Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3088 Fragaria x ananassa HOM05D010166 ORTHO05D210407 6.9e-133 477.2 231 100.0
FAN17G1839 Fragaria x ananassa HOM05D010166 ORTHO05D204969 8.7e-128 460.3 230 97.0
FAN10G3035 Fragaria x ananassa HOM05D010166 ORTHO05D207531 4.3e-127 458.0 230 95.7
FAN28G2015 Fragaria x ananassa HOM05D010166 ORTHO05D205652 4.5e-108 394.8 230 85.7
FAN12G1614 Fragaria x ananassa HOM05D010166 ORTHO05D005239 3.0e-67 259.2 157 83.4
FAN18G0379 Fragaria x ananassa HOM05D010166 ORTHO05D014634 2.7e-60 236.1 120 95.8
FAN24G0636 Fragaria x ananassa HOM05D010166 ORTHO05D010681 5.8e-55 218.4 115 93.0
FAN18G4494 Fragaria x ananassa HOM05D010166 ORTHO05D209891 6.0e-52 208.4 169 67.5
FvH4_5g22560 Fragaria vesca HOM05D010166 ORTHO05D014634 4.3e-50 202.2 100 97.0
FAN10G1464 Fragaria x ananassa HOM05D010166 ORTHO05D014634 1.6e-49 200.3 100 96.0
FAN23G2331 Fragaria x ananassa HOM05D010166 ORTHO05D014634 2.1e-49 199.9 100 96.0
FAN23G2409 Fragaria x ananassa HOM05D010166 ORTHO05D014634 2.1e-49 199.9 100 96.0
FAN18G3261 Fragaria x ananassa HOM05D010166 ORTHO05D014634 2.8e-49 199.5 100 96.0
FAN25G1772 Fragaria x ananassa HOM05D010166 ORTHO05D014634 2.8e-49 199.5 100 96.0
FAN10G3240 Fragaria x ananassa HOM05D010166 ORTHO05D014634 6.2e-49 198.4 100 95.0
FAN13G2777 Fragaria x ananassa HOM05D010166 ORTHO05D014634 8.1e-49 198.0 100 95.0
FAN11G1066 Fragaria x ananassa HOM05D010166 ORTHO05D014634 1.1e-48 197.6 100 95.0
FAN12G0932 Fragaria x ananassa HOM05D010166 ORTHO05D014634 1.8e-48 196.8 100 95.0
FAN25G0135 Fragaria x ananassa HOM05D010166 ORTHO05D014634 2.4e-48 196.4 100 94.0
FAN09G1099 Fragaria x ananassa HOM05D010166 ORTHO05D014634 5.2e-48 195.3 100 95.0
FAN04G2592 Fragaria x ananassa HOM05D010166 ORTHO05D014634 7.6e-39 164.9 87 92.0
FAN08G1398 Fragaria x ananassa HOM05D010166 ORTHO05D199405 8.4e-38 161.4 95 83.2
FAN12G2273 Fragaria x ananassa HOM05D007741 ORTHO05D209008 6.2e-33 145.2 134 57.5
FAN15G3031 Fragaria x ananassa HOM05D007741 ORTHO05D014215 5.4e-29 132.1 119 60.5
FAN15G0375 Fragaria x ananassa HOM05D007741 ORTHO05D014215 4.6e-28 129.0 165 49.1
FAN06G3290 Fragaria x ananassa HOM05D007741 ORTHO05D203466 1.8e-27 127.1 118 61.9
FAN13G2213 Fragaria x ananassa HOM05D007741 ORTHO05D208410 1.3e-25 120.9 98 63.3
FAN22G0864 Fragaria x ananassa HOM05D007741 ORTHO05D014215 1.1e-24 117.9 118 55.9
FAN23G2308 Fragaria x ananassa HOM05D007741 ORTHO05D014215 2.4e-24 116.7 108 59.3
FAN04G0311 Fragaria x ananassa HOM05D007741 ORTHO05D209742 1.5e-23 114.0 115 53.9
RcHm_v2.0_Chr1g0339901 Rosa chinensis HOM05D007741 ORTHO05D016318 2.0e-23 113.6 116 58.6
RcHm_v2.0_Chr1g0346381 Rosa chinensis HOM05D007741 ORTHO05D016318 2.0e-23 113.6 116 58.6
RcHm_v2.0_Chr2g0119361 Rosa chinensis HOM05D007741 ORTHO05D016318 2.0e-23 113.6 116 58.6
RcHm_v2.0_Chr4g0423141 Rosa chinensis HOM05D007741 ORTHO05D016318 2.0e-23 113.6 116 58.6
FAN21G2484 Fragaria x ananassa HOM05D007741 ORTHO05D014215 7.6e-23 111.7 112 57.1
