Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.8e-242 840.5 429 100.0
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 1.3e-241 839.3 429 99.8
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 9.5e-237 823.2 429 98.1
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.4e-235 819.3 429 97.4
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 9.0e-219 763.5 431 90.3
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.4e-171 606.7 439 72.4
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 3.3e-165 585.5 446 69.5
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.0e-150 537.3 444 65.5
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.8e-118 430.3 483 53.8
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 4.1e-115 419.1 484 51.9
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 3.9e-113 412.5 508 50.8
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.1e-112 411.0 496 51.6
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.5e-112 410.6 480 51.0
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 1.9e-112 410.2 510 50.8
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.5e-112 409.8 487 52.4
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 9.5e-112 407.9 471 50.7
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 1.2e-111 407.5 484 51.0
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 4.7e-111 405.6 476 50.6
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 6.8e-110 401.7 482 49.6
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 8.9e-110 401.4 500 48.8
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.5e-109 400.6 477 49.7
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 2.0e-109 400.2 477 49.7
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 2.0e-109 400.2 511 49.3
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 3.4e-109 399.4 481 49.3
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 5.8e-109 398.7 483 49.9
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.9e-107 393.7 483 48.9
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.9e-107 393.7 491 50.3
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 1.9e-107 393.7 480 49.0
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 2.1e-106 390.2 469 49.3
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 2.7e-106 389.8 480 48.1
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.3e-105 387.5 470 48.3
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 1.3e-105 387.5 479 48.2
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 6.6e-105 385.2 490 49.8
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.1e-104 384.4 475 50.5
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.5e-104 384.0 487 50.5
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 2.5e-104 383.3 466 50.2
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 3.3e-104 382.9 477 50.7
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 2.1e-103 380.2 479 47.2
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 6.2e-103 378.6 475 49.1
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.4e-102 377.5 466 47.0
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 2.6e-101 373.2 465 48.6
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.6e-101 373.2 530 44.9
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.4e-101 372.9 477 48.2
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 4.4e-101 372.5 483 47.2
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 7.6e-101 371.7 467 46.7
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 7.6e-101 371.7 467 46.7
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 2.2e-100 370.2 502 46.4
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.9e-100 369.8 463 47.1
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 4.9e-100 369.0 477 46.5
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 8.4e-100 368.2 470 47.0
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.1e-99 367.9 477 45.9
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.4e-99 367.5 541 45.7
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 3.2e-99 366.3 477 47.0
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 5.4e-99 365.5 475 44.2
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 1.2e-98 364.4 507 44.8
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 2.7e-98 363.2 453 49.9
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 6.0e-98 362.1 445 50.3
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 7.8e-98 361.7 513 44.4
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.7e-97 360.5 434 50.0
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 3.9e-97 359.4 470 46.2
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 3.9e-97 359.4 488 47.3
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 6.6e-97 358.6 482 46.5
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 8.7e-97 358.2 490 46.7
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.5e-96 357.5 491 47.7
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.9e-96 357.1 477 47.2
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 5.6e-96 355.5 449 49.4
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 7.3e-96 355.1 500 46.6
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.8e-95 353.2 440 51.1
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.8e-94 350.5 500 45.4
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 4.0e-94 349.4 495 45.5
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 6.9e-94 348.6 418 50.2
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.5e-93 347.4 438 50.0
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 5.8e-93 345.5 477 46.3
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 7.6e-93 345.1 476 47.5
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 9.9e-93 344.7 496 45.6
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 2.9e-92 343.2 472 46.2
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 3.8e-92 342.8 401 51.9
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 6.4e-92 342.0 496 45.6
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.1e-91 341.3 480 45.2
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 2.4e-91 340.1 480 46.5
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 3.2e-91 339.7 484 45.0
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.2e-90 337.8 527 43.1
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.2e-90 337.8 527 43.1
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 2.1e-90 337.0 433 47.6
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.3e-87 327.8 532 41.2
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.3e-87 327.8 396 49.0
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.3e-87 327.8 396 49.0
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 2.1e-87 327.0 439 46.7
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 8.1e-87 325.1 395 48.6
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 9.0e-86 321.6 479 43.6
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 3.4e-85 319.7 479 43.4
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 4.5e-85 319.3 432 45.6
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 4.5e-85 319.3 520 39.8
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 5.8e-85 318.9 402 49.8
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 5.8e-85 318.9 452 44.9
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 2.2e-84 317.0 466 44.4
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 3.8e-84 316.2 520 39.2
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.4e-83 314.3 436 45.4
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 3.2e-83 313.2 464 44.2
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 4.6e-82 309.3 435 46.2
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 6.0e-82 308.9 459 42.9
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.3e-81 307.8 365 48.2
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.8e-81 307.4 442 43.0
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.1e-80 304.7 362 49.4
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.8e-78 297.4 430 43.5
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.8e-78 297.4 434 43.1
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 3.1e-78 296.6 340 50.9
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 1.3e-76 291.2 441 42.6
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 9.4e-67 258.5 556 34.5
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 9.4e-67 258.5 454 40.3
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.6e-66 257.7 309 48.2
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.9e-65 253.1 402 43.0
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 5.1e-65 252.7 393 43.3
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.5e-64 251.1 443 39.1
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 8.2e-63 245.4 378 42.3
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.1e-62 245.0 453 38.0
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.7e-60 237.7 332 42.8
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 5.0e-60 236.1 452 38.3
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.7e-58 229.6 341 42.5
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 3.0e-57 226.9 419 39.1
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 2.1e-50 204.1 390 37.4
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.4e-46 190.7 206 55.3
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.2e-42 178.3 732 26.5
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.3e-41 174.1 212 51.9
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 1.5e-40 171.4 207 52.7
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 2.0e-37 161.0 401 33.9
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 2.0e-37 161.0 330 35.5
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.0e-37 161.0 208 45.2
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 2.1e-34 151.0 213 44.6
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 8.0e-34 149.1 212 44.8
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 4.1e-30 136.7 350 30.6
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.3e-28 131.7 672 25.3
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 2.0e-24 117.9 214 36.0
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.8e-22 111.3 204 37.3
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.2e-21 108.6 550 23.6
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 3.5e-21 107.1 548 23.7
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 2.9e-20 104.0 204 35.8
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 2.1e-18 97.8 142 38.0
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.8e-18 97.4 209 35.4
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 4.7e-18 96.7 176 40.3
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.4e-17 95.1 401 26.2
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 2.3e-17 94.4 110 42.7
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 5.2e-17 93.2 114 45.6
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.0e-16 91.3 169 39.6
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 9.8e-16 89.0 90 52.2
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.6e-13 80.1 164 32.9
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 6.0e-13 79.7 561 21.4
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.0e-12 79.0 138 42.0
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.3e-12 78.6 213 28.6
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.7e-12 78.2 225 30.7
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 5.0e-12 76.6 243 30.0
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 4.0e-09 67.0 203 28.6
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 6.8e-09 66.2 89 47.2
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 1.2e-08 65.5 125 42.4
FAN11G0972 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.9e-07 60.8 145 35.9
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.4e-06 58.5 66 43.9
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 7.1e-06 56.2 126 29.4
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 7.1e-06 56.2 46 52.2
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 9.2e-06 55.8 191 23.0


User provided reference genes

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