Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3109 Fragaria x ananassa HOM05D007116 ORTHO05D008255 1.5e-78 296.2 164 100.0
FAN25G2160 Fragaria x ananassa HOM05D007116 ORTHO05D008255 1.0e-69 266.9 164 87.8
FvH4_3g33160 Fragaria vesca HOM05D007116 ORTHO05D008255 1.0e-66 256.9 164 85.4
FAN16G2809 Fragaria x ananassa HOM05D007116 ORTHO05D008255 1.7e-64 249.6 207 70.0
RcHm_v2.0_Chr5g0060481 Rosa chinensis HOM05D007116 ORTHO05D008255 2.9e-61 238.8 168 78.6
Prupe.6G095100 Prunus persica HOM05D007116 ORTHO05D008255 7.7e-54 214.2 168 71.4
Cfa011360 Carpinus fangiana HOM05D007116 ORTHO05D008255 1.0e-50 203.8 161 68.3
MD11G1130500 Malus domestica HOM05D007116 ORTHO05D008255 3.0e-50 202.2 155 69.7
MD03G1105000 Malus domestica HOM05D007116 ORTHO05D008255 8.9e-50 200.7 167 65.9
Dinv31164 Davidia involucrata HOM05D007116 ORTHO05D008255 2.6e-49 199.1 166 65.1
CiPaw.14G078100 Carya illinoinensis HOM05D007116 ORTHO05D008255 3.4e-49 198.7 159 67.3
Thecc.09G259900 Theobroma cacao HOM05D007116 ORTHO05D008255 7.5e-49 197.6 165 63.6
CANSAT54G1028 Cannabis sativa HOM05D007116 ORTHO05D008255 1.7e-48 196.4 155 68.4
Ciclev10029486m.g Citrus clementina HOM05D007116 ORTHO05D008255 3.7e-48 195.3 157 66.2
Duzib168G0016 Durio zibethinus HOM05D007116 ORTHO05D008255 6.3e-48 194.5 164 62.8
CSS0011684 Camellia sinensis var. sinensis HOM05D007116 ORTHO05D008255 1.1e-47 193.7 164 62.8
Gohir.D07G120900 Gossypium hirsutum HOM05D007116 ORTHO05D008255 1.8e-47 193.0 164 63.4
Manes.11G141700 Manihot esculenta HOM05D007116 ORTHO05D008255 1.8e-47 193.0 155 65.8
FAN21G4030 Fragaria x ananassa HOM05D001788 ORTHO05D003523 2.4e-47 192.6 127 78.7
Gorai.001G130300 Gossypium raimondii HOM05D007116 ORTHO05D008255 2.4e-47 192.6 164 63.4
Gohir.A07G116500 Gossypium hirsutum HOM05D007116 ORTHO05D008255 3.1e-47 192.2 164 61.6
TAR633G2203 Trochodendron aralioides HOM05D007116 ORTHO05D008255 3.1e-47 192.2 158 65.8
ClCG02G020980 Citrullus lanatus HOM05D007116 ORTHO05D008255 7.0e-47 191.0 156 67.3
Nitab4.5_0001802g0040 Nicotiana tabacum HOM05D007116 ORTHO05D008255 1.2e-46 190.3 159 62.9
Cpa.g.sc139.73 Carica papaya HOM05D007116 ORTHO05D008255 1.6e-46 189.9 157 63.7
QL01p037299 Quercus lobata HOM05D007116 ORTHO05D008255 2.0e-46 189.5 156 63.5
vmacro14456 Vaccinium macrocarpon HOM05D007116 ORTHO05D008255 3.5e-46 188.7 167 62.9
Psat5g277520 Pisum sativum HOM05D007116 ORTHO05D008255 5.9e-46 188.0 150 65.3
CSS0026412 Camellia sinensis var. sinensis HOM05D007116 ORTHO05D008255 7.8e-46 187.6 148 66.9
