Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 3.8e-38 161.4 105 100.0
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.8e-38 161.4 105 100.0
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.2e-36 156.4 103 98.1
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.2e-36 156.4 105 83.8
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.2e-36 156.4 105 83.8
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.6e-36 156.0 105 97.1
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 9.1e-24 113.6 108 76.9
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 3.2e-21 105.1 109 64.2
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 5.5e-21 104.4 109 69.7
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 7.2e-21 104.0 107 57.9
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 6.1e-20 100.9 111 65.8
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.4e-19 99.8 108 60.2
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 3.0e-19 98.6 106 62.3
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.5e-18 96.3 109 74.3
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 3.4e-18 95.1 109 71.6
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 5.7e-18 94.4 110 54.5
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 7.5e-18 94.0 110 56.4
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 2.2e-17 92.4 107 54.2
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 2.8e-17 92.0 110 55.5
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 6.3e-17 90.9 109 56.0
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 55.0
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.4e-16 89.7 105 68.6
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.8e-16 89.4 106 53.8
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 2.4e-16 89.0 113 65.5
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 2.4e-16 89.0 112 53.6
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 2.4e-16 89.0 111 65.8
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 7.0e-16 87.4 110 61.8
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 7.0e-16 87.4 107 53.3
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 9.1e-16 87.0 108 50.0
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.0e-15 85.9 112 58.0
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.7e-15 85.5 111 55.0
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 3.5e-15 85.1 112 56.2
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 3.5e-15 85.1 113 52.2
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 3.5e-15 85.1 111 52.3
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 4.5e-15 84.7 111 67.6
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 4.5e-15 84.7 112 67.0
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 5.9e-15 84.3 111 54.1
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 5.9e-15 84.3 109 48.6
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 7.7e-15 84.0 113 50.4
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 7.7e-15 84.0 109 47.7
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.0e-14 83.6 110 55.5
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 1.3e-14 83.2 108 46.3
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.3e-14 83.2 106 50.0
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.3e-14 83.2 110 50.9
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.7e-14 82.8 109 50.5
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.7e-14 82.8 111 52.3
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.7e-14 82.8 111 52.3
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.2e-14 82.4 111 53.2
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 2.9e-14 82.0 110 55.5
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 3.8e-14 81.6 108 47.2
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 5.0e-14 81.3 112 52.7
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 5.0e-14 81.3 111 51.4
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 5.0e-14 81.3 111 51.4
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 5.0e-14 81.3 111 51.4
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 5.0e-14 81.3 109 62.4
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 6.5e-14 80.9 109 48.6
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 6.5e-14 80.9 111 52.3
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 6.5e-14 80.9 109 51.4
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 8.5e-14 80.5 109 49.5
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 1.1e-13 80.1 111 50.5
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 1.5e-13 79.7 108 46.3
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.5e-13 79.7 108 46.3
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.9e-13 79.3 112 59.8
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.9e-13 79.3 106 50.0
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 2.5e-13 79.0 107 47.7
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 2.5e-13 79.0 108 46.3
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 2.5e-13 79.0 110 48.2
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 2.5e-13 79.0 110 52.7
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 3.2e-13 78.6 110 50.0
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 4.2e-13 78.2 108 63.9
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 4.2e-13 78.2 107 50.5
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 4.2e-13 78.2 107 49.5
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 4.2e-13 78.2 111 45.9
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 4.2e-13 78.2 109 48.6
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 5.5e-13 77.8 111 49.5
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 7.2e-13 77.4 107 51.4
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 7.2e-13 77.4 106 50.9
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 7.2e-13 77.4 108 51.9
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 9.5e-13 77.0 108 46.3
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.2e-12 76.6 107 46.7
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.1e-12 75.9 115 46.1
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 2.7e-12 75.5 106 63.2
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 2.7e-12 75.5 106 48.1
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 3.6e-12 75.1 106 52.8
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 3.6e-12 75.1 106 50.0
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 3.6e-12 75.1 106 50.0
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 3.6e-12 75.1 106 52.8
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 3.6e-12 75.1 106 50.0
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 4.7e-12 74.7 109 57.8
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 8.0e-12 73.9 109 48.6
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.4e-11 73.2 108 47.2
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.8e-11 72.8 106 48.1
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.8e-11 72.8 115 55.7
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.3e-11 72.4 106 49.1
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.3e-11 72.4 108 46.3
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 2.3e-11 72.4 108 47.2
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 3.0e-11 72.0 106 48.1
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 3.0e-11 72.0 115 46.1
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 3.0e-11 72.0 109 50.5
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 4.0e-11 71.6 111 43.2
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 4.0e-11 71.6 108 53.7
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 4.0e-11 71.6 108 46.3
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 6.8e-11 70.9 115 45.2
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 8.8e-11 70.5 109 45.9
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.8e-11 70.5 98 45.9
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.5e-10 69.7 113 54.9
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.5e-10 69.7 113 54.9
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.5e-10 69.7 106 49.1
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 2.0e-10 69.3 106 48.1
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 2.0e-10 69.3 112 45.5
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 2.6e-10 68.9 113 46.0
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 3.4e-10 68.6 115 42.6
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 3.4e-10 68.6 110 45.5
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 9.8e-10 67.0 107 39.3
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 9.8e-10 67.0 103 40.8
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 1.3e-09 66.6 106 46.2
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.3e-09 66.6 106 44.3
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.3e-09 66.6 38 78.9
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 1.7e-09 66.2 115 51.3
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 2.2e-09 65.9 110 42.7
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 2.2e-09 65.9 109 42.2
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 2.8e-09 65.5 106 59.4
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 4.9e-09 64.7 106 60.4
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 4.9e-09 64.7 95 46.3
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 6.3e-09 64.3 40 75.0
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 6.3e-09 64.3 112 48.2
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 8.3e-09 63.9 106 58.5
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 8.3e-09 63.9 110 53.6
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 1.1e-08 63.5 40 75.0
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.1e-08 63.5 94 36.2
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.1e-08 63.5 110 40.9
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.8e-08 62.8 108 47.2
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.8e-08 62.8 108 47.2
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.8e-08 62.8 106 40.6
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 2.4e-08 62.4 40 75.0
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 4.1e-08 61.6 108 45.4
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 5.4e-08 61.2 108 43.5
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 5.4e-08 61.2 110 40.0
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 5.4e-08 61.2 105 57.1
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 9.2e-08 60.5 113 39.8
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.2e-07 60.1 106 41.5
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.2e-07 60.1 39 76.9
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.2e-07 60.1 39 76.9
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 2.7e-07 58.9 111 56.8
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 7.7e-07 57.4 120 38.3
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 1.7e-06 56.2 103 43.7
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.9e-06 55.5 108 53.7
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 2.9e-06 55.5 120 37.5
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.9e-06 55.5 110 54.5
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 5.0e-06 54.7 37 64.9
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 6.6e-06 54.3 96 45.8
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 8.6e-06 53.9 105 54.3
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 8.6e-06 53.9 111 52.3


User provided reference genes

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