Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.4e-218 761.9 397 100.0
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 7.6e-180 634.0 397 85.9
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 2.3e-160 569.3 397 76.8
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 2.5e-146 522.7 398 71.4
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 9.1e-141 504.2 398 69.8
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 6.1e-137 491.5 398 67.6
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 2.5e-114 416.4 399 58.4
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 4.4e-111 405.6 397 63.2
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 1.3e-110 404.1 390 58.5
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 3.7e-110 402.5 402 59.0
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.8e-109 400.2 399 58.9
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.0e-108 396.7 401 57.4
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 3.8e-107 392.5 396 56.8
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 1.9e-106 390.2 392 55.6
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 1.2e-105 387.5 402 56.5
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 1.2e-105 387.5 402 56.7
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 4.7e-105 385.6 401 55.9
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.4e-104 384.0 399 55.6
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 3.0e-104 382.9 398 53.8
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 3.0e-104 382.9 398 53.8
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 8.9e-104 381.3 402 56.0
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 1.2e-103 380.9 399 55.6
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 4.4e-103 379.0 399 55.6
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 2.2e-102 376.7 399 54.9
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 1.8e-101 373.6 402 53.7
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.2e-101 372.9 402 55.0
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 3.2e-101 372.9 402 55.0
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 3.5e-100 369.4 392 54.1
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 1.3e-99 367.5 399 52.1
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 2.9e-99 366.3 390 54.4
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 6.6e-99 365.2 389 53.5
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.1e-98 364.4 393 54.2
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 1.5e-98 364.0 389 53.2
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 1.5e-98 364.0 399 54.4
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 2.1e-97 360.1 390 52.8
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 3.6e-97 359.4 399 51.4
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 1.0e-96 357.8 399 53.1
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 2.3e-96 356.7 401 53.1
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 5.8e-95 352.1 398 51.3
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 3.7e-94 349.4 398 50.3
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 6.4e-94 348.6 491 45.8
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 9.2e-93 344.7 401 49.6
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 3.5e-92 342.8 401 49.4
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 1.0e-91 341.3 399 51.4
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 3.0e-91 339.7 367 52.6
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 5.0e-91 339.0 449 49.0
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 6.6e-91 338.6 393 51.7
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 2.8e-89 333.2 391 49.4
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 1.8e-88 330.5 358 53.6
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 2.3e-88 330.1 343 56.9
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 5.2e-88 328.9 328 55.8
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 3.4e-87 326.2 391 49.4
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 3.7e-86 322.8 399 50.1
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 7.1e-85 318.5 379 49.9
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 9.2e-85 318.2 369 49.9
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 9.2e-85 318.2 393 50.4
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 2.7e-84 316.6 394 50.3
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 6.0e-84 315.5 396 47.5
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 1.7e-83 313.9 400 49.0
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 2.3e-83 313.5 433 45.7
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.5e-82 310.1 461 44.7
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 4.7e-81 305.8 274 62.4
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 1.8e-80 303.9 324 56.5
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 5.8e-79 298.9 457 44.6
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 5.8e-79 298.9 457 44.6
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.7e-78 297.4 382 46.9
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 3.2e-77 293.1 387 45.0
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 3.2e-77 293.1 383 45.7
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 4.1e-77 292.7 398 45.5
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 6.0e-76 288.9 378 42.6
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 7.8e-76 288.5 398 46.0
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 1.0e-75 288.1 396 47.2
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 1.7e-75 287.3 325 53.2
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 1.5e-74 284.3 399 45.1
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 2.5e-74 283.5 390 46.9
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 9.6e-74 281.6 368 46.7
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 3.6e-73 279.6 391 44.5
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 8.9e-72 275.0 400 41.5
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 5.8e-71 272.3 395 41.3
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 1.7e-70 270.8 397 44.8
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 2.2e-70 270.4 394 41.9
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 2.2e-70 270.4 354 50.0
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 8.4e-70 268.5 278 54.7
