Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3333 Fragaria x ananassa HOM05D000135 ORTHO05D045854 3.4e-33 144.4 74 100.0
FvH4_3g17660 Fragaria vesca HOM05D000135 ORTHO05D045854 1.2e-30 136.0 74 94.6
FAN20G3169 Fragaria x ananassa HOM05D000135 ORTHO05D035263 1.1e-20 102.8 77 72.7
FAN11G2516 Fragaria x ananassa HOM05D000135 ORTHO05D000203 1.9e-20 102.1 79 72.2
FAN11G3770 Fragaria x ananassa HOM05D000135 ORTHO05D035263 4.3e-20 100.9 77 71.4
FvH4_3g29250 Fragaria vesca HOM05D000135 ORTHO05D000203 3.6e-19 97.8 65 78.5
FvH4_3g19960 Fragaria vesca HOM05D000135 ORTHO05D035263 6.2e-19 97.1 77 68.8
FAN13G1372 Fragaria x ananassa HOM05D000135 ORTHO05D000203 1.8e-18 95.5 72 72.2
FAN08G1839 Fragaria x ananassa HOM05D000135 ORTHO05D000203 5.3e-18 94.0 72 72.2
FAN02G3854 Fragaria x ananassa HOM05D000135 ORTHO05D000203 1.5e-17 92.4 72 72.2
FAN05G4872 Fragaria x ananassa HOM05D000135 ORTHO05D202320 1.5e-17 92.4 62 79.0
FAN20G1180 Fragaria x ananassa HOM05D000135 ORTHO05D000203 7.6e-17 90.1 72 69.4
FAN02G4070 Fragaria x ananassa HOM05D000135 ORTHO05D000203 6.4e-16 87.0 72 66.7
FAN17G0432 Fragaria x ananassa HOM05D000135 ORTHO05D000203 3.2e-15 84.7 70 68.6
FAN22G2044 Fragaria x ananassa HOM05D000135 ORTHO05D000203 3.2e-15 84.7 70 68.6
FvH4_4g33650 Fragaria vesca HOM05D000135 ORTHO05D000203 7.1e-15 83.6 70 67.1
FAN12G1754 Fragaria x ananassa HOM05D000135 ORTHO05D000203 1.6e-14 82.4 70 67.1
RcHm_v2.0_Chr4g0443111 Rosa chinensis HOM05D000135 ORTHO05D000203 2.7e-14 81.6 70 65.7
MELO3C005272.2 Cucumis melo HOM05D000135 ORTHO05D000203 3.7e-11 71.2 70 54.3
CsaV3_5G028160 Cucumis sativus L. HOM05D000135 ORTHO05D000203 3.7e-11 71.2 70 54.3
Haze_10887 Corylus avellana HOM05D000135 ORTHO05D000203 4.8e-11 70.9 70 55.7
MD16G1019200 Malus domestica HOM05D000135 ORTHO05D000203 4.8e-11 70.9 56 66.1
Sed0019161 Sechium edule HOM05D000135 ORTHO05D000203 6.2e-11 70.5 70 52.9
Nn8g39497 Nelumbo nucifera HOM05D000135 ORTHO05D000203 1.1e-10 69.7 70 54.3
SGA_v2.0_scaffold139G35436 Striga asiatica HOM05D000135 ORTHO05D000203 1.1e-10 69.7 70 54.3
TWI53G1610 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 1.1e-10 69.7 70 54.3
Sed0014744 Sechium edule HOM05D000135 ORTHO05D000203 1.4e-10 69.3 70 54.3
Actinidia36629 Actinidia chinensis HOM05D000135 ORTHO05D000203 2.4e-10 68.6 70 55.7
CARHR026450 Cardamine hirsuta HOM05D000135 ORTHO05D000203 2.4e-10 68.6 70 51.4
Hma1.2p1_0015F.1_g010650 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 6.9e-10 67.0 70 52.9
Lj3P864T51 Lonicera japonica HOM05D000135 ORTHO05D000203 1.2e-09 66.2 70 51.4
BcaB03g12048 Brassica carinata HOM05D000135 ORTHO05D000203 1.5e-09 65.9 70 50.0
BcaC01g01660 Brassica carinata HOM05D000135 ORTHO05D000203 1.5e-09 65.9 70 50.0
