Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3685 Fragaria x ananassa HOM05D006765 ORTHO05D008554 3.8e-185 651.4 330 100.0
FvH4_3g42180 Fragaria vesca HOM05D006765 ORTHO05D008554 8.2e-180 633.6 330 97.9
FAN25G2031 Fragaria x ananassa HOM05D006765 ORTHO05D008554 2.5e-176 622.1 344 93.9
FAN21G2411 Fragaria x ananassa HOM05D006765 ORTHO05D008554 8.0e-167 590.5 349 89.1
RcHm_v2.0_Chr5g0075451 Rosa chinensis HOM05D006765 ORTHO05D008554 8.0e-159 563.9 330 87.3
FAN16G0764 Fragaria x ananassa HOM05D006765 ORTHO05D008554 1.2e-130 470.3 249 96.8
Prupe.6G029100 Prunus persica HOM05D006765 ORTHO05D008554 1.5e-112 410.2 341 66.9
Gorai.009G452100 Gossypium raimondii HOM05D006765 ORTHO05D008554 1.3e-84 317.4 338 54.4
Manes.01G004100 Manihot esculenta HOM05D006765 ORTHO05D008554 1.3e-84 317.4 340 57.1
Duzib213G0912 Durio zibethinus HOM05D006765 ORTHO05D008554 3.8e-84 315.8 340 53.8
Gohir.A04G004500 Gossypium hirsutum HOM05D006765 ORTHO05D008554 1.1e-83 314.3 338 54.7
Gohir.D05G385400 Gossypium hirsutum HOM05D006765 ORTHO05D008554 2.1e-82 310.1 338 53.6
QL08p002606 Quercus lobata HOM05D006765 ORTHO05D008554 3.0e-81 306.2 341 54.0
CSS0016155 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 8.8e-81 304.7 364 51.6
Actinidia03654 Actinidia chinensis HOM05D006765 ORTHO05D008554 1.3e-79 300.8 340 52.6
CSS0046328 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 1.7e-79 300.4 364 51.1
COL.COLO4_07747 Corchorus olitorius HOM05D006765 ORTHO05D008554 1.7e-79 300.4 339 50.4
Lj1A895T73 Lonicera japonica HOM05D006765 ORTHO05D008554 1.1e-78 297.7 346 52.0
GSVIVG01014751001 Vitis vinifera HOM05D006765 ORTHO05D008554 1.2e-77 294.3 344 52.0
TWI38G1422 Tripterygium wilfordii HOM05D006765 ORTHO05D008554 2.6e-77 293.1 346 50.9
Cfa021898 Carpinus fangiana HOM05D006765 ORTHO05D008554 3.4e-77 292.7 335 52.2
Dinv40889 Davidia involucrata HOM05D006765 ORTHO05D008554 1.7e-76 290.4 383 48.3
TAR629G2312 Trochodendron aralioides HOM05D006765 ORTHO05D008554 2.9e-76 289.7 354 51.4
CANSAT11G0072 Cannabis sativa HOM05D006765 ORTHO05D008554 6.5e-76 288.5 348 50.6
Ciclev10008671m.g Citrus clementina HOM05D006765 ORTHO05D008554 8.5e-76 288.1 381 45.4
Cpa.g.sc12.101 Carica papaya HOM05D006765 ORTHO05D008554 1.1e-75 287.7 333 50.2
Sabra16G0317200 Salix brachista HOM05D006765 ORTHO05D008554 1.4e-73 280.8 382 46.1
MELO3C013197.2 Cucumis melo HOM05D006765 ORTHO05D008554 2.6e-72 276.6 330 51.8
Potri.001G467400 Populus trichocarpa HOM05D006765 ORTHO05D008554 2.8e-71 273.1 382 45.5
ClCG09G021580 Citrullus lanatus HOM05D006765 ORTHO05D008554 8.2e-71 271.6 350 50.3
CsaV3_7G021520 Cucumis sativus L. HOM05D006765 ORTHO05D008554 1.1e-70 271.2 337 50.1
Eucgr.F02021 Eucalyptus grandis HOM05D006765 ORTHO05D008554 3.5e-69 266.2 345 47.2
Solyc07g065870.3 Solanum lycopersicum HOM05D006765 ORTHO05D008554 2.9e-68 263.1 318 47.2
Sopen07g034060 Solanum pennellii HOM05D006765 ORTHO05D008554 2.9e-68 263.1 318 47.5
CiPaw.11G207500 Carya illinoinensis HOM05D006765 ORTHO05D008554 3.8e-68 262.7 317 53.3
PGSC0003DMG400022157 Solanum tuberosum HOM05D006765 ORTHO05D008554 5.0e-68 262.3 319 48.3
LjContig00081g0022778 Lotus japonicus HOM05D006765 ORTHO05D008554 8.5e-68 261.5 337 49.6
