Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g36880 Fragaria vesca HOM05D007264 ORTHO05D008639 5.1e-88 327.8 174 100.0
FAN11G3606 Fragaria x ananassa HOM05D007264 ORTHO05D008639 5.1e-88 327.8 174 100.0
FAN21G2492 Fragaria x ananassa HOM05D007264 ORTHO05D008639 1.2e-84 316.6 173 97.1
FAN25G3374 Fragaria x ananassa HOM05D007264 ORTHO05D008639 4.9e-83 311.2 173 96.0
RcHm_v2.0_Chr5g0066101 Rosa chinensis HOM05D007264 ORTHO05D008639 1.4e-77 293.1 173 89.6
Prupe.6G071500 Prunus persica HOM05D007264 ORTHO05D008639 8.8e-56 220.7 167 71.3
MD03G1086900 Malus domestica HOM05D007264 ORTHO05D008639 3.5e-44 182.2 175 64.6
MD11G1096000 Malus domestica HOM05D007264 ORTHO05D008639 2.2e-43 179.5 174 62.1
QL01p030632 Quercus lobata HOM05D007264 ORTHO05D008639 2.0e-36 156.4 169 55.0
Haze_24148 Corylus avellana HOM05D007264 ORTHO05D008639 1.2e-33 147.1 173 53.2
Cfa011538 Carpinus fangiana HOM05D007264 ORTHO05D008639 1.5e-31 140.2 168 51.8
CiPaw.14G066400 Carya illinoinensis HOM05D007264 ORTHO05D008639 1.5e-31 140.2 175 50.3
COL.COLO4_18565 Corchorus olitorius HOM05D007264 ORTHO05D008639 7.5e-31 137.9 173 51.4
Dinv17036 Davidia involucrata HOM05D007264 ORTHO05D008639 8.3e-30 134.4 175 50.9
Dinv42982 Davidia involucrata HOM05D007264 ORTHO05D008639 8.3e-30 134.4 175 50.9
Dinv43117 Davidia involucrata HOM05D007264 ORTHO05D008639 8.3e-30 134.4 175 50.9
TWI79G0692 Tripterygium wilfordii HOM05D007264 ORTHO05D008639 2.7e-28 129.4 170 48.2
TAR560G0010 Trochodendron aralioides HOM05D007264 ORTHO05D008639 1.0e-27 127.5 175 49.1
vmacro03038 Vaccinium macrocarpon HOM05D007264 ORTHO05D008639 3.8e-27 125.6 174 50.0
TAR623G1366 Trochodendron aralioides HOM05D007264 ORTHO05D008639 5.0e-27 125.2 175 48.6
Ciclev10029397m.g Citrus clementina HOM05D007264 ORTHO05D008639 8.6e-27 124.4 174 46.0
Migut.D00885 Erythranthe guttata HOM05D007264 ORTHO05D008639 1.9e-26 123.2 137 54.0
Sabra16G0147800 Salix brachista HOM05D007264 ORTHO05D008639 2.5e-26 122.9 179 44.7
GSVIVG01024917001 Vitis vinifera HOM05D007264 ORTHO05D008639 9.5e-26 120.9 176 46.6
EL10Ac7g16055 Beta vulgaris HOM05D007264 ORTHO05D008639 1.6e-25 120.2 147 53.1
CANSAT54G1805 Cannabis sativa HOM05D007264 ORTHO05D008639 1.6e-25 120.2 169 45.0
Manes.01G170100 Manihot esculenta HOM05D007264 ORTHO05D008639 1.6e-25 120.2 176 48.9
Nn8g40679 Nelumbo nucifera HOM05D007264 ORTHO05D008639 1.6e-25 120.2 171 45.6
Thecc.09G317100 Theobroma cacao HOM05D007264 ORTHO05D008639 1.6e-25 120.2 134 51.5
Peaxi162Scf00038g02028 Petunia axillaris HOM05D007264 ORTHO05D008639 2.8e-25 119.4 154 51.9
MBI14_g08028_MAGBIO Magnolia biondii HOM05D007264 ORTHO05D008639 8.0e-25 117.9 146 53.4
Nitab4.5_0014843g0020 Nicotiana tabacum HOM05D007264 ORTHO05D008639 5.2e-24 115.2 166 50.0
Lsat_1_v5_gn_5_169441 Lactuca sativa HOM05D007264 ORTHO05D008639 8.9e-24 114.4 97 64.9
Solyc05g009300.1 Solanum lycopersicum HOM05D007264 ORTHO05D008639 1.5e-23 113.6 173 46.2
