Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3343 Fragaria x ananassa HOM05D006395 ORTHO05D007894 2.2e-168 595.9 381 100.0
FvH4_3g39360 Fragaria vesca HOM05D006395 ORTHO05D007894 1.6e-166 589.7 381 99.2
FAN25G1635 Fragaria x ananassa HOM05D006395 ORTHO05D007894 6.6e-165 584.3 381 98.7
FAN21G1642 Fragaria x ananassa HOM05D006395 ORTHO05D007894 2.4e-162 575.9 395 94.9
RcHm_v2.0_Chr5g0070801 Rosa chinensis HOM05D006395 ORTHO05D007894 4.0e-130 468.8 385 84.9
FAN16G1183 Fragaria x ananassa HOM05D006395 ORTHO05D007894 1.5e-116 423.7 280 84.3
MD03G1062200 Malus domestica HOM05D006395 ORTHO05D007894 2.0e-100 370.2 383 71.5
Prupe.6G052000 Prunus persica HOM05D006395 ORTHO05D007894 1.3e-99 367.5 383 70.2
GSVIVG01024681001 Vitis vinifera HOM05D006395 ORTHO05D007894 7.0e-90 335.1 384 66.7
Potri.001G280500 Populus trichocarpa HOM05D006395 ORTHO05D007894 2.0e-89 333.6 362 67.7
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 2.7e-89 333.2 362 67.7
Manes.18G144200 Manihot esculenta HOM05D006395 ORTHO05D007894 1.3e-88 330.9 363 66.7
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 1.3e-88 330.9 380 65.8
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 1.6e-86 323.9 381 64.6
Atru.chr3.4150 Acer truncatum HOM05D006395 ORTHO05D007894 2.1e-86 323.6 365 66.0
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 2.7e-86 323.2 363 66.7
Thecc.09G354500 Theobroma cacao HOM05D006395 ORTHO05D007894 3.6e-86 322.8 358 66.8
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 4.7e-86 322.4 381 64.6
Cpa.g.sc2.390 Carica papaya HOM05D006395 ORTHO05D007894 5.2e-85 318.9 369 66.7
Psat5g157120 Pisum sativum HOM05D006395 ORTHO05D007894 1.5e-84 317.4 383 62.9
Duzib168G0704 Durio zibethinus HOM05D006395 ORTHO05D007894 2.6e-84 316.6 378 64.6
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 4.1e-82 309.3 364 64.6
Lj6g0016849 Lotus japonicus HOM05D006395 ORTHO05D007894 1.6e-81 307.4 383 63.7
Eucgr.B02227 Eucalyptus grandis HOM05D006395 ORTHO05D007894 2.7e-81 306.6 365 62.7
Sp4g12670 Schrenkiella parvula HOM05D006395 ORTHO05D007894 4.5e-81 305.8 363 63.1
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 5.9e-81 305.4 363 60.9
Medtr3g465570 Medicago truncatula HOM05D006395 ORTHO05D007894 1.7e-80 303.9 368 62.2
Glyma.18G059000 Glycine max HOM05D006395 ORTHO05D007894 5.0e-80 302.4 376 60.9
PSO170G0213 Papaver somniferum HOM05D006395 ORTHO05D007894 5.0e-80 302.4 371 63.9
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 1.9e-79 300.4 374 63.4
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 2.5e-79 300.1 360 64.4
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 1.6e-78 297.4 377 62.3
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 4.7e-78 295.8 363 63.4
Actinidia27062 Actinidia chinensis HOM05D006395 ORTHO05D007894 1.0e-77 294.7 361 65.7
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 1.8e-77 293.9 363 60.3
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 1.8e-77 293.9 365 64.4
Lalb_Chr18g0051251 Lupinus albus HOM05D006395 ORTHO05D007894 1.8e-77 293.9 382 59.9
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 3.0e-77 293.1 363 62.3
CiPaw.13G072800 Carya illinoinensis HOM05D006395 ORTHO05D007894 6.8e-77 292.0 363 63.1
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 6.8e-77 292.0 365 63.0
Carub.0004s1124 Capsella rubella HOM05D006395 ORTHO05D007894 8.9e-77 291.6 362 59.7
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 8.9e-77 291.6 361 63.2
THA.LOC104800755 Tarenaya hassleriana HOM05D006395 ORTHO05D007894 8.9e-77 291.6 368 61.7
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 1.2e-76 291.2 368 60.9