CSS0034839 Camellia sinensis var. sinensis HOM05D007116 ORTHO05D008255 7.8e-46 187.6 148 66.9
Lj3g0013477 Lotus japonicus HOM05D007116 ORTHO05D008255 1.0e-45 187.2 143 66.4
Potri.009G004500 Populus trichocarpa HOM05D007116 ORTHO05D008255 1.0e-45 187.2 155 65.8
AUR62006524 Chenopodium quinoa HOM05D007116 ORTHO05D008255 1.3e-45 186.8 163 64.4
Medtr2g093680 Medicago truncatula HOM05D007116 ORTHO05D008255 1.3e-45 186.8 151 64.2
Hma1.2p1_0071F.1_g038060 Hydrangea macrophylla HOM05D007116 ORTHO05D008255 1.7e-45 186.4 159 62.3
Lalb_Chr14g0374781 Lupinus albus HOM05D007116 ORTHO05D008255 1.7e-45 186.4 156 62.2
PSO339G1106 Papaver somniferum HOM05D007116 ORTHO05D008255 2.3e-45 186.0 156 63.5
PSO384G0060 Papaver somniferum HOM05D007116 ORTHO05D008255 2.3e-45 186.0 151 64.9
GSVIVG01025140001 Vitis vinifera HOM05D007116 ORTHO05D008255 2.9e-45 185.7 169 62.1
Ah.01g002760 Amaranthus hybridus HOM05D007116 ORTHO05D008255 5.0e-45 184.9 154 63.6
MELO3C025752.2 Cucumis melo HOM05D007116 ORTHO05D008255 6.6e-45 184.5 157 64.3
Eucgr.J00949 Eucalyptus grandis HOM05D007116 ORTHO05D008255 8.6e-45 184.1 160 61.2
Sabra09G0002000 Salix brachista HOM05D007116 ORTHO05D008255 8.6e-45 184.1 155 65.2
Glyma.15G045500 Glycine max HOM05D007116 ORTHO05D008255 2.5e-44 182.6 164 61.6
Lalb_Chr24g0394461 Lupinus albus HOM05D007116 ORTHO05D008255 5.6e-44 181.4 166 59.6
Rhsim01G0219200 Rhododendron simsii HOM05D007116 ORTHO05D008255 7.3e-44 181.0 167 59.9
MSTRG.21142 Avicennia marina HOM05D007116 ORTHO05D008255 1.2e-43 180.3 164 60.4
Glyma.13G328300 Glycine max HOM05D007116 ORTHO05D008255 2.1e-43 179.5 157 63.1
EL10Ac9g22473 Beta vulgaris HOM05D007116 ORTHO05D008255 2.8e-43 179.1 162 61.1
Sc06g0010500 Simmondsia chinensis HOM05D007116 ORTHO05D008255 2.8e-43 179.1 157 61.8
Nitab4.5_0002129g0050 Nicotiana tabacum HOM05D007116 ORTHO05D008255 3.6e-43 178.7 156 60.9
Phvul.005G137100 Phaseolus vulgaris HOM05D007116 ORTHO05D008255 4.7e-43 178.3 143 65.0
Aqoxy2G01812 Aquilegia oxysepala HOM05D007116 ORTHO05D008255 8.0e-43 177.6 165 58.8
Sed0028029 Sechium edule HOM05D007116 ORTHO05D008255 1.4e-42 176.8 158 62.7
Atru.chr3.3688 Acer truncatum HOM05D007116 ORTHO05D008255 1.8e-42 176.4 162 60.5
DCAR_006049 Daucus carota HOM05D007116 ORTHO05D008255 1.8e-42 176.4 164 55.5
Thhalv10009030m.g Eutrema salsugineum HOM05D007116 ORTHO05D008255 1.8e-42 176.4 155 62.6
Oeu059103.2 Olea europaea HOM05D007116 ORTHO05D008255 1.8e-42 176.4 158 60.1