Eucgr.J02035 Eucalyptus grandis HOM05D007264 ORTHO05D008639 2.0e-23 113.2 186 43.5
Potri.001G243500 Populus trichocarpa HOM05D007264 ORTHO05D008639 2.0e-23 113.2 179 43.0
Gohir.D07G104200 Gossypium hirsutum HOM05D007264 ORTHO05D008639 2.6e-23 112.8 170 43.5
Sopen05g005050 Solanum pennellii HOM05D007264 ORTHO05D008639 2.6e-23 112.8 146 50.7
arahy.Tifrunner.gnm1.ann1.4DS88F Arachis hypogaea HOM05D007264 ORTHO05D008639 4.4e-23 112.1 145 49.0
MELO3C025896.2 Cucumis melo HOM05D007264 ORTHO05D008639 4.4e-23 112.1 173 46.8
Gohir.A07G099900 Gossypium hirsutum HOM05D007264 ORTHO05D008639 5.7e-23 111.7 170 43.5
Cc01_g13240 Coffea canephora HOM05D007264 ORTHO05D008639 9.8e-23 110.9 168 44.6
ATR0559G356 Amborella trichopoda HOM05D007264 ORTHO05D008639 1.7e-22 110.2 112 57.1
ECA248G2900 Erigeron canadensis HOM05D007264 ORTHO05D008639 1.7e-22 110.2 97 62.9
MSTRG.11098 Avicennia marina HOM05D007264 ORTHO05D008639 2.2e-22 109.8 131 48.1
Gorai.001G112100 Gossypium raimondii HOM05D007264 ORTHO05D008639 2.8e-22 109.4 170 44.1
AL4G23740 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 4.9e-22 108.6 171 42.1
arahy.Tifrunner.gnm1.ann1.EHGE9H Arachis hypogaea HOM05D007264 ORTHO05D008639 4.9e-22 108.6 146 48.6
PSO339G5862 Papaver somniferum HOM05D007264 ORTHO05D008639 4.9e-22 108.6 173 44.5
PSO513G0105 Papaver somniferum HOM05D007264 ORTHO05D008639 4.9e-22 108.6 131 55.0
Nitab4.5_0006942g0010 Nicotiana tabacum HOM05D007264 ORTHO05D008639 6.3e-22 108.2 194 46.9
AL41U10070 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 1.1e-21 107.5 171 42.1
AUR62020022 Chenopodium quinoa HOM05D007264 ORTHO05D008639 1.1e-21 107.5 109 60.6
Lalb_Chr24g0394031 Lupinus albus HOM05D007264 ORTHO05D008639 1.4e-21 107.1 177 44.1
Sed0006840 Sechium edule HOM05D007264 ORTHO05D008639 1.8e-21 106.7 180 48.9
PGSC0003DMG400014567 Solanum tuberosum HOM05D007264 ORTHO05D008639 3.1e-21 105.9 146 48.6
CSS0034107 Camellia sinensis var. sinensis HOM05D007264 ORTHO05D008639 4.1e-21 105.5 172 45.3
Actinidia33776 Actinidia chinensis HOM05D007264 ORTHO05D008639 5.4e-21 105.1 181 44.2
PGR119G0519 Punica granatum HOM05D007264 ORTHO05D008639 5.4e-21 105.1 171 44.4
ClCG02G019960 Citrullus lanatus HOM05D007264 ORTHO05D008639 1.2e-20 104.0 171 45.0
AT2G29180 Arabidopsis thaliana HOM05D007264 ORTHO05D008639 3.5e-20 102.4 183 42.1
Carub.0004s1020 Capsella rubella HOM05D007264 ORTHO05D008639 3.5e-20 102.4 175 42.9
Lj3g0004900 Lotus japonicus HOM05D007264 ORTHO05D008639 4.5e-20 102.1 154 44.2
CsaV3_6G016660 Cucumis sativus L. HOM05D007264 ORTHO05D008639 5.9e-20 101.7 167 44.3
DCAR_005951 Daucus carota HOM05D007264 ORTHO05D008639 1.7e-19 100.1 176 42.6
Cpa.g.sc81.107 Carica papaya HOM05D007264 ORTHO05D008639 2.3e-19 99.8 186 43.5
Duzib168G0085 Durio zibethinus HOM05D007264 ORTHO05D008639 2.9e-19 99.4 172 38.4
Medtr1g071380 Medicago truncatula HOM05D007264 ORTHO05D008639 2.9e-19 99.4 115 50.4