Hma1.2p1_0841F.1_g226810 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 1.5e-76 290.8 360 64.2
PSO017G1403 Papaver somniferum HOM05D006395 ORTHO05D007894 1.5e-76 290.8 374 61.8
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 1.5e-76 290.8 369 57.2
Thhalv10016813m.g Eutrema salsugineum HOM05D006395 ORTHO05D007894 5.7e-76 288.9 370 60.5
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 7.5e-76 288.5 370 62.2
BcaB06g28340 Brassica carinata HOM05D006395 ORTHO05D007894 1.7e-75 287.3 361 60.1
BraA04t17818Z Brassica rapa HOM05D006395 ORTHO05D007894 2.2e-75 287.0 361 62.3
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 1.8e-74 283.9 365 62.2
BcaC02g08052 Brassica carinata HOM05D006395 ORTHO05D007894 2.4e-74 283.5 361 61.5
C04p58990 Brassica napus HOM05D006395 ORTHO05D007894 2.4e-74 283.5 361 61.5
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 2.4e-74 283.5 378 61.1
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 5.4e-74 282.3 365 61.9
MSTRG.21234 Avicennia marina HOM05D006395 ORTHO05D007894 9.2e-74 281.6 371 61.2
A04p22790 Brassica napus HOM05D006395 ORTHO05D007894 9.2e-74 281.6 361 61.5
VMungo0540G1476 Vigna mungo HOM05D006395 ORTHO05D007894 2.7e-73 280.0 362 62.7
BcaC02g08055 Brassica carinata HOM05D006395 ORTHO05D007894 3.5e-73 279.6 361 57.6
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 3.5e-73 279.6 368 62.0
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 1.0e-72 278.1 364 61.5
EL10Ac7g15889 Beta vulgaris HOM05D006395 ORTHO05D007894 1.7e-72 277.3 363 59.8
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 1.7e-72 277.3 361 62.3
Ciclev10028704m.g Citrus clementina HOM05D006395 ORTHO05D007894 8.6e-72 275.0 361 62.3
TPR.G32918 Trifolium pratense HOM05D006395 ORTHO05D007894 8.6e-72 275.0 357 61.6
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 3.3e-71 273.1 362 61.3
Aqoxy1G01323 Aquilegia oxysepala HOM05D006395 ORTHO05D007894 8.0e-70 268.5 389 58.6
HPP92_025106 Vanilla planifolia HOM05D006395 ORTHO05D007894 8.0e-70 268.5 369 59.1
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 1.5e-68 264.2 238 63.0
Aa31LG5G6570 Aethionema arabicum HOM05D006395 ORTHO05D007894 3.4e-68 263.1 363 57.3
CDE12G0063 Ceratophyllum demersum HOM05D006395 ORTHO05D007894 2.2e-67 260.4 370 58.1
arahy.Tifrunner.gnm1.ann1.P58CS4 Arachis hypogaea HOM05D006395 ORTHO05D007894 1.1e-66 258.1 370 58.1
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 1.1e-66 258.1 361 59.0
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 1.4e-66 257.7 363 58.4
TWI31G1172 Tripterygium wilfordii HOM05D006395 ORTHO05D007894 1.9e-66 257.3 346 61.3
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 7.0e-66 255.4 369 59.1
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 9.2e-66 255.0 327 63.6
Migut.D00855 Erythranthe guttata HOM05D006395 ORTHO05D007894 1.6e-65 254.2 366 51.4
arahy.Tifrunner.gnm1.ann1.775QX7 Arachis hypogaea HOM05D006395 ORTHO05D007894 1.7e-64 250.8 370 57.6
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 5.0e-64 249.2 365 57.8
AUR62036248 Chenopodium quinoa HOM05D006395 ORTHO05D007894 4.3e-63 246.1 367 55.9
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 2.8e-62 243.4 317 63.1
CSS0046123 Camellia sinensis var. sinensis HOM05D006395 ORTHO05D007894 4.7e-62 242.7 239 56.9
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 8.0e-62 241.9 311 63.7
Phvul.006G072100 Phaseolus vulgaris HOM05D006395 ORTHO05D007894 1.3e-59 234.6 221 59.3
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 6.4e-59 232.3 369 55.6
MBI15_g36485_MAGBIO Magnolia biondii HOM05D006395 ORTHO05D007894 1.4e-58 231.1 386 53.9
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 1.6e-57 227.6 285 66.0
