Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.7e-256 887.1 457 100.0
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.2e-247 858.6 460 97.2
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 3.7e-247 857.8 474 95.4
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.9e-235 818.9 446 95.5
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 7.3e-235 817.0 449 94.9
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.1e-233 811.6 450 94.7
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 1.4e-225 786.2 437 93.8
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 3.9e-172 608.6 472 69.5
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 1.6e-165 586.6 444 70.9
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.0e-156 557.4 473 65.8
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 5.2e-156 555.1 468 64.7
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 2.8e-154 549.3 468 64.7
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.1e-153 545.8 468 64.3
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.6e-152 543.5 456 63.2
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.0e-152 543.1 472 63.3
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.5e-152 542.0 468 63.7
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 2.2e-151 539.7 397 72.5
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 8.5e-151 537.7 471 63.1
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 8.5e-151 537.7 465 62.2
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 8.5e-151 537.7 465 62.2
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 3.6e-149 532.3 471 62.0
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 4.7e-149 531.9 475 61.7
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 8.0e-149 531.2 464 62.3
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.4e-148 530.4 469 62.0
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 3.0e-148 529.3 472 61.4
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 4.4e-147 525.4 467 62.7
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 9.7e-147 524.2 473 61.1
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 9.7e-147 524.2 490 59.8
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.3e-146 523.9 428 65.4
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.6e-144 516.9 466 62.0
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 6.5e-143 511.5 469 61.2
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 1.1e-142 510.8 470 60.6
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 2.5e-142 509.6 469 59.5
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.6e-141 505.8 424 64.9
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 3.6e-141 505.8 481 58.6
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 4.7e-141 505.4 466 59.4
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.0e-140 504.2 471 58.2
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 1.8e-140 503.4 436 63.3
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 3.0e-140 502.7 473 59.2
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 5.2e-140 501.9 444 60.6
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 2.6e-139 499.6 464 59.3
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 3.4e-139 499.2 469 60.8
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 4.4e-139 498.8 442 61.8
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 5.7e-139 498.4 462 59.5
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 6.3e-138 495.0 474 58.6
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 8.3e-138 494.6 433 62.4
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.8e-137 493.4 420 61.9
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.8e-137 493.4 464 57.3
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 3.1e-137 492.7 469 60.3
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 7.0e-137 491.5 480 58.1
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 2.0e-136 490.0 483 56.1
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 2.0e-136 490.0 426 62.0
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.7e-135 486.9 465 57.0
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 2.9e-135 486.1 433 61.2
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 2.9e-135 486.1 439 60.8
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 5.0e-135 485.3 466 57.1
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 3.2e-134 482.6 362 68.8
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 4.2e-134 482.3 452 60.0
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 7.2e-134 481.5 466 57.5
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 7.2e-134 481.5 437 61.8
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.2e-133 480.7 440 60.7
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 2.1e-133 479.9 439 60.8
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 2.1e-133 479.9 425 60.7
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 4.7e-133 478.8 428 59.1
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 2.3e-132 476.5 392 65.1
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 6.8e-132 474.9 435 58.9
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 6.8e-132 474.9 480 56.9
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 6.8e-132 474.9 468 55.1
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 5.7e-131 471.9 473 55.8
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 5.7e-131 471.9 433 59.6
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 4.9e-130 468.8 437 59.7
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 6.3e-130 468.4 473 55.6
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.1e-129 467.6 499 53.1
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.4e-129 467.2 437 59.5
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 2.4e-129 466.5 450 57.6
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 4.1e-129 465.7 504 55.2
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 7.0e-129 464.9 465 55.5
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 2.7e-128 463.0 393 62.8
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 3.5e-128 462.6 409 59.2
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 5.9e-128 461.8 428 59.6
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.0e-127 461.1 511 53.0
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 6.6e-127 458.4 472 54.2
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 3.3e-126 456.1 477 52.4
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 3.3e-126 456.1 428 57.9
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 3.3e-126 456.1 456 57.0
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.2e-125 454.1 400 59.5
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.8e-125 453.0 466 54.9
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 3.6e-125 452.6 484 53.3
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 2.3e-124 449.9 390 64.9
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 6.8e-124 448.4 340 68.8
