Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.1e-146 522.3 262 100.0
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.8e-145 517.3 262 99.2
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 4.1e-142 508.1 274 94.9
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 2.5e-123 445.7 274 81.4
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 1.5e-99 366.7 271 70.1
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 3.1e-97 359.0 272 68.8
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 2.2e-87 326.2 278 61.5
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.9e-86 323.2 278 61.2
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.0e-84 317.4 285 61.4
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 1.0e-84 317.4 252 62.7
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 2.3e-84 316.2 275 61.1
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 2.0e-83 313.2 273 59.7
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.0e-83 313.2 259 62.9
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 3.3e-83 312.4 244 65.2
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 7.4e-83 311.2 278 60.8
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 9.7e-83 310.8 242 66.1
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 9.7e-83 310.8 268 62.3
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 3.7e-82 308.9 274 59.5
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 4.8e-82 308.5 267 60.3
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.1e-81 307.4 274 58.0
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 5.3e-81 305.1 273 58.6
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 5.3e-81 305.1 275 60.7
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 1.5e-80 303.5 274 58.8
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 2.0e-80 303.1 274 58.0
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 3.5e-80 302.4 264 59.1
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.0e-79 300.8 273 57.5
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 1.3e-79 300.4 264 60.2
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 2.9e-79 299.3 278 57.9
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 6.5e-79 298.1 275 57.1
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 8.5e-79 297.7 221 66.5
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 8.5e-79 297.7 279 57.7
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 1.4e-78 297.0 281 57.3
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.4e-78 297.0 273 58.6
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.4e-78 297.0 270 58.1
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 2.5e-78 296.2 206 68.0
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 4.2e-78 295.4 276 58.0
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 4.2e-78 295.4 274 56.6
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.6e-77 293.5 238 62.6
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 6.1e-77 291.6 232 62.9
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.4e-76 290.4 273 56.0
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 1.8e-76 290.0 272 55.9
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 2.3e-76 289.7 259 60.2
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.9e-76 288.9 262 58.4
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 5.2e-76 288.5 278 57.6
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 6.7e-76 288.1 277 55.2
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 1.1e-75 287.3 231 62.3
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.5e-75 287.0 240 61.7
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.5e-75 287.0 251 57.8
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.0e-75 286.6 246 59.3
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 3.3e-75 285.8 276 56.5
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 3.3e-75 285.8 231 62.3
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 4.4e-75 285.4 268 56.0
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 9.7e-75 284.3 240 61.2
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 1.7e-74 283.5 237 59.9
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 1.7e-74 283.5 277 54.2
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 3.7e-74 282.3 232 60.3
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 3.7e-74 282.3 242 61.6
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-73 280.8 242 61.2
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 1.8e-73 280.0 198 67.2
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 7.0e-73 278.1 198 67.2
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 1.6e-72 276.9 228 60.5
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 1.3e-71 273.9 253 55.7
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.7e-71 273.5 223 63.2
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 2.2e-71 273.1 274 52.9
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 5.0e-71 271.9 275 54.5
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 8.5e-71 271.2 252 55.2
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.9e-70 270.0 267 51.3
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 3.2e-70 269.2 246 57.7
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.2e-70 269.2 280 52.1
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 9.4e-70 267.7 267 56.2
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.2e-69 267.3 268 53.0
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.6e-69 266.9 252 54.8
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.6e-69 266.9 245 54.3
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.1e-69 266.5 271 53.9
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.1e-69 266.5 271 53.9
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 3.6e-69 265.8 188 70.7
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 4.7e-69 265.4 256 57.8
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 6.1e-69 265.0 252 54.4
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 6.1e-69 265.0 252 54.4
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 6.1e-69 265.0 237 57.0
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.8e-68 263.5 266 53.8
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 3.0e-68 262.7 265 53.6
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 5.2e-68 261.9 233 57.9
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 1.2e-67 260.8 271 51.7
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 1.2e-67 260.8 252 52.8
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 2.0e-67 260.0 210 61.9
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 3.7e-66 255.8 271 51.3
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 4.8e-66 255.4 271 50.9
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 2.9e-63 246.1 160 74.4
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 1.0e-60 237.7 270 51.1
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 6.8e-60 235.0 228 51.8
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 8.8e-60 234.6 234 51.3
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 2.8e-58 229.6 269 47.6
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.8e-58 228.8 189 60.8
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.4e-57 227.3 241 52.7
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 4.1e-57 225.7 205 54.6
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 2.7e-56 223.0 206 55.3
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-55 220.7 183 60.7
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.3e-55 219.9 216 50.5
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.0e-51 206.8 221 51.1
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.4e-49 199.9 202 51.0
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 5.4e-49 198.7 136 73.5
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.6e-47 191.8 209 52.6
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.4e-44 184.1 122 72.1
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.6e-40 169.1 203 49.3
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 5.2e-36 155.6 208 40.4
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 9.8e-35 151.4 112 72.3
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 4.6e-32 142.5 179 45.3
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 9.5e-30 134.8 118 57.6
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.2e-29 134.4 127 54.3
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-28 131.3 146 50.7
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.3e-28 130.2 74 85.1
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.3e-23 114.4 146 45.2
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 3.0e-23 113.2 88 62.5
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.9e-23 112.8 66 78.8
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.3e-22 108.6 245 36.3
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.6e-22 108.2 124 48.4
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.8e-21 106.7 107 51.4
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.0e-20 102.8 71 70.4
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.4e-18 95.5 100 50.0
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 6.6e-15 85.5 82 45.1
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-14 83.6 123 41.5
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 4.3e-14 82.8 93 43.0
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.6e-14 81.6 101 45.5
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 6.2e-13 79.0 97 43.3
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 6.2e-13 79.0 66 51.5
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 2.4e-12 77.0 87 48.3
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.4e-11 73.2 100 44.0
FvH4_1g23850 Fragaria vesca HOM05D005360 ORTHO05D006501 1.9e-09 67.4 113 41.6
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.5e-08 63.2 127 29.9
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 8.7e-07 58.5 43 67.4
SalBow1G4086 Salvia bowleyana HOM05D005360 ORTHO05D006501 3.3e-06 56.6 54 51.9
Cfa022886 Carpinus fangiana HOM05D005360 ORTHO05D006501 4.3e-06 56.2 209 27.8
Gohir.A01G109901 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.6e-06 55.1 49 59.2


User provided reference genes

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