FAN11G1680 Fragaria x ananassa HOM05D007741 ORTHO05D204100 1.2e-20 104.4 103 59.2
RcHm_v2.0_Chr5g0050261 Rosa chinensis HOM05D007741 ORTHO05D014215 4.6e-20 102.4 194 40.7
RcHm_v2.0_Chr1g0351211 Rosa chinensis HOM05D007741 ORTHO05D015647 6.7e-19 98.6 111 52.3
RcHm_v2.0_Chr7g0204591 Rosa chinensis HOM05D007741 ORTHO05D016318 2.5e-18 96.7 120 52.5
RcHm_v2.0_Chr4g0427731 Rosa chinensis HOM05D007741 ORTHO05D006912 4.3e-18 95.9 117 46.2
FAN15G0259 Fragaria x ananassa HOM05D007741 ORTHO05D200480 3.1e-16 89.7 126 42.9
FAN10G2132 Fragaria x ananassa HOM05D007741 ORTHO05D204785 4.0e-16 89.4 143 39.9
FAN12G3907 Fragaria x ananassa HOM05D022609 ORTHO05D029410 6.9e-16 88.6 124 45.2
RcHm_v2.0_Chr3g0465101 Rosa chinensis HOM05D007741 ORTHO05D342996 9.0e-16 88.2 134 41.8
FAN15G0652 Fragaria x ananassa HOM05D007741 ORTHO05D014215 1.5e-15 87.4 108 49.1
RcHm_v2.0_Chr6g0279711 Rosa chinensis HOM05D007741 ORTHO05D016318 1.5e-15 87.4 100 53.0
RcHm_v2.0_Chr1g0358041 Rosa chinensis HOM05D007741 ORTHO05D347005 3.4e-15 86.3 144 44.4
FAN18G4008 Fragaria x ananassa HOM05D007741 ORTHO05D200570 4.5e-15 85.9 86 57.0
RcHm_v2.0_Chr4g0422751 Rosa chinensis HOM05D007741 ORTHO05D016318 1.0e-14 84.7 108 47.2
FAN19G0161 Fragaria x ananassa HOM05D007741 ORTHO05D204998 2.9e-14 83.2 104 49.0
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 4.9e-14 82.4 98 48.0
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 1.1e-13 81.3 100 45.0
FAN02G2687 Fragaria x ananassa HOM05D007741 ORTHO05D211123 2.5e-13 80.1 132 40.9
FAN22G0676 Fragaria x ananassa HOM05D007741 ORTHO05D204708 4.2e-13 79.3 106 48.1
FAN22G2406 Fragaria x ananassa HOM05D007741 ORTHO05D210186 4.2e-13 79.3 106 48.1
FAN27G3337 Fragaria x ananassa HOM05D007741 ORTHO05D016314 5.5e-13 79.0 102 49.0
RcHm_v2.0_Chr4g0442201 Rosa chinensis HOM05D028330 ORTHO05D342349 5.5e-13 79.0 142 42.3
RcHm_v2.0_Chr6g0280951 Rosa chinensis HOM05D007761 ORTHO05D011461 5.5e-13 79.0 113 47.8
RcHm_v2.0_Chr4g0424711 Rosa chinensis HOM05D007741 ORTHO05D006912 2.1e-12 77.0 92 51.1
FAN23G1385 Fragaria x ananassa HOM05D015953 ORTHO05D019200 2.7e-12 76.6 92 50.0
FAN21G0226 Fragaria x ananassa HOM05D007741 ORTHO05D208582 4.6e-12 75.9 91 47.3
FAN02G1663 Fragaria x ananassa HOM05D007741 ORTHO05D014215 7.9e-12 75.1 57 66.7
FAN19G1218 Fragaria x ananassa HOM05D007741 ORTHO05D035834 1.0e-11 74.7 91 49.5
RcHm_v2.0_Chr1g0367541 Rosa chinensis HOM05D007741 ORTHO05D011083 2.3e-11 73.6 164 35.4
FvH4_6g29890 Fragaria vesca HOM05D007741 ORTHO05D014215 5.1e-11 72.4 79 51.9
FAN20G1840 Fragaria x ananassa HOM05D007741 ORTHO05D202158 5.1e-11 72.4 115 40.9
FvH4_5g00140 Fragaria vesca HOM05D007761 ORTHO05D015647 8.7e-11 71.6 100 45.0
FAN10G2127 Fragaria x ananassa HOM05D022609 ORTHO05D029410 1.1e-10 71.2 61 57.4
FAN11G0182 Fragaria x ananassa HOM05D007741 ORTHO05D016318 1.9e-10 70.5 84 52.4
RcHm_v2.0_Chr4g0422711 Rosa chinensis HOM05D007741 ORTHO05D011461 2.5e-10 70.1 112 43.8
