Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 1.5e-170 602.8 313 100.0
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.5e-170 602.8 313 100.0
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.6e-164 582.8 313 96.5
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.4e-160 569.7 316 94.6
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.9e-157 559.3 313 93.3
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 3.0e-131 472.2 314 79.0
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 6.8e-83 311.6 314 56.4
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 1.4e-72 277.3 315 50.2
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 8.1e-68 261.5 312 49.7
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 1.1e-67 261.2 321 51.1
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 2.3e-67 260.0 315 48.6
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 3.1e-67 259.6 330 49.1
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 5.2e-67 258.8 312 48.4
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 1.4e-64 250.8 313 46.3
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.2e-63 247.7 336 46.7
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 3.0e-62 243.0 318 45.9
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.2e-60 237.7 315 46.0
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 1.4e-59 234.2 321 44.5
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.4e-59 234.2 315 44.8
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 3.1e-59 233.0 314 44.3
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 7.6e-58 228.4 315 44.1
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 7.6e-58 228.4 315 44.1
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 9.9e-58 228.0 317 45.7
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 1.3e-57 227.6 316 43.4
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 1.9e-56 223.8 318 45.3
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 2.4e-56 223.4 291 47.1
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.2e-56 223.0 320 42.8
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 4.2e-56 222.6 316 45.3
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 4.2e-56 222.6 311 44.1
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 1.2e-55 221.1 313 41.9
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 6.0e-55 218.8 313 43.8
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.7e-54 217.2 317 43.8
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 3.9e-54 216.1 315 42.9
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 1.1e-53 214.5 316 41.8
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 3.3e-53 213.0 315 45.1
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 4.3e-53 212.6 317 42.0
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 5.6e-53 212.2 347 40.3
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 2.8e-52 209.9 318 41.5
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 8.1e-52 208.4 317 41.3
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-51 208.0 314 44.6
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 1.8e-51 207.2 314 42.4
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 2.4e-51 206.8 316 41.5
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 4.0e-51 206.1 313 41.2
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 2.0e-50 203.8 312 41.3
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 4.4e-50 202.6 315 39.4
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 4.4e-50 202.6 313 40.6
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 4.4e-50 202.6 317 41.6
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 2.9e-49 199.9 319 42.3
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 2.9e-49 199.9 290 43.8
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 2.9e-49 199.9 313 42.5
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 3.8e-49 199.5 313 41.2
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 4.9e-49 199.1 314 41.7
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 6.4e-49 198.7 314 40.4
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 8.4e-49 198.4 317 39.4
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 8.4e-49 198.4 312 42.9
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 4.2e-48 196.1 319 42.0
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 5.4e-48 195.7 349 37.5
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 5.4e-48 195.7 316 39.2
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 7.1e-48 195.3 312 40.1
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 9.3e-48 194.9 317 42.0
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.2e-47 194.5 328 39.9
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 2.7e-47 193.4 321 38.3
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.7e-46 190.7 314 42.4
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.7e-46 190.7 316 42.1
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 2.3e-46 190.3 319 38.6
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 3.0e-46 189.9 313 40.3
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 5.1e-46 189.1 320 40.9
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 5.1e-46 189.1 351 36.5
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 5.1e-46 189.1 314 38.5
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 1.9e-45 187.2 315 40.3
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 4.3e-45 186.0 319 38.6
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 4.3e-45 186.0 291 40.9
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 5.6e-45 185.7 319 39.8
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 9.6e-45 184.9 317 38.8
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.6e-44 184.1 321 38.6
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 1.6e-44 184.1 338 37.9
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 2.1e-44 183.7 315 38.7
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.1e-43 181.4 343 37.9
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 1.1e-43 181.4 315 38.4
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 3.1e-43 179.9 312 37.8
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 3.1e-43 179.9 318 38.4
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 3.1e-43 179.9 328 38.7
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 9.0e-43 178.3 300 38.3
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 9.0e-43 178.3 316 37.7
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.2e-42 177.9 343 37.9
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.5e-42 177.6 372 34.4
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 2.0e-42 177.2 300 40.3
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 9.9e-42 174.9 313 39.0
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 4.9e-41 172.6 315 36.2
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 8.4e-41 171.8 321 38.6
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 1.1e-40 171.4 311 37.3
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 1.1e-40 171.4 311 37.3
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 9.3e-40 168.3 324 37.0
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 1.6e-39 167.5 311 37.9
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 2.1e-39 167.2 409 33.3
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.0e-38 164.9 325 34.5
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 6.7e-38 162.2 314 36.6
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 4.3e-37 159.5 288 36.1
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 7.4e-37 158.7 314 36.9
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 4.8e-36 156.0 353 34.0
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 3.1e-35 153.3 309 34.3
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 9.0e-35 151.8 313 34.8
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 1.5e-34 151.0 316 35.4
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 2.0e-34 150.6 337 34.1
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.4e-34 149.8 322 35.1
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 8.4e-33 145.2 313 34.8
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 7.9e-31 138.7 314 34.4
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.0e-30 138.3 233 41.6
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 3.0e-30 136.7 311 34.1
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 5.1e-30 136.0 226 38.9
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 4.3e-29 132.9 332 32.5
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.4e-27 127.9 230 39.6
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 9.0e-27 125.2 225 40.4
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 4.5e-26 122.9 227 37.0
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 1.7e-25 120.9 312 30.8
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 2.5e-24 117.1 235 35.3
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 4.2e-24 116.3 239 38.1
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 7.1e-24 115.5 252 34.9
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 1.5e-21 107.8 102 51.0
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 8.2e-20 102.1 314 29.0
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 9.0e-19 98.6 270 28.5
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 4.5e-18 96.3 153 36.6
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 1.0e-17 95.1 93 47.3
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 1.3e-17 94.7 148 37.8
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 1.4e-16 91.3 248 31.0
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 3.6e-15 86.7 308 24.7
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.8e-14 84.3 229 35.4
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 6.7e-14 82.4 231 32.0
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.5e-13 81.3 339 25.7
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 7.4e-13 79.0 121 39.7
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.4e-11 73.9 55 60.0
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 5.3e-11 72.8 106 40.6
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 2.0e-10 70.9 70 48.6
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 2.6e-10 70.5 86 38.4
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.0e-09 68.6 130 36.2
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 1.3e-09 68.2 101 39.6
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.7e-09 67.8 339 23.0
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 3.2e-08 63.5 192 31.2
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 9.4e-08 62.0 210 28.6
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 1.6e-07 61.2 131 35.9
FAN01G2287 Fragaria x ananassa HOM05D021264 ORTHO05D022594 2.7e-07 60.5 124 38.7
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 4.7e-07 59.7 69 43.5
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 7.9e-07 58.9 63 47.6
FAN10G4034 Fragaria x ananassa HOM05D021264 ORTHO05D022594 1.4e-06 58.2 173 36.4
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.8e-06 57.8 42 54.8
FAN06G1478 Fragaria x ananassa HOM05D021264 ORTHO05D022594 3.9e-06 56.6 173 34.7
FAN03G0395 Fragaria x ananassa HOM05D021264 ORTHO05D022594 8.8e-06 55.5 222 27.9
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 8.8e-06 55.5 95 29.5


User provided reference genes

Program Settings