A08p26720 Brassica napus HOM05D000135 ORTHO05D000203 1.5e-09 65.9 70 50.0
C03p73300 Brassica napus HOM05D000135 ORTHO05D000203 1.5e-09 65.9 70 50.0
BolC3t19626H Brassica oleracea HOM05D000135 ORTHO05D000203 1.5e-09 65.9 70 50.0
BraA08t34618Z Brassica rapa HOM05D000135 ORTHO05D000203 1.5e-09 65.9 70 50.0
MD13G1020800 Malus domestica HOM05D000135 ORTHO05D000203 1.5e-09 65.9 70 55.7
Nn3g18356 Nelumbo nucifera HOM05D000135 ORTHO05D000203 1.5e-09 65.9 70 51.4
Rhsim09G0089800 Rhododendron simsii HOM05D000135 ORTHO05D000203 2.0e-09 65.5 70 50.0
Aa31LG7G9410 Aethionema arabicum HOM05D000135 ORTHO05D000203 2.6e-09 65.1 70 48.6
Haze_10886 Corylus avellana HOM05D000135 ORTHO05D000203 2.6e-09 65.1 70 52.9
Lsat_1_v5_gn_8_46221 Lactuca sativa HOM05D000135 ORTHO05D000203 3.4e-09 64.7 71 52.1
Lalb_Chr10g0095751 Lupinus albus HOM05D000135 ORTHO05D000203 3.4e-09 64.7 70 48.6
Nitab4.5_0000922g0050 Nicotiana tabacum HOM05D000135 ORTHO05D000203 3.4e-09 64.7 70 51.4
Cpa.g.sc2.199 Carica papaya HOM05D000135 ORTHO05D000203 4.5e-09 64.3 70 51.4
HanXRQChr12g0362661 Helianthus annuus HOM05D000135 ORTHO05D000203 4.5e-09 64.3 70 47.1
Solyc01g005370.3 Solanum lycopersicum HOM05D000135 ORTHO05D000203 4.5e-09 64.3 55 61.8
TAR629G2506 Trochodendron aralioides HOM05D000135 ORTHO05D000203 4.5e-09 64.3 70 48.6
Migut.E00473 Erythranthe guttata HOM05D005416 ORTHO05D007956 7.6e-09 63.5 70 50.0
Nitab4.5_0024537g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 7.6e-09 63.5 70 50.0
Psat6g046160 Pisum sativum HOM05D000135 ORTHO05D000203 7.6e-09 63.5 70 54.3
AL1G40290 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 1.3e-08 62.8 70 48.6
Glyma.05G238400 Glycine max HOM05D000135 ORTHO05D000203 1.3e-08 62.8 71 50.7
Solyc04g008000.3 Solanum lycopersicum HOM05D000135 ORTHO05D000203 1.3e-08 62.8 70 51.4
vmacro23116 Vaccinium macrocarpon HOM05D000135 ORTHO05D000203 1.3e-08 62.8 70 50.0
BcaC05g26500 Brassica carinata HOM05D000135 ORTHO05D000203 1.7e-08 62.4 70 47.1
BcaC05g26501 Brassica carinata HOM05D000135 ORTHO05D000203 1.7e-08 62.4 70 47.1
A09p39020 Brassica napus HOM05D000135 ORTHO05D000203 1.7e-08 62.4 70 47.1
C05p25510 Brassica napus HOM05D000135 ORTHO05D000203 1.7e-08 62.4 70 47.1
BolC5t31279H Brassica oleracea HOM05D000135 ORTHO05D000203 1.7e-08 62.4 70 47.1
BraA09t39402Z Brassica rapa HOM05D000135 ORTHO05D000203 1.7e-08 62.4 70 47.1
CSS0029226 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.7e-08 62.4 70 51.4
HanXRQChr15g0476751 Helianthus annuus HOM05D000135 ORTHO05D000203 1.7e-08 62.4 70 50.0
Sp1g23150 Schrenkiella parvula HOM05D000135 ORTHO05D000203 1.7e-08 62.4 70 48.6
Sopen01g001390 Solanum pennellii HOM05D000135 ORTHO05D000203 1.7e-08 62.4 55 60.0
Sopen04g003140 Solanum pennellii HOM05D000135 ORTHO05D000203 1.7e-08 62.4 70 51.4
