Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.8e-244 848.2 431 100.0
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 2.0e-226 788.9 403 99.0
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 3.5e-215 751.5 403 93.5
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 5.0e-193 677.9 404 84.4
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.3e-185 653.3 356 94.1
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 1.6e-183 646.4 374 86.1
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 2.7e-183 645.6 433 75.8
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 8.8e-182 640.6 360 91.9
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 5.7e-181 637.9 398 77.6
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 3.7e-180 635.2 403 77.7
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 8.2e-180 634.0 401 78.1
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 1.6e-178 629.8 395 77.0
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 5.9e-178 627.9 395 79.0
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 7.7e-178 627.5 381 78.5
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.0e-177 627.1 381 78.5
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 3.8e-177 625.2 403 75.2
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 8.5e-177 624.0 402 73.9
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 9.4e-176 620.5 400 77.2
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 1.2e-175 620.2 406 74.6
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 1.6e-175 619.8 413 75.3
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 6.1e-175 617.8 403 76.4
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 8.0e-175 617.5 405 75.6
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 1.4e-174 616.7 392 76.0
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 3.0e-174 615.5 403 73.7
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 6.7e-174 614.4 400 76.2
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 1.2e-173 613.6 403 73.9
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 1.2e-173 613.6 404 73.5
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 1.2e-173 613.6 399 76.9
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 1.5e-173 613.2 397 75.3
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 2.6e-173 612.5 403 72.7
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 9.1e-171 604.0 398 75.6
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.5e-168 596.7 402 73.4
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 5.5e-168 594.7 380 76.1
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 7.2e-168 594.3 399 74.4
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 4.7e-167 591.7 397 73.3
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 8.0e-167 590.9 401 72.8
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 6.8e-166 587.8 393 74.6
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 6.8e-166 587.8 391 74.2
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 2.6e-165 585.9 376 74.5
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 5.7e-165 584.7 368 77.7
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 9.8e-165 583.9 398 71.6
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 8.3e-164 580.9 395 71.1
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 5.4e-163 578.2 401 71.1
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 5.9e-162 574.7 398 72.1
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 1.7e-161 573.2 349 79.7
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 2.8e-159 565.8 360 76.7
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 4.7e-159 565.1 398 70.6
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 1.0e-158 563.9 349 77.1
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 1.4e-158 563.5 399 70.4
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 3.0e-158 562.4 370 73.5
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 3.0e-158 562.4 370 73.5
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 2.0e-157 559.7 374 72.7
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 2.2e-156 556.2 407 67.6
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 2.2e-156 556.2 406 67.7
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 3.7e-156 555.4 353 77.1
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 3.1e-155 552.4 408 66.7
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 8.6e-153 544.3 388 70.1
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 5.6e-152 541.6 400 66.2
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 2.8e-151 539.3 380 70.3
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 8.0e-151 537.7 613 48.3
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 1.3e-148 530.4 348 72.1
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 4.9e-148 528.5 345 74.8
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 6.6e-145 518.1 409 65.8
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 1.5e-144 516.9 338 74.0
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 3.1e-142 509.2 333 71.8
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.7e-140 503.4 333 70.9
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 7.0e-139 498.0 348 69.5
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.2e-138 497.3 353 70.3
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 1.5e-136 490.3 353 68.3
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 1.2e-135 487.3 320 72.8
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.4e-134 483.8 307 76.9
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 4.0e-134 482.3 384 65.4
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 8.9e-134 481.1 329 70.8
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 1.5e-133 480.3 404 62.1
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.0e-133 479.9 388 64.2
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 1.2e-130 470.7 355 66.5
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 5.1e-129 465.3 295 76.6
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 5.6e-128 461.8 296 75.0
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 1.6e-127 460.3 317 71.3
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 1.4e-126 457.2 367 59.4
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 4.4e-125 452.2 292 76.4
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 3.6e-119 432.6 371 58.2
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 5.3e-118 428.7 371 54.7
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 1.2e-117 427.6 372 56.5
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 4.2e-115 419.1 364 61.8
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.3e-113 414.1 397 58.2
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 5.3e-110 402.1 288 69.4
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 1.5e-101 374.0 246 72.0
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 7.4e-96 355.1 301 62.1
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 2.1e-90 337.0 403 44.9
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 1.6e-87 327.4 204 74.5
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 6.9e-86 322.0 230 69.1
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 4.2e-75 286.2 394 41.1
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 2.7e-74 283.5 171 84.2
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 2.0e-72 277.3 228 59.6
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 1.2e-66 258.1 418 38.0
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.3e-63 248.1 199 61.8
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 3.5e-53 213.4 153 69.3
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.8e-49 201.1 174 60.3
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 2.9e-44 183.7 134 62.7
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 3.3e-43 180.3 367 31.9
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 8.3e-39 165.6 101 78.2
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 7.8e-37 159.1 103 76.7
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 7.8e-37 159.1 103 76.7
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 1.7e-36 157.9 108 72.2
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 1.2e-34 151.8 75 96.0
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 8.6e-28 129.0 76 82.9
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 1.5e-24 118.2 75 77.3
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 1.7e-20 104.8 62 74.2
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 3.9e-12 77.0 48 66.7
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 2.5e-11 74.3 46 78.3
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 3.6e-10 70.5 47 78.7
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 1.2e-08 65.5 118 30.5


User provided reference genes

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