Medtr2g097680 Medicago truncatula HOM05D007264 ORTHO05D008639 5.0e-19 98.6 115 50.4
Nn2g13417 Nelumbo nucifera HOM05D007264 ORTHO05D008639 8.6e-19 97.8 107 55.1
CARHR122460 Cardamine hirsuta HOM05D007264 ORTHO05D008639 2.5e-18 96.3 177 42.9
Oeu002437.1 Olea europaea HOM05D007264 ORTHO05D008639 4.3e-18 95.5 179 39.7
HanXRQChr01g0010441 Helianthus annuus HOM05D007264 ORTHO05D008639 5.6e-18 95.1 97 56.7
Hund18892 Selenicereus undatus HOM05D007264 ORTHO05D008639 7.3e-18 94.7 108 53.7
Oeu002436.1 Olea europaea HOM05D007264 ORTHO05D008639 2.1e-17 93.2 179 40.2
SGA_v2.0_scaffold111G31536 Striga asiatica HOM05D007264 ORTHO05D008639 3.6e-17 92.4 194 38.7
CDE04G3075 Ceratophyllum demersum HOM05D007264 ORTHO05D008639 2.3e-16 89.7 167 42.5
Atru.chr3.3962 Acer truncatum HOM05D007264 ORTHO05D008639 2.0e-15 86.7 184 38.0
BcaB01g03133 Brassica carinata HOM05D007264 ORTHO05D008639 2.0e-15 86.7 121 48.8
Sp4g11990 Schrenkiella parvula HOM05D007264 ORTHO05D008639 2.0e-15 86.7 179 37.4
A02p43580 Brassica napus HOM05D007264 ORTHO05D008639 2.6e-15 86.3 79 60.8
BraA02t09285Z Brassica rapa HOM05D007264 ORTHO05D008639 2.6e-15 86.3 79 60.8
Aa31LG5G7130 Aethionema arabicum HOM05D007264 ORTHO05D008639 9.8e-15 84.3 75 64.0
Aqoxy1G00887 Aquilegia oxysepala HOM05D007264 ORTHO05D008639 9.8e-15 84.3 177 41.2
BolC2t12437H Brassica oleracea HOM05D007264 ORTHO05D008639 9.8e-15 84.3 158 39.9
BcaC03g18293 Brassica carinata HOM05D007264 ORTHO05D008639 1.7e-14 83.6 158 39.2
C02p63690 Brassica napus HOM05D007264 ORTHO05D008639 1.7e-14 83.6 158 39.2
Sc25g0001650 Simmondsia chinensis HOM05D007264 ORTHO05D008639 2.2e-14 83.2 101 50.5
THA.LOC104800684 Tarenaya hassleriana HOM05D007264 ORTHO05D008639 3.7e-14 82.4 200 34.5
TAR369G0859 Trochodendron aralioides HOM05D007264 ORTHO05D008639 3.7e-14 82.4 115 47.8
Glyma.15G035800 Glycine max HOM05D007264 ORTHO05D008639 4.9e-14 82.0 131 42.0
Phvul.L007743 Phaseolus vulgaris HOM05D007264 ORTHO05D008639 8.3e-14 81.3 181 39.8
Glyma.13G338500 Glycine max HOM05D007264 ORTHO05D008639 1.1e-13 80.9 176 41.5
AUR62001749 Chenopodium quinoa HOM05D007264 ORTHO05D008639 1.4e-13 80.5 182 40.1
Ah.15g098550 Amaranthus hybridus HOM05D007264 ORTHO05D008639 1.8e-13 80.1 174 39.7
VMungo1080G0594 Vigna mungo HOM05D007264 ORTHO05D008639 1.2e-12 77.4 179 38.5
TPR.G6833 Trifolium pratense HOM05D007264 ORTHO05D008639 4.6e-12 75.5 182 36.8
Psat5g287960 Pisum sativum HOM05D007264 ORTHO05D008639 2.1e-09 66.6 145 36.6
Rhsim13G0078000 Rhododendron simsii HOM05D007264 ORTHO05D008639 1.4e-08 63.9 126 39.7
Os03g0271500 Oryza sativa ssp. japonica HOM05D016300 ORTHO05D008639 6.8e-08 61.6 57 61.4
unitig_899.g15261 Utricularia gibba HOM05D007264 ORTHO05D008639 1.5e-07 60.5 173 33.5
Pp3c15_10400 Physcomitrium patens HOM05D007264 ORTHO05D008639 3.7e-06 55.8 75 49.3


User provided reference genes

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