Sopen11g028590 Solanum pennellii HOM05D007116 ORTHO05D008255 1.8e-42 176.4 157 59.2
Aa31sc281G20 Aethionema arabicum HOM05D007116 ORTHO05D008255 3.0e-42 175.6 161 59.6
Lsat_1_v5_gn_2_97820 Lactuca sativa HOM05D007116 ORTHO05D008255 4.0e-42 175.3 164 58.5
VMungo1080G0278 Vigna mungo HOM05D007116 ORTHO05D008255 5.2e-42 174.9 151 60.9
BraA06t23710Z Brassica rapa HOM05D007116 ORTHO05D008255 6.8e-42 174.5 162 60.5
THA.LOC104826359 Tarenaya hassleriana HOM05D007116 ORTHO05D008255 6.8e-42 174.5 162 60.5
Actinidia03745 Actinidia chinensis HOM05D007116 ORTHO05D008255 8.9e-42 174.1 141 62.4
CAN.G309.11 Capsicum annuum HOM05D007116 ORTHO05D008255 8.9e-42 174.1 159 58.5
BcaC05g24710 Brassica carinata HOM05D007116 ORTHO05D008255 2.0e-41 172.9 161 58.4
A06p05040 Brassica napus HOM05D007116 ORTHO05D008255 2.0e-41 172.9 162 59.9
BcaB02g06700 Brassica carinata HOM05D007116 ORTHO05D008255 2.6e-41 172.6 162 59.9
BcaC05g24713 Brassica carinata HOM05D007116 ORTHO05D008255 2.6e-41 172.6 162 59.9
CARHR007740 Cardamine hirsuta HOM05D007116 ORTHO05D008255 2.6e-41 172.6 162 57.4
arahy.Tifrunner.gnm1.ann1.W744GL Arachis hypogaea HOM05D007116 ORTHO05D008255 4.4e-41 171.8 158 57.0
HPP92_003246 Vanilla planifolia HOM05D007116 ORTHO05D008255 4.4e-41 171.8 164 54.9
BolC5t29359H Brassica oleracea HOM05D007116 ORTHO05D008255 5.8e-41 171.4 161 57.8
C05p05980 Brassica napus HOM05D007116 ORTHO05D008255 7.5e-41 171.0 162 59.3
Cc01_g11490 Coffea canephora HOM05D007116 ORTHO05D008255 7.5e-41 171.0 150 58.7
MBI05_g31455_MAGBIO Magnolia biondii HOM05D007116 ORTHO05D008255 7.5e-41 171.0 140 63.6
TWI31G0539 Tripterygium wilfordii HOM05D007116 ORTHO05D008255 1.7e-40 169.9 157 59.2
AT1G07960 Arabidopsis thaliana HOM05D007116 ORTHO05D008255 2.2e-40 169.5 163 58.9
Nn2g10686 Nelumbo nucifera HOM05D007116 ORTHO05D008255 2.9e-40 169.1 180 53.3
Carub.0001s0731 Capsella rubella HOM05D007116 ORTHO05D008255 3.7e-40 168.7 163 58.3
AL1G18290 Arabidopsis lyrata HOM05D007116 ORTHO05D008255 1.1e-39 167.2 163 56.4
Zm00001eb013190 Zea mays HOM05D007116 ORTHO05D008255 1.8e-39 166.4 152 57.2
Migut.D02186 Erythranthe guttata HOM05D007116 ORTHO05D008255 2.4e-39 166.0 168 56.5
SalBow3G4480 Salvia bowleyana HOM05D007116 ORTHO05D008255 9.2e-39 164.1 159 57.2
ATR1159G039 Amborella trichopoda HOM05D007116 ORTHO05D008255 1.6e-38 163.3 159 54.1
arahy.Tifrunner.gnm1.ann1.BKN2Z7 Arachis hypogaea HOM05D007116 ORTHO05D008255 2.0e-38 162.9 170 52.9
Os03g0287900 Oryza sativa ssp. japonica HOM05D007116 ORTHO05D008255 2.7e-38 162.5 148 58.1