CAN.G623.40 Capsicum annuum HOM05D006765 ORTHO05D008554 1.9e-67 260.4 324 47.2
Nitab4.5_0003130g0010 Nicotiana tabacum HOM05D006765 ORTHO05D008554 2.5e-67 260.0 325 47.4
Nn1g07719 Nelumbo nucifera HOM05D006765 ORTHO05D008554 9.4e-67 258.1 355 47.3
Sed0017860 Sechium edule HOM05D006765 ORTHO05D008554 1.2e-66 257.7 318 50.6
SGA_v2.0_scaffold168G38579 Striga asiatica HOM05D006765 ORTHO05D008554 3.6e-66 256.1 339 46.0
Oeu005464.1 Olea europaea HOM05D006765 ORTHO05D008554 6.1e-66 255.4 340 45.6
Peaxi162Scf00232g00025 Petunia axillaris HOM05D006765 ORTHO05D008554 5.2e-65 252.3 325 48.9
Migut.M01623 Erythranthe guttata HOM05D006765 ORTHO05D008554 6.7e-65 251.9 314 47.1
Glyma.02G302700 Glycine max HOM05D006765 ORTHO05D008554 2.6e-64 250.0 333 48.6
TPR.G1253 Trifolium pratense HOM05D006765 ORTHO05D008554 5.7e-64 248.8 338 46.7
PGR083G0751 Punica granatum HOM05D006765 ORTHO05D008554 9.7e-64 248.1 370 44.3
Haze_09874 Corylus avellana HOM05D006765 ORTHO05D008554 4.8e-63 245.7 398 44.0
Phvul.008G281600 Phaseolus vulgaris HOM05D006765 ORTHO05D008554 1.8e-62 243.8 333 45.0
Hma1.2p1_1094F.1_g256340 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 4.1e-62 242.7 178 69.1
Rhsim04G0010100 Rhododendron simsii HOM05D006765 ORTHO05D008554 4.1e-62 242.7 242 57.0
MBI15_g19869_MAGBIO Magnolia biondii HOM05D006765 ORTHO05D008554 7.0e-62 241.9 332 46.1
Glyma.14G011300 Glycine max HOM05D006765 ORTHO05D008554 9.1e-62 241.5 330 47.0
Psat2g006160 Pisum sativum HOM05D006765 ORTHO05D008554 9.1e-62 241.5 337 45.4
THA.LOC104801913 Tarenaya hassleriana HOM05D006765 ORTHO05D008554 4.5e-61 239.2 341 42.8
Lsat_1_v5_gn_7_114860 Lactuca sativa HOM05D006765 ORTHO05D008554 3.8e-60 236.1 354 42.4
HanXRQChr15g0488021 Helianthus annuus HOM05D006765 ORTHO05D008554 1.5e-59 234.2 370 42.7
Medtr5g096560 Medicago truncatula HOM05D006765 ORTHO05D008554 1.9e-59 233.8 337 44.5
CARHR087860 Cardamine hirsuta HOM05D006765 ORTHO05D008554 9.4e-59 231.5 331 42.9
Nitab4.5_0000152g0290 Nicotiana tabacum HOM05D006765 ORTHO05D008554 9.4e-59 231.5 306 47.4
SalBow8G5524 Salvia bowleyana HOM05D006765 ORTHO05D008554 2.7e-58 229.9 336 43.8
Aqoxy2G01345 Aquilegia oxysepala HOM05D006765 ORTHO05D008554 3.6e-58 229.6 333 44.4
ECA236G1773 Erigeron canadensis HOM05D006765 ORTHO05D008554 6.1e-58 228.8 356 41.0
Prupe.6G082900 Prunus persica HOM05D006765 ORTHO05D008554 1.4e-57 227.6 160 73.1
Ah.08g214160 Amaranthus hybridus HOM05D006765 ORTHO05D008554 1.2e-56 224.6 367 39.0
arahy.Tifrunner.gnm1.ann1.C7HE0M Arachis hypogaea HOM05D006765 ORTHO05D008554 1.2e-56 224.6 340 43.8
Ca_06420_v3 Cicer arietinum L. HOM05D006765 ORTHO05D008554 1.2e-56 224.6 301 47.8
VMungo0647G1474 Vigna mungo HOM05D006765 ORTHO05D008554 2.0e-56 223.8 391 39.4
Lalb_Chr04g0247731 Lupinus albus HOM05D006765 ORTHO05D008554 2.6e-56 223.4 328 44.2
Cc05_g15360 Coffea canephora HOM05D006765 ORTHO05D008554 9.8e-56 221.5 231 55.4
Carub.0003s1262 Capsella rubella HOM05D006765 ORTHO05D008554 2.8e-55 219.9 333 41.1
Sp3g11440 Schrenkiella parvula HOM05D006765 ORTHO05D008554 2.8e-55 219.9 366 39.9
AT3G13226 Arabidopsis thaliana HOM05D006765 ORTHO05D008554 4.8e-55 219.2 373 37.8
AL3G25050 Arabidopsis lyrata HOM05D006765 ORTHO05D008554 1.1e-54 218.0 377 39.5
