
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.3e-107 394.0 392 55.6
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 1.3e-107 394.0 397 59.7
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 2.2e-107 393.3 379 60.2
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 2.9e-107 392.9 382 58.9
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 3.8e-107 392.5 389 56.6
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 3.8e-107 392.5 394 56.3
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 6.5e-107 391.7 364 58.8
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 6.5e-107 391.7 385 60.0
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 8.4e-107 391.3 389 57.8
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 1.1e-106 391.0 391 60.6
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 1.4e-106 390.6 364 62.1
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 7.1e-106 388.3 398 56.8
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 7.1e-106 388.3 390 59.7
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 9.3e-106 387.9 389 54.2
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 1.2e-105 387.5 382 55.2
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 2.1e-105 386.7 369 61.0
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 4.6e-105 385.6 390 58.2
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 4.6e-105 385.6 423 52.5
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 7.9e-105 384.8 392 57.7
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.0e-104 384.4 391 54.2
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 1.0e-104 384.4 395 54.4
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 1.0e-104 384.4 398 57.0
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 2.3e-104 383.3 385 59.0
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 6.7e-104 381.7 394 57.6
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 1.9e-103 380.2 402 57.5
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 5.7e-103 378.6 378 58.5
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 9.6e-103 377.9 402 55.5
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 1.6e-102 377.1 380 57.4
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 8.2e-102 374.8 391 57.8
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 9.0e-101 371.3 393 58.0
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 1.5e-100 370.5 389 52.7
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 2.0e-100 370.2 391 53.5
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 2.9e-99 366.3 363 59.8
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 1.4e-98 364.0 377 54.1
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 9.3e-98 361.3 363 55.6
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 9.3e-98 361.3 353 60.3
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 2.7e-97 359.8 393 50.6
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 3.0e-96 356.3 390 52.1
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 5.7e-95 352.1 418 50.0
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 5.7e-95 352.1 398 56.0
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 2.2e-94 350.1 380 51.1
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 2.8e-94 349.7 417 49.4
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 5.3e-93 345.5 384 52.6
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 9.0e-93 344.7 396 55.8
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 3.4e-92 342.8 395 49.4
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 5.9e-92 342.0 338 58.9
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 1.3e-91 340.9 332 59.9
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 1.7e-91 340.5 374 50.3
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 7.2e-90 335.1 464 47.4
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 1.8e-88 330.5 619 39.6
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.5e-84 317.4 166 95.8
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 8.5e-83 311.6 326 52.8
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 6.3e-78 295.4 378 47.1
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 1.6e-73 280.8 386 45.6
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 3.1e-61 240.0 145 80.7
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 1.2e-55 221.5 286 50.0
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 7.5e-55 218.8 135 77.0
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 1.8e-48 197.6 388 35.3
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 1.8e-45 187.6 381 31.8
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 2.4e-45 187.2 384 32.8
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 5.4e-45 186.0 354 35.6
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 2.1e-41 174.1 112 74.1
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 1.0e-40 171.8 383 32.6
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 1.2e-28 131.7 228 33.8
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 3.5e-28 130.2 100 65.0
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 5.6e-26 122.9 182 38.5
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 6.2e-25 119.4 233 39.9
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 6.4e-22 109.4 81 67.9
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 1.1e-21 108.6 209 32.1
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 1.0e-19 102.1 58 84.5
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 6.6e-19 99.4 64 75.0
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 2.1e-17 94.4 178 34.3
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 1.4e-16 91.7 60 71.7
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 3.8e-14 83.6 59 71.2


User provided reference genes

Program Settings