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 2.0e-123 446.8 484 54.3
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 2.0e-123 446.8 411 58.6
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.3e-122 444.1 481 52.6
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 8.3e-122 441.4 416 57.9
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 5.4e-121 438.7 500 52.8
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.6e-120 437.2 475 51.8
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.6e-120 437.2 439 55.6
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 2.7e-120 436.4 439 55.1
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 5.9e-120 435.3 475 51.8
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.1e-118 431.0 367 61.9
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 2.5e-118 429.9 454 53.7
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 3.3e-118 429.5 438 54.6
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 2.0e-115 420.2 379 58.3
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 7.5e-115 418.3 387 60.5
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 9.8e-115 417.9 469 51.4
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.2e-114 416.8 475 50.9
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 3.7e-114 416.0 439 54.9
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 6.4e-114 415.2 469 51.2
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 8.3e-114 414.8 440 52.5
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 8.3e-114 414.8 440 52.5
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 1.1e-113 414.5 462 52.4
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 4.1e-113 412.5 441 51.7
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 9.2e-113 411.4 439 52.2
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 6.0e-112 408.7 350 60.9
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.0e-111 407.9 483 51.3
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 1.7e-111 407.1 442 51.8
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 3.9e-111 406.0 341 64.2
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 6.6e-111 405.2 486 51.0
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.6e-109 400.6 460 49.1
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 1.2e-107 394.4 395 53.4
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 4.4e-107 392.5 399 54.4
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 1.6e-104 384.0 425 50.8
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 1.0e-103 381.3 444 47.3
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.0e-103 381.3 536 44.2
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.3e-102 375.9 264 72.3
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.2e-101 374.4 467 49.0
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 1.4e-100 370.9 478 47.7
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.8e-100 370.5 311 62.1
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 8.9e-100 368.2 326 56.7
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 4.4e-99 365.9 379 53.3
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 2.2e-98 363.6 277 67.5
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 7.8e-96 355.1 436 47.7
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.6e-93 347.4 463 44.7
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 6.9e-92 342.0 316 57.9
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 2.7e-88 330.1 371 50.7
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 3.5e-88 329.7 449 44.5
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 6.0e-88 328.9 423 45.2
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 7.8e-88 328.6 423 44.9
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 3.3e-86 323.2 419 45.3
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 2.8e-85 320.1 488 41.6
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 9.0e-84 315.1 390 46.4
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 1.2e-83 314.7 388 45.9
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 3.5e-80 303.1 448 42.0
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.3e-79 301.2 371 49.3
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.3e-79 300.4 390 44.4
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 3.0e-79 300.1 390 44.4
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 1.3e-77 294.7 295 58.0
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 1.4e-76 291.2 373 44.8
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 9.0e-76 288.5 372 44.9
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 2.1e-69 267.3 207 66.7
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.1e-56 224.2 496 34.9
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 5.1e-55 219.5 169 68.0
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 8.8e-55 218.8 168 67.9
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.2e-48 198.4 200 53.0
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.8e-47 194.5 152 63.2
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 7.4e-46 189.1 125 70.4
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 9.1e-36 155.6 141 58.9
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 2.0e-35 154.5 166 50.6
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.3e-34 151.8 94 76.6
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 5.9e-27 126.3 142 46.5
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 1.3e-26 125.2 145 49.7
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.9e-25 121.3 131 52.7
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.0e-23 113.6 84 64.3
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 8.8e-23 112.5 98 54.1
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 2.6e-22 110.9 94 57.4
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 5.7e-22 109.8 94 55.3
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 2.2e-21 107.8 101 53.5
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 1.6e-19 101.7 166 39.2
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 4.4e-14 83.6 99 49.5
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 5.7e-14 83.2 166 38.6
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 1.8e-12 78.2 280 27.5
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 4.5e-11 73.6 69 56.5
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 5.9e-11 73.2 52 59.6
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 5.9e-11 73.2 52 59.6
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 1.3e-10 72.0 49 67.3
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 5.0e-10 70.1 39 87.2
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 1.5e-09 68.6 71 53.5
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.6e-09 66.6 150 32.7
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 2.1e-08 64.7 202 31.7
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 2.1e-08 64.7 108 40.7


User provided reference genes

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