BcaB04g21007 Brassica carinata HOM05D006765 ORTHO05D008554 2.4e-54 216.9 381 37.5
Sc03g0011660 Simmondsia chinensis HOM05D006765 ORTHO05D008554 1.2e-53 214.5 241 53.1
C01p51810 Brassica napus HOM05D006765 ORTHO05D008554 1.6e-53 214.2 367 39.5
BolC1t05128H Brassica oleracea HOM05D006765 ORTHO05D008554 1.6e-53 214.2 354 40.4
EL10Ac4g07518 Beta vulgaris HOM05D006765 ORTHO05D008554 3.5e-53 213.0 382 39.0
BcaC09g48297 Brassica carinata HOM05D006765 ORTHO05D008554 7.7e-53 211.8 370 38.9
Thhalv10020892m.g Eutrema salsugineum HOM05D006765 ORTHO05D008554 7.7e-53 211.8 391 38.1
BraA01t04065Z Brassica rapa HOM05D006765 ORTHO05D008554 1.0e-52 211.5 369 37.1
Hund01854 Selenicereus undatus HOM05D006765 ORTHO05D008554 1.0e-52 211.5 181 58.0
Aa31LG8G470 Aethionema arabicum HOM05D006765 ORTHO05D008554 2.2e-52 210.3 309 41.7
A01p40290 Brassica napus HOM05D006765 ORTHO05D008554 2.2e-52 210.3 369 39.6
arahy.Tifrunner.gnm1.ann1.8KGR77 Arachis hypogaea HOM05D006765 ORTHO05D008554 3.8e-52 209.5 371 39.9
AUR62017157 Chenopodium quinoa HOM05D006765 ORTHO05D008554 1.1e-51 208.0 386 38.9
Zm00001eb433160 Zea mays HOM05D006765 ORTHO05D008554 4.2e-51 206.1 189 54.5
MD03G1037000 Malus domestica HOM05D006765 ORTHO05D008554 5.5e-51 205.7 125 82.4
PSO675G8178 Papaver somniferum HOM05D006765 ORTHO05D008554 2.1e-50 203.8 199 56.3
PSO541G0333 Papaver somniferum HOM05D006765 ORTHO05D008554 1.0e-49 201.4 199 55.8
AUR62035647 Chenopodium quinoa HOM05D006765 ORTHO05D008554 6.8e-49 198.7 209 54.5
Os04g0667900 Oryza sativa ssp. japonica HOM05D006765 ORTHO05D008554 1.5e-48 197.6 273 44.0
Prupe.6G029900 Prunus persica HOM05D006765 ORTHO05D008554 4.9e-47 192.6 168 62.5
DCAR_013261 Daucus carota HOM05D006765 ORTHO05D008554 2.4e-46 190.3 215 48.8
vmacro09619 Vaccinium macrocarpon HOM05D006765 ORTHO05D008554 9.1e-46 188.3 284 44.7
ATR0751G181 Amborella trichopoda HOM05D006765 ORTHO05D008554 2.7e-45 186.8 212 51.4
Thecc.07G007200 Theobroma cacao HOM05D006765 ORTHO05D008554 1.6e-42 177.6 232 48.3
CDE04G0216 Ceratophyllum demersum HOM05D006765 ORTHO05D008554 6.8e-33 145.6 154 48.7
Pp3c19_18350 Physcomitrium patens HOM05D006765 ORTHO05D008554 2.0e-32 144.1 199 42.7
Sed0007098 Sechium edule HOM05D006765 ORTHO05D008554 2.6e-32 143.7 238 42.4
SEGI_27535 Sequoiadendron giganteum HOM05D006765 ORTHO05D008554 9.2e-30 135.2 131 49.6
SMO115G0196 Selaginella moellendorffii HOM05D006765 ORTHO05D008554 5.6e-27 125.9 163 39.3
Psat2g006040 Pisum sativum HOM05D006765 ORTHO05D008554 9.5e-27 125.2 334 33.2
MD03G1037100 Malus domestica HOM05D006765 ORTHO05D008554 6.4e-23 112.5 153 47.7
Mapoly0047s0103 Marchantia polymorpha HOM05D006765 ORTHO05D008554 2.4e-22 110.5 298 27.9
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 9.9e-16 88.6 70 54.3
Hma1.2p1_1094F.1_g256330 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 2.2e-15 87.4 217 32.7
MCO16G170 Micromonas commoda HOM05D006765 ORTHO05D008554 1.6e-10 71.2 221 27.6
Manes.05G203050 Manihot esculenta HOM05D006765 ORTHO05D008554 3.8e-07 60.1 73 50.7
Cc00_g31880 Coffea canephora HOM05D006765 ORTHO05D008554 1.9e-06 57.8 65 46.2


User provided reference genes

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