Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 0.0e+00 1541.2 843 100.0
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 0.0e+00 1322.0 744 97.6
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 0.0e+00 1300.0 832 88.5
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 0.0e+00 1268.8 833 86.2
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 0.0e+00 1218.0 742 91.2
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 6.5e-290 1000.7 750 79.6
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.7e-192 677.2 794 58.3
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 4.4e-177 625.9 794 56.4
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 1.2e-169 601.3 794 55.2
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 3.6e-139 500.0 777 51.0
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.0e-137 494.2 789 49.3
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 1.7e-136 491.1 791 49.3
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 2.2e-136 490.7 771 47.3
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 5.4e-135 486.1 785 48.2
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 3.5e-134 483.4 781 47.9
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 9.6e-132 475.3 830 45.8
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.7e-128 464.5 753 46.7
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.0e-125 455.3 794 45.0
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 1.7e-125 454.5 790 44.4
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.5e-124 450.7 786 46.1
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.8e-123 447.2 793 45.9
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.6e-123 446.8 776 45.2
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 6.2e-123 446.0 754 46.6
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 1.4e-122 444.9 741 45.6
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 9.0e-122 442.2 817 43.9
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 2.6e-121 440.7 790 44.6
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 2.2e-120 437.6 744 45.6
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.4e-119 434.9 795 47.7
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.1e-118 431.0 788 45.3
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 7.9e-118 429.1 785 47.0
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 1.8e-117 427.9 766 46.5
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 2.3e-117 427.6 796 47.4
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 3.3e-116 423.7 768 45.1
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 9.6e-116 422.2 780 45.1
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 1.1e-114 418.7 782 42.5
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 6.9e-114 416.0 727 45.1
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.3e-112 411.8 765 47.2
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 2.2e-112 411.0 771 46.4
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 2.5e-111 407.5 784 44.9
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.2e-110 405.2 808 42.8
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 3.0e-109 400.6 761 42.4
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 5.1e-109 399.8 755 43.6
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.5e-108 398.3 779 42.9
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.8e-107 393.3 781 41.9
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 1.1e-106 392.1 886 41.1
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 1.2e-105 388.7 815 43.1
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 4.5e-105 386.7 812 42.9
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 6.5e-104 382.9 747 42.2
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.1e-103 382.1 789 39.8
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 2.5e-103 380.9 787 46.3
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 3.2e-103 380.6 723 42.0
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 1.0e-101 375.6 803 41.8
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.3e-101 374.4 777 42.1
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.1e-100 372.1 749 43.3
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.5e-100 371.7 775 40.4
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.9e-100 371.3 789 41.3
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 3.3e-100 370.5 796 42.7
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.3e-99 368.6 764 43.6
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 6.9e-98 362.8 729 44.2
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 9.0e-98 362.5 762 39.8
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 1.0e-96 359.0 763 43.3
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 2.2e-96 357.8 785 40.9
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 5.0e-96 356.7 746 41.3
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 4.2e-95 353.6 704 43.6
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 2.7e-94 350.9 787 41.8
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.7e-94 350.9 726 39.3
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 3.6e-94 350.5 754 41.8
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 4.6e-94 350.1 772 42.6
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 7.9e-94 349.4 741 40.6
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 1.0e-93 349.0 771 40.5
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 2.3e-93 347.8 773 39.2
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.0e-93 347.4 695 43.0
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 5.1e-93 346.7 776 40.5
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 2.5e-92 344.4 797 40.8
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 4.3e-92 343.6 775 39.7
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 4.3e-92 343.6 747 39.4
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 6.3e-91 339.7 637 46.8
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.1e-90 339.0 813 40.6
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 2.4e-90 337.8 754 41.9
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 9.1e-90 335.9 785 43.1
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 3.4e-89 334.0 735 40.5
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 8.5e-88 329.3 703 42.0
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 3.2e-87 327.4 801 37.8
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.6e-86 325.1 724 37.8
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 2.1e-86 324.7 755 38.8
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 4.7e-86 323.6 792 39.3
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.8e-85 321.6 758 39.2
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 1.5e-84 318.5 732 40.7
