Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3374 Fragaria x ananassa HOM05D006957 ORTHO05D008647 5.8e-158 560.8 282 100.0
FAN25G2833 Fragaria x ananassa HOM05D006957 ORTHO05D008647 1.7e-154 549.3 282 97.5
FAN21G2957 Fragaria x ananassa HOM05D006957 ORTHO05D008647 7.3e-153 543.9 282 96.8
FvH4_3g43300 Fragaria vesca HOM05D006957 ORTHO05D008647 3.5e-147 525.0 282 94.7
FAN16G3059 Fragaria x ananassa HOM05D006957 ORTHO05D008647 9.9e-142 506.9 290 90.0
RcHm_v2.0_Chr5g0077361 Rosa chinensis HOM05D006957 ORTHO05D008647 8.7e-138 493.8 282 89.7
Prupe.6G022000 Prunus persica HOM05D006957 ORTHO05D008647 2.4e-119 432.6 283 78.8
MD11G1027900 Malus domestica HOM05D006957 ORTHO05D008647 1.2e-115 420.2 285 75.8
QL05p072698 Quercus lobata HOM05D006957 ORTHO05D008647 6.5e-109 397.9 295 70.8
Haze_06820 Corylus avellana HOM05D006957 ORTHO05D008647 6.1e-107 391.3 306 68.6
Cfa000203 Carpinus fangiana HOM05D006957 ORTHO05D008647 6.7e-106 387.9 293 69.3
Lj1A1232T100 Lonicera japonica HOM05D006957 ORTHO05D008647 1.3e-104 383.6 294 68.0
CANSAT56G0113 Cannabis sativa HOM05D006957 ORTHO05D008647 1.4e-103 380.2 297 69.0
Dinv13912 Davidia involucrata HOM05D006957 ORTHO05D008647 1.8e-103 379.8 294 68.0
Ciclev10016210m.g Citrus clementina HOM05D006957 ORTHO05D008647 2.4e-103 379.4 294 68.7
Atru.chr10.2253 Acer truncatum HOM05D006957 ORTHO05D008647 5.3e-103 378.3 296 68.6
GSVIVG01012704001 Vitis vinifera HOM05D006957 ORTHO05D008647 1.0e-98 364.0 264 72.3
Lj4g0000977 Lotus japonicus HOM05D006957 ORTHO05D008647 4.0e-98 362.1 291 68.0
Manes.17G025800 Manihot esculenta HOM05D006957 ORTHO05D008647 4.0e-98 362.1 279 67.4
arahy.Tifrunner.gnm1.ann1.VHEB9D Arachis hypogaea HOM05D006957 ORTHO05D008647 8.8e-98 360.9 289 67.1
arahy.Tifrunner.gnm1.ann1.SK97UM Arachis hypogaea HOM05D006957 ORTHO05D008647 2.0e-97 359.8 289 66.8
Glyma.07G262000 Glycine max HOM05D006957 ORTHO05D008647 2.6e-97 359.4 293 66.6
VMungo1215G0309 Vigna mungo HOM05D006957 ORTHO05D008647 7.4e-97 357.8 295 66.4
TWI38G1647 Tripterygium wilfordii HOM05D006957 ORTHO05D008647 3.7e-96 355.5 293 65.5
Glyma.17G012100 Glycine max HOM05D006957 ORTHO05D008647 6.3e-96 354.8 298 65.1
Potri.011G006700 Populus trichocarpa HOM05D006957 ORTHO05D008647 8.2e-96 354.4 266 68.8
MBI18_g04903_MAGBIO Magnolia biondii HOM05D006957 ORTHO05D008647 1.1e-95 354.0 299 63.5
TPR.G29296 Trifolium pratense HOM05D006957 ORTHO05D008647 1.8e-95 353.2 295 63.7
Sed0022215 Sechium edule HOM05D006957 ORTHO05D008647 5.3e-95 351.7 291 65.3