RcHm_v2.0_Chr3g0459951 Rosa chinensis HOM05D007741 ORTHO05D342834 2.2e-09 67.0 98 43.9
FAN22G1765 Fragaria x ananassa HOM05D007741 ORTHO05D016314 1.4e-08 64.3 75 46.7
FAN24G3283 Fragaria x ananassa HOM05D007741 ORTHO05D201185 2.4e-08 63.5 110 44.5
FAN23G1305 Fragaria x ananassa HOM05D007528 ORTHO05D029410 3.1e-08 63.2 99 43.4
RcHm_v2.0_Chr1g0330531 Rosa chinensis HOM05D007741 ORTHO05D011461 4.1e-08 62.8 79 45.6
FAN14G3085 Fragaria x ananassa HOM05D007741 ORTHO05D201723 6.9e-08 62.0 134 35.8
FvH4_5g02251 Fragaria vesca HOM05D000005 ORTHO05D000294 1.2e-07 61.2 102 40.2
FAN11G1752 Fragaria x ananassa HOM05D007741 ORTHO05D204122 1.2e-07 61.2 171 34.5
RcHm_v2.0_Chr6g0280101 Rosa chinensis HOM05D007741 ORTHO05D343715 1.2e-07 61.2 79 45.6
RcHm_v2.0_Chr7g0204801 Rosa chinensis HOM05D007741 ORTHO05D016318 1.2e-07 61.2 52 61.5
FAN26G3015 Fragaria x ananassa HOM05D007741 ORTHO05D199990 1.5e-07 60.8 100 42.0
FAN27G1171 Fragaria x ananassa HOM05D007761 ORTHO05D011083 2.6e-07 60.1 95 42.1
FAN08G0049 Fragaria x ananassa HOM05D007741 ORTHO05D210836 3.4e-07 59.7 122 33.6
FAN18G4524 Fragaria x ananassa HOM05D011394 ORTHO05D015655 3.4e-07 59.7 28 89.3
FAN05G2747 Fragaria x ananassa HOM05D015953 ORTHO05D202276 4.5e-07 59.3 177 31.1
FAN12G3425 Fragaria x ananassa HOM05D008445 ORTHO05D011083 4.5e-07 59.3 96 41.7
FAN12G2570 Fragaria x ananassa HOM05D015068 ORTHO05D046416 5.9e-07 58.9 115 37.4
FAN05G2149 Fragaria x ananassa HOM05D007741 ORTHO05D016318 1.0e-06 58.2 56 58.9
RcHm_v2.0_Chr7g0201181 Rosa chinensis HOM05D007741 ORTHO05D014215 1.3e-06 57.8 54 57.4
FAN25G2115 Fragaria x ananassa HOM05D007741 ORTHO05D014215 1.7e-06 57.4 53 54.7
FAN01G0683 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.2e-06 57.0 101 39.6
FAN09G4565 Fragaria x ananassa HOM05D007761 ORTHO05D015647 2.2e-06 57.0 184 34.2
FAN10G3275 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.2e-06 57.0 101 39.6
FAN12G0192 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.2e-06 57.0 101 39.6
FAN12G2794 Fragaria x ananassa HOM05D007741 ORTHO05D210173 2.2e-06 57.0 111 36.0
FAN14G1493 Fragaria x ananassa HOM05D001253 ORTHO05D001086 2.2e-06 57.0 101 39.6
FAN25G1610 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.2e-06 57.0 101 39.6
RcHm_v2.0_Chr6g0312921 Rosa chinensis HOM05D007741 ORTHO05D014215 2.2e-06 57.0 54 59.3
FAN05G5109 Fragaria x ananassa HOM05D007761 ORTHO05D011461 3.8e-06 56.2 101 39.6
FAN14G5222 Fragaria x ananassa HOM05D007741 ORTHO05D208722 3.8e-06 56.2 64 46.9
RcHm_v2.0_Chr6g0277431 Rosa chinensis HOM05D007741 ORTHO05D014215 5.0e-06 55.8 54 55.6
FAN07G1261 Fragaria x ananassa HOM05D007761 ORTHO05D011461 8.5e-06 55.1 95 40.0
FAN24G0104 Fragaria x ananassa HOM05D007741 ORTHO05D208640 8.5e-06 55.1 70 47.1
FAN24G2207 Fragaria x ananassa HOM05D007761 ORTHO05D015647 8.5e-06 55.1 112 39.3
FAN27G1809 Fragaria x ananassa HOM05D007761 ORTHO05D206830 8.5e-06 55.1 104 37.5


User provided reference genes

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