unitig_46.g18230 Utricularia gibba HOM05D007116 ORTHO05D008255 3.5e-38 162.2 149 58.4
TWI79G1024 Tripterygium wilfordii HOM05D007116 ORTHO05D008255 2.3e-37 159.5 158 57.6
SGA_v2.0_scaffold61G21169 Striga asiatica HOM05D007116 ORTHO05D008255 8.6e-37 157.5 151 57.0
Haze_23906 Corylus avellana HOM05D007116 ORTHO05D008255 3.3e-36 155.6 130 64.6
ECA238G1748 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.6e-35 152.1 132 57.6
Dinv32784 Davidia involucrata HOM05D007116 ORTHO05D008255 5.2e-34 148.3 128 63.3
PGSC0003DMG400019678 Solanum tuberosum HOM05D007116 ORTHO05D008255 5.2e-34 148.3 195 45.6
Hma1.2p1_0071F.1_g038070 Hydrangea macrophylla HOM05D007116 ORTHO05D008255 8.9e-34 147.5 95 70.5
Ah.01g015030 Amaranthus hybridus HOM05D007116 ORTHO05D008255 1.1e-31 140.6 144 53.5
Solyc11g069690.3 Solanum lycopersicum HOM05D007116 ORTHO05D008255 3.2e-31 139.0 126 58.7
CDE02G2612 Ceratophyllum demersum HOM05D007116 ORTHO05D008255 1.6e-30 136.7 128 53.1
HanXRQChr07g0197431 Helianthus annuus HOM05D007116 ORTHO05D008255 2.7e-30 136.0 131 58.8
CDE09G0756 Ceratophyllum demersum HOM05D007116 ORTHO05D008255 6.0e-30 134.8 116 56.0
SEGI_21083 Sequoiadendron giganteum HOM05D007116 ORTHO05D008255 3.0e-29 132.5 113 58.4
Mapoly0090s0032 Marchantia polymorpha HOM05D007116 ORTHO05D008255 1.2e-27 127.1 145 46.9
Ca_01432_v3 Cicer arietinum L. HOM05D001788 ORTHO05D003523 6.2e-27 124.8 97 62.9
Hund08379 Selenicereus undatus HOM05D007116 ORTHO05D008255 1.8e-26 123.2 100 60.0
AagrBONN_evm.TU.Sc2ySwM_344.3330 Anthoceros agrestis HOM05D007116 ORTHO05D008255 1.2e-25 120.6 156 44.9
Pp3c6_3120 Physcomitrium patens HOM05D007116 ORTHO05D008255 6.4e-24 114.8 152 43.4
SMO145G0025 Selaginella moellendorffii HOM05D007116 ORTHO05D008255 1.4e-23 113.6 156 40.4
Peaxi162Scf00389g00918 Petunia axillaris HOM05D007116 ORTHO05D008255 3.2e-23 112.5 68 73.5
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 4.6e-22 108.6 58 81.0
SHI06054 Sapria himalayana HOM05D007116 ORTHO05D008255 8.6e-21 104.4 62 74.2
Actinidia07116 Actinidia chinensis HOM05D001788 ORTHO05D003523 2.2e-16 89.7 86 57.0
CBR_g3892 Chara braunii HOM05D000172 ORTHO05D008255 1.0e-13 80.9 128 32.0
CBR_g16056 Chara braunii HOM05D007116 ORTHO05D008255 1.7e-13 80.1 140 35.0
CBR_g16054 Chara braunii HOM05D002981 ORTHO05D008255 1.5e-12 77.0 140 33.6
Cre16.g692751 Chlamydomonas reinhardtii HOM05D002981 ORTHO05D008255 1.9e-12 76.6 81 37.0
CBR_g19043 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-10 70.5 126 30.2
