Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.8e-151 540.0 470 100.0
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 5.1e-151 538.5 470 98.5
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.8e-148 530.0 468 97.6
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.5e-142 510.4 474 85.7
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 1.4e-124 450.7 470 87.9
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 2.3e-106 390.2 262 85.5
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.8e-77 293.1 433 81.3
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 7.3e-73 278.9 492 68.5
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 6.2e-56 222.6 489 64.8
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 3.3e-41 173.7 495 48.3
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 6.9e-39 166.0 488 55.7
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 1.4e-36 158.3 488 58.0
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 1.2e-35 155.2 472 52.5
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 2.1e-35 154.5 477 52.8
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 2.7e-35 154.1 473 58.6
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 1.4e-34 151.8 476 62.2
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 3.9e-34 150.2 486 56.2
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 1.5e-33 148.3 480 58.1
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 1.5e-33 148.3 496 51.0
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 2.0e-33 147.9 484 58.1
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 5.7e-33 146.4 486 58.0
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 3.7e-32 143.7 485 50.9
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 3.7e-32 143.7 477 57.0
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 2.6e-30 137.5 491 57.0
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 2.6e-30 137.5 477 56.6
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 3.4e-30 137.1 502 50.0
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 4.5e-30 136.7 481 51.1
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 4.5e-30 136.7 554 50.5
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 7.7e-30 136.0 268 38.1
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 1.0e-29 135.6 281 37.7
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 1.0e-29 135.6 281 37.7
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 3.8e-29 133.7 491 52.3
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 5.0e-29 133.3 267 38.2
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 6.5e-29 132.9 480 58.8
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 8.5e-29 132.5 492 55.3
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 1.1e-28 132.1 485 52.0
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 1.1e-28 132.1 260 43.1
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 1.9e-28 131.3 500 53.4
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 2.5e-28 131.0 469 55.2
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 2.5e-28 131.0 482 54.6
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 5.5e-28 129.8 477 54.7
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.6e-27 127.1 522 34.3
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 4.7e-27 126.7 456 58.8
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 7.9e-27 125.9 473 47.1
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 1.0e-26 125.6 508 53.3
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 1.4e-26 125.2 271 36.2
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 3.9e-26 123.6 302 33.4
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 5.1e-26 123.2 514 50.4
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 8.8e-26 122.5 516 51.6
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 1.5e-25 121.7 270 38.1
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 2.0e-25 121.3 274 34.7
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 4.4e-25 120.2 501 43.9
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 7.4e-25 119.4 493 44.8
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 1.3e-24 118.6 491 47.5
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 1.7e-24 118.2 486 55.6
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 2.2e-24 117.9 493 37.7
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 4.8e-24 116.7 497 51.1
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.8e-23 114.8 488 56.1
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 1.8e-23 114.8 477 56.0
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 9.1e-23 112.5 495 45.3
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 1.5e-22 111.7 484 53.5
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 2.6e-22 110.9 144 47.9
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 4.5e-22 110.2 495 43.0
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 1.9e-20 104.8 485 37.1
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 1.6e-19 101.7 481 52.8
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 1.6e-19 101.7 479 53.4
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 1.6e-19 101.7 477 50.7
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 3.6e-19 100.5 475 51.2
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 6.1e-19 99.8 489 53.2
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 1.0e-18 99.0 493 52.9
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 1.8e-18 98.2 478 37.9
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 2.3e-18 97.8 487 50.1
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 2.3e-18 97.8 265 31.3
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 5.2e-18 96.7 479 43.8
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 6.7e-18 96.3 476 42.9
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 8.8e-18 95.9 264 34.1
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 1.5e-17 95.1 285 32.3
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 1.5e-17 95.1 316 59.8
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 7.4e-17 92.8 66 65.2
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 7.4e-17 92.8 484 38.4
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 1.7e-16 91.7 481 52.4
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 4.8e-16 90.1 503 52.3
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 4.8e-16 90.1 478 37.9
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 2.4e-15 87.8 479 45.1
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 3.1e-15 87.4 507 40.6
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 9.1e-15 85.9 476 54.8
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 2.6e-14 84.3 55 78.2
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 5.9e-14 83.2 471 41.2
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 7.2e-12 76.3 476 42.2
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 9.4e-12 75.9 478 50.4
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 4.7e-11 73.6 51 70.6
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 6.1e-11 73.2 278 29.5
BcaB08g36440 Brassica carinata HOM05D012474 ORTHO05D008520 1.8e-10 71.6 276 27.9
Sp6g22920 Schrenkiella parvula HOM05D012474 ORTHO05D008520 4.0e-10 70.5 269 32.3
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 3.4e-09 67.4 481 50.7
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 5.7e-09 66.6 473 50.3
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 5.7e-09 66.6 505 50.7
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 1.3e-08 65.5 269 29.0
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 1.7e-08 65.1 269 29.0
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 3.7e-08 63.9 75 44.0
AT5G22320 Arabidopsis thaliana HOM05D012474 ORTHO05D008520 1.8e-07 61.6 479 52.4
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 5.4e-07 60.1 264 28.4
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 7.0e-07 59.7 265 24.5
Hma1.2p1_2164F.1_g315720 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 9.1e-07 59.3 48 58.3
COL.COLO4_22633 Corchorus olitorius HOM05D007535 ORTHO05D008520 3.5e-06 57.4 196 33.2
CSS0011293 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 4.5e-06 57.0 42 66.7
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 5.9e-06 56.6 264 26.9
MD11G1169000 Malus domestica HOM05D007535 ORTHO05D008520 7.7e-06 56.2 149 36.2


User provided reference genes

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