Sopen02g025470 Solanum pennellii HOM05D006957 ORTHO05D008647 9.1e-95 350.9 292 65.4
ClCG01G021850 Citrullus lanatus HOM05D006957 ORTHO05D008647 1.2e-94 350.5 295 65.1
Medtr4g132350 Medicago truncatula HOM05D006957 ORTHO05D008647 1.2e-94 350.5 286 65.7
Solyc02g080780.3 Solanum lycopersicum HOM05D006957 ORTHO05D008647 1.2e-94 350.5 292 65.1
Migut.M01335 Erythranthe guttata HOM05D006957 ORTHO05D008647 2.6e-94 349.4 281 65.1
CSS0002589 Camellia sinensis var. sinensis HOM05D006957 ORTHO05D008647 4.5e-94 348.6 265 69.1
CAN.G1014.10 Capsicum annuum HOM05D006957 ORTHO05D008647 5.9e-94 348.2 291 64.9
CsaV3_6G048910 Cucumis sativus L. HOM05D006957 ORTHO05D008647 5.9e-94 348.2 296 65.5
COL.COLO4_31796 Corchorus olitorius HOM05D006957 ORTHO05D008647 1.7e-93 346.7 215 80.5
MELO3C007402.2 Cucumis melo HOM05D006957 ORTHO05D008647 1.7e-93 346.7 297 64.6
HanXRQChr16g0515501 Helianthus annuus HOM05D006957 ORTHO05D008647 3.8e-93 345.5 295 64.1
ECA234G3681 Erigeron canadensis HOM05D006957 ORTHO05D008647 8.5e-93 344.4 281 65.5
Lalb_Chr07g0177131 Lupinus albus HOM05D006957 ORTHO05D008647 1.1e-92 344.0 307 63.2
Phvul.003G080300 Phaseolus vulgaris HOM05D006957 ORTHO05D008647 1.9e-92 343.2 295 64.7
PGR042G2408 Punica granatum HOM05D006957 ORTHO05D008647 3.2e-92 342.4 273 66.7
vmacro15796 Vaccinium macrocarpon HOM05D006957 ORTHO05D008647 3.2e-92 342.4 293 64.2
Thecc.06G223400 Theobroma cacao HOM05D006957 ORTHO05D008647 5.5e-92 341.7 215 79.5
Gohir.D06G155200 Gossypium hirsutum HOM05D006957 ORTHO05D008647 6.1e-91 338.2 215 78.1
Nitab4.5_0007963g0030 Nicotiana tabacum HOM05D006957 ORTHO05D008647 6.1e-91 338.2 294 62.9
EL10Ac8g20084 Beta vulgaris HOM05D006957 ORTHO05D008647 1.0e-90 337.4 300 63.0
Cc09_g01500 Coffea canephora HOM05D006957 ORTHO05D008647 1.4e-90 337.0 277 64.6
AUR62021927 Chenopodium quinoa HOM05D006957 ORTHO05D008647 1.8e-90 336.7 300 62.3
MSTRG.7198 Avicennia marina HOM05D006957 ORTHO05D008647 2.3e-90 336.3 294 61.6
Lsat_1_v5_gn_4_59280 Lactuca sativa HOM05D006957 ORTHO05D008647 3.0e-90 335.9 296 62.5
Gohir.A06G149100 Gossypium hirsutum HOM05D006957 ORTHO05D008647 4.0e-90 335.5 288 64.6
Psat4g006040 Pisum sativum HOM05D006957 ORTHO05D008647 4.0e-90 335.5 292 63.4
TAR629G0592 Trochodendron aralioides HOM05D006957 ORTHO05D008647 5.2e-90 335.1 287 63.4
DCAR_028192 Daucus carota HOM05D006957 ORTHO05D008647 6.8e-90 334.7 285 63.2
AUR62012727 Chenopodium quinoa HOM05D006957 ORTHO05D008647 1.5e-89 333.6 290 62.8