arahy.Tifrunner.gnm1.ann1.MGF3V6 Arachis hypogaea HOM05D007116 ORTHO05D008255 6.9e-10 68.2 103 41.7
Hma1.2p1_0008F-1.1_g005760 Hydrangea macrophylla HOM05D002981 ORTHO05D003725 1.4e-07 60.5 125 32.8
Ah.04g158080 Amaranthus hybridus HOM05D007116 ORTHO05D008255 1.9e-07 60.1 66 48.5
arahy.Tifrunner.gnm1.ann1.VAQ4DL Arachis hypogaea HOM05D002981 ORTHO05D003725 1.9e-07 60.1 71 42.3
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 1.9e-07 60.1 71 42.3
arahy.Tifrunner.gnm1.ann1.FDR7V2 Arachis hypogaea HOM05D002981 ORTHO05D003725 2.4e-07 59.7 71 42.3
Gohir.A07G127500 Gossypium hirsutum HOM05D002981 ORTHO05D003725 2.4e-07 59.7 86 38.4
Glyma.10G014700 Glycine max HOM05D002981 ORTHO05D003725 3.2e-07 59.3 71 40.8
Gorai.001G143100 Gossypium raimondii HOM05D002981 ORTHO05D003725 4.2e-07 58.9 86 38.4
Phvul.007G215900 Phaseolus vulgaris HOM05D002981 ORTHO05D003725 4.2e-07 58.9 71 40.8
VMungo0720G0399 Vigna mungo HOM05D002981 ORTHO05D003725 4.2e-07 58.9 71 40.8
Nn3g21634 Nelumbo nucifera HOM05D002981 ORTHO05D003725 7.1e-07 58.2 71 40.8
Nn4g25650 Nelumbo nucifera HOM05D002981 ORTHO05D003725 7.1e-07 58.2 71 40.8
HPP92_016960 Vanilla planifolia HOM05D002981 ORTHO05D003725 7.1e-07 58.2 86 34.9
Glyma.02G014000 Glycine max HOM05D002981 ORTHO05D003725 9.3e-07 57.8 71 39.4
Ca_10298_v3 Cicer arietinum L. HOM05D002981 ORTHO05D003725 1.2e-06 57.4 71 39.4
MCO16G478 Micromonas commoda HOM05D002981 ORTHO05D008255 1.2e-06 57.4 77 35.1
PRCOL_00005748 Prasinoderma coloniale HOM05D002981 ORTHO05D008255 1.2e-06 57.4 122 32.8
TAR633G1423 Trochodendron aralioides HOM05D002981 ORTHO05D003725 1.2e-06 57.4 132 33.3
Lalb_Chr21g0309481 Lupinus albus HOM05D002981 ORTHO05D003725 1.6e-06 57.0 71 36.6
Mapoly0016s0144 Marchantia polymorpha HOM05D002981 ORTHO05D003725 1.6e-06 57.0 87 35.6
C04p00410 Brassica napus HOM05D002981 ORTHO05D003725 3.5e-06 55.8 144 30.6
Duzib138G0226 Durio zibethinus HOM05D002981 ORTHO05D003725 3.5e-06 55.8 153 31.4
Duzib211G0560 Durio zibethinus HOM05D002981 ORTHO05D003725 3.5e-06 55.8 153 30.7
Medtr1g087520 Medicago truncatula HOM05D002981 ORTHO05D003725 3.5e-06 55.8 71 39.4
PGR044G1530 Punica granatum HOM05D002981 ORTHO05D003725 3.5e-06 55.8 133 31.6
A05p00460 Brassica napus HOM05D002981 ORTHO05D003725 4.6e-06 55.5 144 30.6
BraA05t19044Z Brassica rapa HOM05D002981 ORTHO05D003725 4.6e-06 55.5 144 30.6
Thecc.01G310600 Theobroma cacao HOM05D002981 ORTHO05D003725 7.8e-06 54.7 149 30.2


User provided reference genes

Program Settings