Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3099 Fragaria x ananassa HOM05D003659 ORTHO05D004298 6.2e-91 337.4 168 100.0
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 8.5e-56 220.7 117 93.2
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 1.2e-46 190.3 105 88.6
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 4.8e-43 178.3 105 86.7
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 3.1e-42 175.6 105 85.7
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 5.5e-31 138.3 72 94.4
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 1.1e-26 124.0 92 65.2
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 1.8e-26 123.2 90 67.8
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 3.1e-26 122.5 98 62.2
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 9.1e-26 120.9 92 67.4
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 1.6e-25 120.2 72 77.8
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 2.7e-25 119.4 90 62.2
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 3.5e-25 119.0 95 60.0
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 4.5e-25 118.6 90 62.2
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 5.9e-25 118.2 72 77.8
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 7.7e-25 117.9 83 71.1
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.3e-24 117.1 92 65.2
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.3e-24 117.1 92 66.3
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 2.2e-24 116.3 94 63.8
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 6.5e-24 114.8 102 62.7
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 1.9e-23 113.2 101 57.4
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 2.5e-23 112.8 87 63.2
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 3.2e-23 112.5 92 60.9
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 1.6e-22 110.2 75 73.3
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 4.7e-22 108.6 85 61.2
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 1.0e-21 107.5 74 71.6
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 1.0e-21 107.5 74 73.0
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 1.0e-21 107.5 101 58.4
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 1.0e-21 107.5 75 72.0
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 3.0e-21 105.9 114 53.5
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 3.0e-21 105.9 114 53.5
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 4.0e-21 105.5 74 68.9
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 4.0e-21 105.5 74 68.9
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 5.2e-21 105.1 74 68.9
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 5.2e-21 105.1 72 72.2
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 5.2e-21 105.1 88 60.2
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 5.2e-21 105.1 92 58.7
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 6.8e-21 104.8 75 68.0
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 1.5e-20 103.6 73 68.5
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 1.5e-20 103.6 74 70.3
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 1.5e-20 103.6 74 70.3
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 1.5e-20 103.6 74 70.3
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 1.5e-20 103.6 74 70.3
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 1.5e-20 103.6 74 70.3
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 1.5e-20 103.6 77 70.1
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 1.5e-20 103.6 74 66.2
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 2.6e-20 102.8 75 66.7
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 4.4e-20 102.1 77 68.8
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 5.7e-20 101.7 74 70.3
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 1.3e-19 100.5 85 55.3
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 1.7e-19 100.1 102 53.9
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 1.7e-19 100.1 73 68.5
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 2.2e-19 99.8 72 68.1
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 2.8e-19 99.4 72 68.1
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 2.8e-19 99.4 72 66.7
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 3.7e-19 99.0 74 66.2
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 3.7e-19 99.0 72 66.7
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 3.7e-19 99.0 72 66.7
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 4.9e-19 98.6 75 65.3
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 6.3e-19 98.2 75 66.7
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 8.3e-19 97.8 73 71.2
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 8.3e-19 97.8 71 66.2
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 8.3e-19 97.8 72 66.7
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 8.3e-19 97.8 74 66.2
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 8.3e-19 97.8 75 66.7
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 1.1e-18 97.4 72 68.1
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 1.4e-18 97.1 72 66.7
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 1.4e-18 97.1 71 66.2
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 1.8e-18 96.7 75 68.0
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 1.8e-18 96.7 71 66.2
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 2.4e-18 96.3 74 64.9
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 3.1e-18 95.9 73 72.6
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 3.1e-18 95.9 74 64.9
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 4.1e-18 95.5 68 69.1
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 4.1e-18 95.5 74 67.6
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 4.1e-18 95.5 74 67.6
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 5.4e-18 95.1 71 62.0
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 5.4e-18 95.1 78 66.7
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 5.4e-18 95.1 68 73.5
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 5.4e-18 95.1 76 61.8
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 9.2e-18 94.4 74 63.5
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 9.2e-18 94.4 73 65.8
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 1.2e-17 94.0 73 67.1
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 1.2e-17 94.0 72 62.5
