Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 3.4e-65 251.5 127 100.0
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.4e-65 251.5 127 100.0
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.2e-64 248.8 127 98.4
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.2e-64 248.8 127 98.4
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 1.3e-61 239.6 127 93.7
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.9e-61 238.0 126 95.2
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 3.0e-53 211.8 128 82.0
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 1.9e-52 209.1 128 81.2
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 1.8e-50 202.6 128 80.5
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 1.8e-50 202.6 118 81.4
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 9.0e-50 200.3 126 77.8
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 3.4e-49 198.4 127 78.0
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 5.8e-49 197.6 127 77.2
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 5.8e-49 197.6 124 75.8
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 9.9e-49 196.8 127 76.4
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 2.9e-48 195.3 128 76.6
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 8.4e-48 193.7 127 74.8
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 3.2e-47 191.8 128 75.0
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 3.2e-47 191.8 130 74.6
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 3.2e-47 191.8 127 74.0
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 4.2e-47 191.4 124 74.2
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 4.2e-47 191.4 117 80.3
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 4.2e-47 191.4 127 74.0
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 5.4e-47 191.0 127 74.8
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 5.4e-47 191.0 127 74.0
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 5.4e-47 191.0 128 77.3
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 5.4e-47 191.0 128 76.6
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 7.1e-47 190.7 128 77.3
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 1.2e-46 189.9 128 73.4
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 2.1e-46 189.1 121 75.2
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 2.7e-46 188.7 122 76.2
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 2.7e-46 188.7 118 76.3
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 6.0e-46 187.6 122 73.8
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 1.0e-45 186.8 127 72.4
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 1.0e-45 186.8 127 74.8
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.0e-45 186.8 122 75.4
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 1.7e-45 186.0 113 77.0
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 2.3e-45 185.7 127 70.1
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 2.3e-45 185.7 118 75.4
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 5.1e-45 184.5 127 72.4
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 6.6e-45 184.1 128 72.7
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 1.1e-44 183.3 127 72.4
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 1.1e-44 183.3 127 70.9
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.5e-44 183.0 121 72.7
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 1.9e-44 182.6 124 71.8
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 1.9e-44 182.6 124 71.8
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 1.9e-44 182.6 124 71.8
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 1.9e-44 182.6 117 73.5
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 2.5e-44 182.2 107 80.4
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 2.5e-44 182.2 118 72.0
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 3.3e-44 181.8 117 70.9
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 3.3e-44 181.8 123 73.2
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 4.3e-44 181.4 121 73.6
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 4.3e-44 181.4 128 72.7
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 5.6e-44 181.0 149 63.8
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 5.6e-44 181.0 128 69.5
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 7.3e-44 180.6 127 71.7
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 7.3e-44 180.6 133 69.2
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 7.3e-44 180.6 117 71.8
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 9.6e-44 180.3 128 71.9
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 9.6e-44 180.3 127 70.1
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 9.6e-44 180.3 127 70.1
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 9.6e-44 180.3 113 75.2
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 9.6e-44 180.3 128 71.9
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 9.6e-44 180.3 128 71.9
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 9.6e-44 180.3 117 71.8
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 1.3e-43 179.9 120 71.7
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 1.3e-43 179.9 110 77.3
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.6e-43 179.5 128 71.1
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 2.8e-43 178.7 118 72.9
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 2.8e-43 178.7 118 73.7
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 3.6e-43 178.3 117 70.9
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.8e-43 177.9 118 73.7
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 6.2e-43 177.6 118 72.0
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 6.2e-43 177.6 120 72.5
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 6.2e-43 177.6 118 72.9
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 8.1e-43 177.2 118 72.9
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 8.1e-43 177.2 118 72.9
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 8.1e-43 177.2 118 72.9
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 8.1e-43 177.2 118 72.0
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 8.1e-43 177.2 141 64.5
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 8.1e-43 177.2 118 73.7
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 8.1e-43 177.2 117 70.9
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.1e-42 176.8 127 69.3
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 1.1e-42 176.8 143 64.3
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 1.4e-42 176.4 118 72.9
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 1.4e-42 176.4 118 72.9
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 1.4e-42 176.4 118 72.9
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 1.4e-42 176.4 125 69.6
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 1.8e-42 176.0 118 72.9
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 3.1e-42 175.3 113 73.5
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 3.1e-42 175.3 111 73.0
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 3.1e-42 175.3 114 75.4
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 5.3e-42 174.5 122 69.7
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 5.3e-42 174.5 122 69.7
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 9.0e-42 173.7 120 69.2
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 9.0e-42 173.7 114 70.2
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 9.0e-42 173.7 128 69.5
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 1.2e-41 173.3 125 68.0
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.2e-41 173.3 115 70.4
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.2e-41 173.3 115 72.2
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 4.5e-41 171.4 127 67.7
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 5.8e-41 171.0 111 69.4
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 3.8e-40 168.3 125 68.8
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 3.2e-39 165.2 147 59.9
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 6.0e-38 161.0 121 64.5
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 4.8e-27 124.8 88 69.3
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 5.8e-25 117.9 106 53.8
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 1.4e-23 113.2 81 69.1
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 4.2e-23 111.7 106 49.1
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 1.2e-22 110.2 68 77.9
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 1.3e-21 106.7 106 48.1
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 4.3e-20 101.7 62 75.8
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 9.7e-20 100.5 67 73.1
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 4.8e-19 98.2 59 79.7
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 6.3e-19 97.8 58 72.4
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 8.2e-19 97.4 59 79.7
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 1.1e-18 97.1 69 62.3
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 1.4e-18 96.7 68 64.7
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 1.4e-18 96.7 73 61.6
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 1.8e-18 96.3 81 61.7
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.8e-18 96.3 68 63.2
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 1.8e-18 96.3 77 61.0
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 2.4e-18 95.9 68 67.6
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 3.1e-18 95.5 67 64.2
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.1e-18 95.5 73 63.0
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 2.0e-17 92.8 63 73.0
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 2.9e-16 89.0 124 42.7
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 5.0e-16 88.2 71 59.2
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 5.0e-16 88.2 60 73.3
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 1.9e-15 86.3 108 39.8
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.6e-14 83.2 57 71.9
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 1.6e-14 83.2 58 67.2
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 3.9e-13 78.6 57 64.9
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.3e-11 73.6 57 63.2
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 2.8e-11 72.4 101 37.6
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 3.1e-10 68.9 51 64.7
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 3.1e-10 68.9 51 64.7
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 4.1e-10 68.6 47 68.1
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 5.3e-10 68.2 51 64.7
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 6.5e-08 61.2 38 68.4


User provided reference genes

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