Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.1e-45 183.7 90 100.0
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.4e-17 92.0 102 56.9
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 6.0e-16 87.4 102 54.9
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 3.0e-15 85.1 102 53.9
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.0e-15 85.1 102 53.9
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 3.9e-15 84.7 102 53.9
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.9e-15 84.7 102 53.9
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 8.7e-15 83.6 102 52.9
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.3e-14 81.6 102 52.9
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 2.8e-13 78.6 106 50.9
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.7e-13 77.8 109 50.5
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 6.2e-13 77.4 106 50.0
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 2.4e-12 75.5 106 49.1
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 9.9e-11 70.1 105 48.6
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 1.7e-10 69.3 100 46.0
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.7e-10 69.3 106 46.2
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.7e-10 69.3 106 46.2
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.7e-10 69.3 106 46.2
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 2.9e-10 68.6 106 45.3
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 3.8e-10 68.2 106 46.2
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 3.8e-10 68.2 106 45.3
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 4.9e-10 67.8 106 44.3
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 4.9e-10 67.8 106 45.3
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 6.4e-10 67.4 102 44.1
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 8.4e-10 67.0 96 47.9
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 8.4e-10 67.0 106 44.3
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 1.4e-09 66.2 107 45.8
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 1.9e-09 65.9 107 43.9
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 2.4e-09 65.5 106 42.5
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 2.4e-09 65.5 107 43.9
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 3.2e-09 65.1 106 42.5
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 3.2e-09 65.1 106 45.3
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 3.2e-09 65.1 106 42.5
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 3.2e-09 65.1 106 43.4
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 4.2e-09 64.7 106 43.4
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 4.2e-09 64.7 107 44.9
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 5.4e-09 64.3 107 45.8
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 5.4e-09 64.3 110 42.7
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 5.4e-09 64.3 107 44.9
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 5.4e-09 64.3 106 43.4
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 7.1e-09 63.9 97 44.3
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 9.3e-09 63.5 106 42.5
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 9.3e-09 63.5 105 43.8
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.6e-08 62.8 110 43.6
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.6e-08 62.8 110 43.6
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 1.6e-08 62.8 107 43.9
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 1.6e-08 62.8 107 43.9
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 2.1e-08 62.4 100 44.0
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 2.1e-08 62.4 106 44.3
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 2.1e-08 62.4 96 43.8
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 2.1e-08 62.4 96 43.8
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 2.1e-08 62.4 96 46.9
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 2.7e-08 62.0 105 42.9
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 2.7e-08 62.0 101 44.6
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 4.6e-08 61.2 102 43.1
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 4.6e-08 61.2 101 44.6
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 4.6e-08 61.2 98 45.9
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 6.0e-08 60.8 106 43.4
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 6.0e-08 60.8 101 43.6
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 6.0e-08 60.8 106 43.4
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 7.8e-08 60.5 94 41.5
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 7.8e-08 60.5 102 41.2
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 7.8e-08 60.5 96 40.6
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 1.0e-07 60.1 100 43.0
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 1.0e-07 60.1 95 44.2
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.0e-07 60.1 96 42.7
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 1.3e-07 59.7 106 42.5
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 1.3e-07 59.7 106 42.5
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.3e-07 59.7 88 45.5
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 1.3e-07 59.7 87 46.0
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 1.7e-07 59.3 106 42.5
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 2.3e-07 58.9 93 44.1
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 2.3e-07 58.9 102 41.2
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 3.0e-07 58.5 106 42.5
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 3.0e-07 58.5 106 41.5
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 3.0e-07 58.5 106 42.5
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 3.0e-07 58.5 106 41.5
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 3.0e-07 58.5 45 68.9
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 3.0e-07 58.5 45 68.9
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 3.0e-07 58.5 87 46.0
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 3.9e-07 58.2 107 41.1
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 5.1e-07 57.8 45 66.7
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 5.1e-07 57.8 45 66.7
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 5.1e-07 57.8 102 40.2
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 6.6e-07 57.4 106 41.5
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 6.6e-07 57.4 45 66.7
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 6.6e-07 57.4 99 42.4
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 6.6e-07 57.4 108 42.6
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 8.7e-07 57.0 45 66.7
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 8.7e-07 57.0 106 40.6
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 8.7e-07 57.0 103 42.7
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 1.1e-06 56.6 100 41.0
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 1.1e-06 56.6 106 40.6
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 1.5e-06 56.2 107 40.2
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 1.5e-06 56.2 106 40.6
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 1.5e-06 56.2 102 39.2
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.9e-06 55.8 45 64.4
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 1.9e-06 55.8 106 41.5
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 1.9e-06 55.8 106 41.5
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 2.5e-06 55.5 101 40.6
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 2.5e-06 55.5 86 44.2
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 2.5e-06 55.5 106 41.5
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 3.3e-06 55.1 106 41.5
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 5.6e-06 54.3 45 64.4
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 5.6e-06 54.3 106 39.6
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.3e-06 53.9 24 100.0
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 7.3e-06 53.9 110 40.9
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 7.3e-06 53.9 96 40.6
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 9.6e-06 53.5 87 41.4
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 9.6e-06 53.5 45 62.2


User provided reference genes

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