Nitab4.5_0002695g0060 Nicotiana tabacum HOM05D006957 ORTHO05D008647 2.0e-89 333.2 276 63.4
PGSC0003DMG400016446 Solanum tuberosum HOM05D006957 ORTHO05D008647 9.8e-89 330.9 286 63.3
Eucgr.L02772 Eucalyptus grandis HOM05D006957 ORTHO05D008647 8.3e-88 327.8 271 66.1
Eucgr.E03906 Eucalyptus grandis HOM05D006957 ORTHO05D008647 3.1e-87 325.9 271 66.4
Gorai.010G181400 Gossypium raimondii HOM05D006957 ORTHO05D008647 7.7e-86 321.2 206 77.7
Actinidia11860 Actinidia chinensis HOM05D006957 ORTHO05D008647 1.0e-85 320.9 293 61.8
Aqoxy4G01856 Aquilegia oxysepala HOM05D006957 ORTHO05D008647 1.0e-85 320.9 217 73.7
Hund21421 Selenicereus undatus HOM05D006957 ORTHO05D008647 1.3e-85 320.5 220 73.2
Duzib160G0853 Durio zibethinus HOM05D006957 ORTHO05D008647 2.2e-85 319.7 215 76.3
Peaxi162Scf00178g01715 Petunia axillaris HOM05D006957 ORTHO05D008647 2.9e-85 319.3 272 63.6
THA.LOC104818712 Tarenaya hassleriana HOM05D006957 ORTHO05D008647 5.0e-85 318.5 242 70.2
Sabra04G0005100 Salix brachista HOM05D006957 ORTHO05D008647 6.5e-85 318.2 285 61.1
SGA_v2.0_scaffold4G01906 Striga asiatica HOM05D006957 ORTHO05D008647 1.1e-84 317.4 245 66.5
PSO832G3220 Papaver somniferum HOM05D006957 ORTHO05D008647 2.5e-84 316.2 225 71.1
SalBow8G2851 Salvia bowleyana HOM05D006957 ORTHO05D008647 7.2e-84 314.7 221 71.9
unitig_748.g7953 Utricularia gibba HOM05D006957 ORTHO05D008647 9.4e-84 314.3 251 63.7
Rhsim02G0105900 Rhododendron simsii HOM05D006957 ORTHO05D008647 2.7e-83 312.8 288 60.1
AL2G13680 Arabidopsis lyrata HOM05D006957 ORTHO05D008647 3.6e-83 312.4 239 69.5
QL02p099916 Quercus lobata HOM05D006957 ORTHO05D008647 4.7e-83 312.0 198 77.8
Os03g0744700 Oryza sativa ssp. japonica HOM05D006957 ORTHO05D008647 2.3e-82 309.7 236 66.1
BcaC06g31885 Brassica carinata HOM05D006957 ORTHO05D008647 8.8e-82 307.8 249 65.5
Ca_21073_v3 Cicer arietinum L. HOM05D006957 ORTHO05D008647 8.8e-82 307.8 205 75.1
Duzib192G0359 Durio zibethinus HOM05D006957 ORTHO05D008647 1.5e-81 307.0 208 74.5
AT1G62250 Arabidopsis thaliana HOM05D006957 ORTHO05D008647 2.0e-81 306.6 239 67.8
Ah.09g234750 Amaranthus hybridus HOM05D006957 ORTHO05D008647 3.4e-81 305.8 210 72.4
Sp2g02390 Schrenkiella parvula HOM05D006957 ORTHO05D008647 5.7e-81 305.1 250 66.0
BcaC02g10501 Brassica carinata HOM05D006957 ORTHO05D008647 1.3e-80 303.9 240 67.9
C04p28180 Brassica napus HOM05D006957 ORTHO05D008647 1.3e-80 303.9 240 67.9
BolC4t24361H Brassica oleracea HOM05D006957 ORTHO05D008647 1.3e-80 303.9 240 67.9
Thhalv10023639m.g Eutrema salsugineum HOM05D006957 ORTHO05D008647 2.2e-80 303.1 208 73.6