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 1.9e-69 267.3 307 52.4
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 1.9e-69 267.3 396 40.9
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 4.2e-69 266.2 395 44.1
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 1.2e-68 264.6 403 39.7
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 1.2e-68 264.6 394 43.9
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 1.6e-68 264.2 349 47.0
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 2.7e-68 263.5 391 43.5
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 1.3e-67 261.2 338 46.7
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 2.3e-67 260.4 408 40.2
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 1.1e-66 258.1 392 44.1
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 1.9e-66 257.3 391 43.0
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 3.6e-65 253.1 257 57.2
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 1.8e-64 250.8 402 39.3
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 1.8e-64 250.8 394 38.6
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 1.8e-64 250.8 402 38.3
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 2.4e-64 250.4 375 41.1
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 3.1e-64 250.0 394 42.6
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 2.0e-63 247.3 395 39.2
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 2.0e-63 247.3 403 38.0
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.4e-63 246.5 391 42.2
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 4.4e-63 246.1 389 42.2
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 4.4e-63 246.1 396 41.4
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 5.8e-63 245.7 394 37.8
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 5.8e-63 245.7 394 37.8
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 7.6e-63 245.4 403 37.7
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 1.3e-62 244.6 403 37.7
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 1.7e-62 244.2 390 41.8
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 2.2e-62 243.8 394 37.6
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 2.9e-62 243.4 396 42.7
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 1.4e-61 241.1 263 53.6
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 2.7e-60 236.9 397 37.5
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 3.5e-60 236.5 320 43.8
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 1.3e-59 234.6 388 42.8
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.9e-59 233.0 198 65.7
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 4.3e-58 229.6 304 48.7
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 3.6e-57 226.5 390 36.7
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 8.1e-57 225.3 410 36.1
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 4.0e-56 223.0 372 38.4
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 1.5e-55 221.1 431 34.6
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 1.5e-55 221.1 195 65.6
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.6e-55 220.3 388 39.9
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 1.2e-52 211.5 406 34.7
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.6e-52 211.1 231 49.4
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 6.0e-52 209.1 353 42.5
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 3.9e-51 206.5 352 36.6
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 5.1e-51 206.1 441 32.7
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 1.9e-50 204.1 249 49.4
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 2.5e-50 203.8 450 37.1
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 7.4e-50 202.2 171 65.5
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.6e-49 201.1 198 58.6
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 5.3e-48 196.1 390 39.2
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 6.9e-48 195.7 349 36.7
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 1.7e-46 191.0 375 35.7
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.9e-46 190.3 390 37.2
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 2.9e-46 190.3 362 35.9
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 1.4e-45 188.0 410 37.3
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.2e-44 184.9 321 40.5
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 2.1e-44 184.1 252 47.6
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 9.6e-42 175.3 381 33.1
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 3.2e-37 160.2 168 54.8
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 4.6e-36 156.4 204 50.0
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 7.9e-36 155.6 392 34.4
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 1.8e-32 144.4 131 58.0
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.5e-31 141.4 111 70.3
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 6.5e-30 136.0 170 50.0
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 7.9e-28 129.0 203 43.8
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 6.7e-27 125.9 243 38.3
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 1.5e-26 124.8 105 58.1
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 1.5e-26 124.8 159 47.8
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 2.0e-26 124.4 172 47.7
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.3e-26 123.6 129 62.0
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 3.7e-25 120.2 220 39.5
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 2.0e-23 114.4 119 52.1
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.6e-23 114.0 148 48.0
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 1.1e-21 108.6 94 61.7
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 5.1e-19 99.8 116 53.4
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 1.1e-18 98.6 71 73.2
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 5.7e-18 96.3 132 43.2
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.2e-17 94.4 72 59.7
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 8.5e-14 82.4 76 63.2
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 9.4e-13 79.0 134 36.6
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.6e-10 70.9 325 28.0
Sed0009700 Sechium edule HOM05D004223 ORTHO05D372866 1.1e-08 65.5 77 46.8


User provided reference genes

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