AT1G24620 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 2.2e-08 62.0 70 48.6
Carub.0001s2547 Capsella rubella HOM05D000135 ORTHO05D000203 2.2e-08 62.0 70 48.6
Ca_17261_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 2.2e-08 62.0 71 49.3
Ca_17282_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 2.2e-08 62.0 71 49.3
BcaC05g26699 Brassica carinata HOM05D000135 ORTHO05D000203 3.8e-08 61.2 70 45.7
Lj2g0017494 Lotus japonicus HOM05D000135 ORTHO05D000203 3.8e-08 61.2 70 50.0
Thhalv10008816m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 4.9e-08 60.8 70 47.1
Lalb_Chr17g0341221 Lupinus albus HOM05D000135 ORTHO05D000203 4.9e-08 60.8 71 49.3
Medtr8g105230 Medicago truncatula HOM05D000135 ORTHO05D000203 4.9e-08 60.8 71 47.9
Psat7g008120 Pisum sativum HOM05D000135 ORTHO05D000203 4.9e-08 60.8 71 47.9
Cc11_g07150 Coffea canephora HOM05D000135 ORTHO05D000203 8.4e-08 60.1 70 50.0
VMungo0251G1448 Vigna mungo HOM05D000135 ORTHO05D000203 8.4e-08 60.1 71 49.3
BcaB03g14015 Brassica carinata HOM05D000135 ORTHO05D000203 1.4e-07 59.3 70 45.7
BcaC06g35247 Brassica carinata HOM05D000135 ORTHO05D000203 1.4e-07 59.3 70 45.7
A07p12360 Brassica napus HOM05D000135 ORTHO05D000203 1.4e-07 59.3 70 45.7
C07p18260 Brassica napus HOM05D000135 ORTHO05D000203 1.4e-07 59.3 70 45.7
BolC7t42336H Brassica oleracea HOM05D000135 ORTHO05D000203 1.4e-07 59.3 70 45.7
BraA07t29017Z Brassica rapa HOM05D000135 ORTHO05D000203 1.4e-07 59.3 70 45.7
Dinv07733 Davidia involucrata HOM05D000135 ORTHO05D000203 1.4e-07 59.3 70 48.6
Lj6P738T35 Lonicera japonica HOM05D000135 ORTHO05D000203 2.5e-07 58.5 70 48.6
VMungo1215G3169 Vigna mungo HOM05D000135 ORTHO05D000203 2.5e-07 58.5 55 54.5
CDE11G0709 Ceratophyllum demersum HOM05D000135 ORTHO05D000203 3.2e-07 58.2 70 47.1
ClCG01G006550 Citrullus lanatus HOM05D000135 ORTHO05D000203 3.2e-07 58.2 44 59.1
Lalb_Chr04g0255621 Lupinus albus HOM05D000135 ORTHO05D000203 3.2e-07 58.2 73 46.6
Phvul.002G320800 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 3.2e-07 58.2 71 47.9
Aqoxy7G02977 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 4.2e-07 57.8 70 47.1
Phvul.003G019600 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 4.2e-07 57.8 55 52.7
QL03p035696 Quercus lobata HOM05D000135 ORTHO05D000203 4.2e-07 57.8 42 66.7
Potri.008G134300 Populus trichocarpa HOM05D000135 ORTHO05D000203 5.5e-07 57.4 44 63.6
Duzib248G1360 Durio zibethinus HOM05D000135 ORTHO05D000203 7.1e-07 57.0 43 62.8
HanXRQChr08g0212471 Helianthus annuus HOM05D000135 ORTHO05D000203 7.1e-07 57.0 68 45.6
Potri.010G107100 Populus trichocarpa HOM05D000135 ORTHO05D000203 7.1e-07 57.0 44 61.4
Dinv10479 Davidia involucrata HOM05D000135 ORTHO05D000203 9.3e-07 56.6 70 47.1
MD12G1080300 Malus domestica HOM05D000135 ORTHO05D000203 9.3e-07 56.6 55 54.5