BolC4t24891H Brassica oleracea HOM05D006957 ORTHO05D008647 2.8e-80 302.8 214 73.4
Carub.0002s0276 Capsella rubella HOM05D006957 ORTHO05D008647 2.8e-80 302.8 241 67.2
CiPaw.09G093600 Carya illinoinensis HOM05D006957 ORTHO05D008647 2.8e-80 302.8 247 65.6
ATR0794G153 Amborella trichopoda HOM05D006957 ORTHO05D008647 5.0e-77 292.0 195 73.3
Nn1g07184 Nelumbo nucifera HOM05D006957 ORTHO05D008647 1.9e-76 290.0 291 57.4
Zm00001eb056950 Zea mays HOM05D006957 ORTHO05D008647 8.0e-75 284.6 225 65.3
CDE05G2181 Ceratophyllum demersum HOM05D006957 ORTHO05D008647 4.4e-73 278.9 269 55.4
BraA01t02718Z Brassica rapa HOM05D006957 ORTHO05D008647 8.3e-72 274.6 239 63.6
A03p67500 Brassica napus HOM05D006957 ORTHO05D008647 1.1e-71 274.2 287 57.1
BcaC02g10063 Brassica carinata HOM05D006957 ORTHO05D008647 1.7e-69 266.9 182 74.2
Sc05g0009300 Simmondsia chinensis HOM05D006957 ORTHO05D008647 7.3e-68 261.5 256 55.9
Mapoly0071s0090 Marchantia polymorpha HOM05D006957 ORTHO05D008647 2.0e-62 243.4 200 60.0
Pp3c10_11430 Physcomitrium patens HOM05D006957 ORTHO05D008647 4.7e-59 232.3 200 56.5
CiPaw.10G072800 Carya illinoinensis HOM05D006957 ORTHO05D008647 6.4e-48 195.3 136 74.3
C04p33270 Brassica napus HOM05D006957 ORTHO05D008647 4.1e-47 192.6 155 64.5
Oeu051204.1 Olea europaea HOM05D006957 ORTHO05D008647 3.5e-46 189.5 102 85.3
SMO347G0662 Selaginella moellendorffii HOM05D006957 ORTHO05D008647 4.6e-46 189.1 193 51.3
arahy.Tifrunner.gnm1.ann1.EAEB6D Arachis hypogaea HOM05D006957 ORTHO05D008647 3.1e-34 149.8 128 61.7
TAR627G0415 Trochodendron aralioides HOM05D006957 ORTHO05D008647 3.3e-28 129.8 81 77.8
CiPaw.10G072900 Carya illinoinensis HOM05D006957 ORTHO05D008647 4.5e-25 119.4 133 51.9
SEGI_02842 Sequoiadendron giganteum HOM05D006957 ORTHO05D008647 3.2e-23 113.2 84 64.3
Dinv20064 Davidia involucrata HOM05D006957 ORTHO05D008647 7.1e-23 112.1 71 77.5
Cre02.g141850 Chlamydomonas reinhardtii HOM05D006957 ORTHO05D008647 3.5e-14 83.2 97 41.2
AagrBONN_evm.TU.Sc2ySwM_228.4491 Anthoceros agrestis HOM05D006957 ORTHO05D008647 3.9e-13 79.7 111 41.4
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 3.4e-09 66.6 97 42.3
PRCOL_00005158 Prasinoderma coloniale HOM05D006957 ORTHO05D008647 4.5e-09 66.2 206 28.6
Cpa.g.sc1199.4 Carica papaya HOM05D006957 ORTHO05D008647 1.0e-08 65.1 35 91.4
Nn1g08227 Nelumbo nucifera HOM05D006957 ORTHO05D008647 3.8e-08 63.2 116 40.5


User provided reference genes

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