BolC4t27411H Brassica oleracea HOM05D006395 ORTHO05D007894 6.0e-57 225.7 201 57.2
Actinidia23216 Actinidia chinensis HOM05D006395 ORTHO05D007894 2.3e-56 223.8 214 59.3
ECA236G5129 Erigeron canadensis HOM05D006395 ORTHO05D007894 2.3e-53 213.8 372 55.6
AUR62009698 Chenopodium quinoa HOM05D006395 ORTHO05D007894 1.2e-52 211.5 365 51.8
HanXRQChr05g0130471 Helianthus annuus HOM05D006395 ORTHO05D007894 3.2e-50 203.4 364 54.4
Lsat_1_v5_gn_8_111040 Lactuca sativa HOM05D006395 ORTHO05D007894 1.2e-49 201.4 363 53.7
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 3.6e-46 189.9 375 47.2
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 2.4e-45 187.2 198 50.0
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 6.8e-45 185.7 374 44.1
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 3.8e-43 179.9 192 53.6
Hma1.2p1_0841F.1_g226820 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 6.4e-43 179.1 254 65.0
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 1.0e-40 171.8 206 51.9
RcHm_v2.0_Chr5g0070821 Rosa chinensis HOM05D006395 ORTHO05D007894 1.7e-40 171.0 212 67.0
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 6.2e-38 162.5 359 46.0
unitig_0.g1179 Utricularia gibba HOM05D006395 ORTHO05D007894 2.2e-35 154.1 363 48.5
SEGI_13349 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 6.6e-32 142.5 175 49.1
Glyma.11G166200 Glycine max HOM05D006395 ORTHO05D007894 2.5e-31 140.6 138 55.1
Duzib150G1550 Durio zibethinus HOM05D006395 ORTHO05D007894 2.1e-30 137.5 115 60.9
Pp3c8_15530 Physcomitrium patens HOM05D006395 ORTHO05D007894 3.1e-29 133.7 216 35.6
CAN.G241.12 Capsicum annuum HOM05D006395 ORTHO05D007894 1.2e-28 131.7 269 55.0
Os10g0456200 Oryza sativa ssp. japonica HOM05D006395 ORTHO05D007894 1.3e-27 128.3 134 53.7
SEGI_40979 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 4.3e-23 113.2 192 63.5
Nitab4.5_0000967g0090 Nicotiana tabacum HOM05D000734 ORTHO05D002223 2.9e-19 100.5 83 65.1
Cc03_g12890 Coffea canephora HOM05D006395 ORTHO05D007894 1.3e-16 91.7 63 68.3
PSO782G5619 Papaver somniferum HOM05D006395 ORTHO05D007894 1.9e-15 87.8 164 50.6
MD11G1065800 Malus domestica HOM05D006395 ORTHO05D007894 3.3e-15 87.0 113 46.9
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 6.9e-13 79.3 62 59.7
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 9.0e-13 79.0 250 24.8
PSO339G4463 Papaver somniferum HOM05D006395 ORTHO05D007894 2.0e-12 77.8 53 67.9
CBR_g32352 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-12 77.4 131 29.8
Cre16.g684800 Chlamydomonas reinhardtii HOM05D006395 ORTHO05D007894 4.5e-12 76.6 424 36.3
Migut.D00856 Erythranthe guttata HOM05D006395 ORTHO05D007894 2.2e-11 74.3 74 48.6
SEGI_33382 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 2.5e-10 70.9 73 50.7
FAN06G1459 Fragaria x ananassa HOM05D006395 ORTHO05D007894 5.5e-10 69.7 37 89.2
PRCOL_00004668 Prasinoderma coloniale HOM05D006395 ORTHO05D007894 2.1e-09 67.8 378 38.4
PSO675G0236 Papaver somniferum HOM05D006395 ORTHO05D007894 3.0e-08 63.9 94 42.6
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 5.1e-08 63.2 62 51.6
FAN07G0114 Fragaria x ananassa HOM05D005731 ORTHO05D012104 5.1e-08 63.2 32 90.6
MCO14G433 Micromonas commoda HOM05D006395 ORTHO05D007894 2.5e-07 60.8 87 37.9
Nitab4.5_0008731g0020 Nicotiana tabacum HOM05D000734 ORTHO05D002223 1.6e-06 58.2 52 59.6
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 8.2e-06 55.8 64 40.6
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 8.2e-06 55.8 127 36.2
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 8.2e-06 55.8 258 44.2


User provided reference genes

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