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 1.7e-83 315.1 712 40.6
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.7e-83 313.9 755 37.4
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.1e-82 312.4 664 43.2
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.8e-82 311.6 761 37.2
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.5e-81 308.5 809 37.0
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 6.5e-80 303.1 718 41.1
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 2.5e-79 301.2 720 38.5
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 3.2e-79 300.8 761 37.6
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 5.5e-79 300.1 781 37.0
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 5.5e-79 300.1 722 41.4
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 9.4e-79 299.3 830 36.4
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 1.0e-77 295.8 723 38.0
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 3.9e-77 293.9 786 37.7
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.1e-76 292.4 812 37.4
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 4.4e-76 290.4 749 38.7
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 7.4e-76 289.7 682 42.4
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 7.0e-74 283.1 713 36.9
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 3.5e-73 280.8 709 37.7
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 1.7e-72 278.5 814 35.4
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 2.2e-72 278.1 756 38.9
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.1e-71 275.8 767 38.3
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 7.2e-71 273.1 755 36.6
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.6e-70 271.9 771 35.1
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 8.8e-69 266.2 723 36.4
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 3.4e-68 264.2 738 36.6
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 2.2e-67 261.5 791 36.5
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.4e-66 258.8 793 36.7
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.2e-65 255.8 706 33.1
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 1.6e-65 255.4 722 35.0
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 5.7e-60 236.9 747 34.7
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 7.0e-58 229.9 678 34.8
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 2.7e-57 228.0 765 32.3
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 2.7e-57 228.0 765 32.3
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 3.5e-57 227.6 624 34.5
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 7.7e-57 226.5 764 32.3
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 2.8e-54 218.0 775 32.0
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 1.4e-53 215.7 773 33.0
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.0e-52 211.8 746 32.0
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 2.6e-52 211.5 886 31.7
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 4.4e-52 210.7 885 31.3
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.8e-50 205.3 786 31.9
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.1e-50 204.1 749 32.2
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.6e-49 202.2 749 31.5
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 4.5e-49 200.7 668 32.2
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 5.9e-49 200.3 667 32.2
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 1.0e-48 199.5 863 32.4
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 2.9e-48 198.0 685 32.1
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.6e-46 192.2 701 34.0
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 2.3e-45 188.3 748 33.4
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 8.9e-45 186.4 476 40.8
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.0e-44 185.3 774 30.1
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.0e-41 175.3 700 32.7
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 1.7e-40 172.2 353 40.8
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 5.0e-40 170.6 811 30.9
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 5.0e-40 170.6 609 33.5
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 2.1e-38 165.2 712 30.3
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 2.6e-36 158.3 619 33.3
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 3.4e-36 157.9 462 37.2
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.7e-35 155.6 254 45.3
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 8.3e-35 153.3 223 48.4
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.9e-34 152.1 715 30.2
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.2e-33 149.4 350 38.9
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 2.1e-33 148.7 156 55.8
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 3.5e-33 147.9 262 40.8
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 2.3e-32 145.2 736 30.2
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.8e-29 135.6 464 32.5
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 4.0e-29 134.4 133 57.9
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.5e-28 132.5 517 34.2
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 7.6e-28 130.2 170 46.5
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 9.9e-28 129.8 200 44.0
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 2.9e-27 128.3 414 33.6
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 5.4e-26 124.0 170 50.6
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.2e-20 106.3 121 58.7
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.3e-19 102.8 136 52.9
FAN21G3133 Fragaria x ananassa HOM05D012862 ORTHO05D014226 1.9e-18 99.0 78 66.7
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 7.1e-18 97.1 697 26.3
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 4.6e-17 94.4 107 50.5
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.0e-16 93.2 179 36.9
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.8e-13 82.4 48 81.2
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.6e-12 78.6 265 28.7
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 2.9e-11 75.1 367 25.6
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.3e-08 65.5 316 28.2
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 6.6e-08 63.9 76 59.2
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 3.3e-07 61.6 324 28.1
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.8e-06 58.5 319 27.3
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 3.6e-06 58.2 84 48.8
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 6.2e-06 57.4 84 48.8


User provided reference genes

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