Cfa015021 Carpinus fangiana HOM05D000135 ORTHO05D000203 1.2e-06 56.2 42 66.7
ECA233G3872 Erigeron canadensis HOM05D000017 ORTHO05D000013 1.2e-06 56.2 70 44.3
QL08p017946 Quercus lobata HOM05D000135 ORTHO05D000203 1.6e-06 55.8 42 64.3
Sc04g0005130 Simmondsia chinensis HOM05D000135 ORTHO05D000203 1.6e-06 55.8 43 62.8
CSS0046747 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 2.1e-06 55.5 70 45.7
CAN.G74.3 Capsicum annuum HOM05D000135 ORTHO05D000203 2.1e-06 55.5 44 61.4
MBI13_g37863_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 2.1e-06 55.5 70 45.7
Nitab4.5_0002414g0100 Nicotiana tabacum HOM05D000135 ORTHO05D000203 2.1e-06 55.5 44 61.4
Peaxi162Scf00337g00915 Petunia axillaris HOM05D000135 ORTHO05D000203 2.1e-06 55.5 44 61.4
Eucgr.B02672 Eucalyptus grandis HOM05D000135 ORTHO05D000203 2.7e-06 55.1 42 61.9
Nitab4.5_0002803g0050 Nicotiana tabacum HOM05D000135 ORTHO05D000203 2.7e-06 55.1 44 59.1
PGR102G1010 Punica granatum HOM05D000135 ORTHO05D000203 2.7e-06 55.1 42 61.9
Sabra10G0078200 Salix brachista HOM05D000135 ORTHO05D000203 2.7e-06 55.1 44 61.4
MSTRG.13622 Avicennia marina HOM05D000135 ORTHO05D000203 3.5e-06 54.7 70 44.3
CANSAT01G1877 Cannabis sativa HOM05D000135 ORTHO05D000203 3.5e-06 54.7 43 60.5
Cfa015020 Carpinus fangiana HOM05D000135 ORTHO05D000203 3.5e-06 54.7 43 62.8
ECA246G0090 Erigeron canadensis HOM05D000135 ORTHO05D000203 3.5e-06 54.7 71 46.5
Atru.chr11.939 Acer truncatum HOM05D000135 ORTHO05D000203 6.0e-06 53.9 42 61.9
EL10Ac1g01710 Beta vulgaris HOM05D000135 ORTHO05D000203 6.0e-06 53.9 42 61.9
CDE05G2750 Ceratophyllum demersum HOM05D000135 ORTHO05D000203 6.0e-06 53.9 44 61.4
Gohir.A03G115000 Gossypium hirsutum HOM05D000135 ORTHO05D000203 6.0e-06 53.9 71 46.5
HanXRQChr17g0566611 Helianthus annuus HOM05D000135 ORTHO05D000203 6.0e-06 53.9 70 45.7
SEGI_31669 Sequoiadendron giganteum HOM05D000135 ORTHO05D000203 6.0e-06 53.9 70 44.3
Gohir.A12G152000 Gossypium hirsutum HOM05D000135 ORTHO05D000203 7.9e-06 53.5 39 64.1
Gohir.D01G140200 Gossypium hirsutum HOM05D000135 ORTHO05D000203 7.9e-06 53.5 42 59.5
Gohir.D12G155600 Gossypium hirsutum HOM05D000135 ORTHO05D000203 7.9e-06 53.5 39 64.1
Gorai.002G172400 Gossypium raimondii HOM05D000135 ORTHO05D000203 7.9e-06 53.5 42 59.5
Gorai.008G168100 Gossypium raimondii HOM05D000135 ORTHO05D000203 7.9e-06 53.5 39 64.1
Lsat_1_v5_gn_3_53361 Lactuca sativa HOM05D000135 ORTHO05D000203 7.9e-06 53.5 42 64.3
SEGI_22464 Sequoiadendron giganteum HOM05D000135 ORTHO05D000203 7.9e-06 53.5 70 45.7
PGSC0003DMG402029470 Solanum tuberosum HOM05D000135 ORTHO05D000203 7.9e-06 53.5 44 59.1
TAR622G0333 Trochodendron aralioides HOM05D000135 ORTHO05D000203 7.9e-06 53.5 44 54.5


User provided reference genes

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