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 1.6e-17 93.6 71 64.8
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 1.6e-17 93.6 75 68.0
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 2.0e-17 93.2 75 62.7
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 2.7e-17 92.8 72 65.3
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 2.7e-17 92.8 73 65.8
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 3.5e-17 92.4 74 64.9
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 3.5e-17 92.4 71 63.4
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 5.9e-17 91.7 72 63.9
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 7.7e-17 91.3 74 63.5
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 7.7e-17 91.3 74 64.9
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.0e-16 90.9 72 65.3
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.0e-16 90.9 72 65.3
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 1.0e-16 90.9 74 64.9
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 1.0e-16 90.9 76 63.2
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 1.3e-16 90.5 76 61.8
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 1.3e-16 90.5 72 62.5
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 1.3e-16 90.5 74 63.5
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 1.3e-16 90.5 72 61.1
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 1.7e-16 90.1 77 61.0
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 2.3e-16 89.7 74 63.5
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 3.8e-16 89.0 74 62.2
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 3.8e-16 89.0 73 64.4
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 5.0e-16 88.6 78 61.5
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 6.6e-16 88.2 71 60.6
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 1.5e-15 87.0 75 61.3
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.5e-15 87.0 73 63.0
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 2.5e-15 86.3 75 60.0
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 3.3e-15 85.9 76 63.2
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 4.3e-15 85.5 69 63.8
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 9.5e-15 84.3 88 56.8
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 6.1e-14 81.6 73 60.3
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 6.1e-14 81.6 73 60.3
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 6.1e-14 81.6 45 82.2
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 1.4e-13 80.5 44 81.8
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 1.4e-13 80.5 75 56.0
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 1.4e-13 80.5 44 84.1
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 4.0e-13 79.0 119 42.9
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 5.2e-13 78.6 68 61.8
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 6.8e-13 78.2 44 84.1
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 8.9e-13 77.8 41 85.4
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 8.9e-13 77.8 75 57.3
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 1.2e-12 77.4 44 79.5
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 1.2e-12 77.4 68 58.8
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.5e-12 77.0 78 55.1
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.5e-12 77.0 78 55.1
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 1.5e-12 77.0 78 55.1
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 1.5e-12 77.0 74 58.1
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 1.5e-12 77.0 73 57.5
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 2.6e-12 76.3 73 54.8
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 2.6e-12 76.3 157 36.3
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 2.6e-12 76.3 41 82.9
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 3.4e-12 75.9 77 54.5
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 4.4e-12 75.5 41 80.5
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 4.4e-12 75.5 78 55.1
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 4.4e-12 75.5 77 55.8
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 4.4e-12 75.5 77 55.8
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 5.7e-12 75.1 45 80.0
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 5.7e-12 75.1 42 78.6
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 7.5e-12 74.7 43 74.4
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 7.5e-12 74.7 43 74.4
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 9.8e-12 74.3 75 54.7
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 9.8e-12 74.3 75 54.7
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 1.3e-11 73.9 75 54.7
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 1.3e-11 73.9 75 54.7
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.3e-11 73.9 41 78.0
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 2.2e-11 73.2 69 56.5
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 4.9e-11 72.0 84 46.4
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 4.9e-11 72.0 95 44.2
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 6.4e-11 71.6 40 77.5
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 8.3e-11 71.2 39 79.5
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.1e-10 70.9 38 81.6
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 1.4e-10 70.5 40 80.0
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 1.8e-10 70.1 69 55.1
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 3.2e-10 69.3 77 53.2
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 5.4e-10 68.6 65 55.4
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 9.2e-10 67.8 51 62.7
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 2.7e-09 66.2 72 50.0
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 1.3e-08 63.9 45 60.0
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 6.6e-08 61.6 30 90.0
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 6.6e-08 61.6 30 90.0
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 6.6e-08 61.6 30 90.0
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 1.5e-07 60.5 30 86.7
SHI37098 Sapria himalayana HOM05D003659 ORTHO05D004298 1.9e-07 60.1 56 48.2
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 2.5e-07 59.7 29 89.7
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 3.6e-06 55.8 38 63.2


User provided reference genes

Program Settings