Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3064 Fragaria x ananassa HOM05D004796 ORTHO05D016811 1.7e-52 209.1 109 100.0
FvH4_1g18610 Fragaria vesca HOM05D004796 ORTHO05D006527 1.7e-36 156.0 83 97.6
FAN23G2833 Fragaria x ananassa HOM05D004796 ORTHO05D006527 1.7e-36 156.0 83 97.6
FAN26G2906 Fragaria x ananassa HOM05D004796 ORTHO05D006527 1.7e-36 156.0 83 97.6
FAN28G1552 Fragaria x ananassa HOM05D004796 ORTHO05D006527 1.7e-36 156.0 83 97.6
FvH4_3g39110 Fragaria vesca HOM05D004796 ORTHO05D016811 3.7e-36 154.8 86 93.0
RcHm_v2.0_Chr2g0109391 Rosa chinensis HOM05D004796 ORTHO05D006527 1.1e-35 153.3 83 95.2
Duzib187G1710 Durio zibethinus HOM05D004796 ORTHO05D006527 4.1e-35 151.4 86 90.7
MD15G1303800 Malus domestica HOM05D004796 ORTHO05D006527 4.1e-35 151.4 83 94.0
arahy.Tifrunner.gnm1.ann1.P6WLKW Arachis hypogaea HOM05D004796 ORTHO05D006527 5.3e-35 151.0 83 94.0
arahy.Tifrunner.gnm1.ann1.R82CC3 Arachis hypogaea HOM05D004796 ORTHO05D006527 5.3e-35 151.0 83 94.0
Duzib147G0087 Durio zibethinus HOM05D004796 ORTHO05D006527 5.3e-35 151.0 84 92.9
Gohir.A05G255700 Gossypium hirsutum HOM05D004796 ORTHO05D006527 5.3e-35 151.0 84 92.9
Gohir.A12G081500 Gossypium hirsutum HOM05D004796 ORTHO05D006527 5.3e-35 151.0 84 92.9
Gohir.D05G257400 Gossypium hirsutum HOM05D004796 ORTHO05D006527 5.3e-35 151.0 84 92.9
Gohir.D12G078300 Gossypium hirsutum HOM05D004796 ORTHO05D006527 5.3e-35 151.0 84 92.9
Gorai.009G268800 Gossypium raimondii HOM05D004796 ORTHO05D006527 5.3e-35 151.0 84 92.9
CARHR279720 Cardamine hirsuta HOM05D004796 ORTHO05D006527 7.0e-35 150.6 83 94.0
DCAR_010778 Daucus carota HOM05D004796 ORTHO05D006527 7.0e-35 150.6 83 94.0
Phvul.002G008200 Phaseolus vulgaris HOM05D004796 ORTHO05D006527 7.0e-35 150.6 83 94.0
VMungo1215G0536 Vigna mungo HOM05D004796 ORTHO05D006527 7.0e-35 150.6 83 94.0
Cfa006794 Carpinus fangiana HOM05D004796 ORTHO05D006527 9.1e-35 150.2 83 94.0
CiPaw.07G039300 Carya illinoinensis HOM05D004796 ORTHO05D006527 9.1e-35 150.2 83 94.0
FAN04G2432 Fragaria x ananassa HOM05D004796 ORTHO05D016811 9.1e-35 150.2 83 95.2
TWI63G0151 Tripterygium wilfordii HOM05D004796 ORTHO05D006527 9.1e-35 150.2 84 91.7
Lsat_1_v5_gn_2_81541 Lactuca sativa HOM05D004796 ORTHO05D006527 1.2e-34 149.8 84 91.7
Lj2C425T5 Lonicera japonica HOM05D004796 ORTHO05D006527 1.2e-34 149.8 83 94.0
Potri.007G000600 Populus trichocarpa HOM05D004796 ORTHO05D006527 1.2e-34 149.8 84 90.5
QL06p038221 Quercus lobata HOM05D004796 ORTHO05D006527 1.2e-34 149.8 83 94.0
Sabra07G0000600 Salix brachista HOM05D004796 ORTHO05D006527 1.2e-34 149.8 84 90.5
Thecc.01G079500 Theobroma cacao HOM05D004796 ORTHO05D006527 1.2e-34 149.8 84 91.7
BcaB04g20026 Brassica carinata HOM05D004796 ORTHO05D006527 1.6e-34 149.4 83 92.8
A09p09140 Brassica napus HOM05D004796 ORTHO05D006527 1.6e-34 149.4 83 92.8
BraA09t36565Z Brassica rapa HOM05D004796 ORTHO05D006527 1.6e-34 149.4 83 92.8
ClCG01G017940 Citrullus lanatus HOM05D004796 ORTHO05D006527 1.6e-34 149.4 83 92.8
Hma1.2p1_0424F.1_g150270 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 1.6e-34 149.4 83 92.8
Sabra08G0002600 Salix brachista HOM05D004796 ORTHO05D006527 1.6e-34 149.4 84 91.7
Sp2g28820 Schrenkiella parvula HOM05D004796 ORTHO05D006527 1.6e-34 149.4 83 92.8
Sed0020912 Sechium edule HOM05D004796 ORTHO05D006527 1.6e-34 149.4 83 92.8
TPR.G28859 Trifolium pratense HOM05D004796 ORTHO05D006527 1.6e-34 149.4 83 92.8
Aa31LG1G16340 Aethionema arabicum HOM05D004796 ORTHO05D006527 2.0e-34 149.1 83 91.6
Haze_03962 Corylus avellana HOM05D004796 ORTHO05D006527 2.0e-34 149.1 83 92.8
Thhalv10004176m.g Eutrema salsugineum HOM05D004796 ORTHO05D006527 2.0e-34 149.1 83 91.6
Glyma.01G197100 Glycine max HOM05D004796 ORTHO05D006527 2.0e-34 149.1 83 92.8
Glyma.11G044600 Glycine max HOM05D004796 ORTHO05D006527 2.0e-34 149.1 83 92.8
Medtr5g014820 Medicago truncatula HOM05D004796 ORTHO05D006527 2.0e-34 149.1 83 91.6
Psat2g172800 Pisum sativum HOM05D004796 ORTHO05D006527 2.0e-34 149.1 83 92.8
MELO3C007668.2 Cucumis melo HOM05D004796 ORTHO05D006527 2.7e-34 148.7 83 92.8
CsaV3_6G044470 Cucumis sativus L. HOM05D004796 ORTHO05D006527 2.7e-34 148.7 83 92.8
HanXRQChr14g0447651 Helianthus annuus HOM05D004796 ORTHO05D006527 2.7e-34 148.7 83 91.6
Hma1.2p1_0477F.1_g160960 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 2.7e-34 148.7 83 92.8
Hma1.2p1_1953F.1_g308840 Hydrangea macrophylla HOM05D004796 ORTHO05D006527 2.7e-34 148.7 83 92.8
GSVIVG01003606001 Vitis vinifera HOM05D004796 ORTHO05D006527 2.7e-34 148.7 83 92.8
BcaC04g23250 Brassica carinata HOM05D004796 ORTHO05D006527 3.5e-34 148.3 83 91.6
BolC9t53963H Brassica oleracea HOM05D004796 ORTHO05D006527 3.5e-34 148.3 83 91.6
Ca_24663_v3 Cicer arietinum L. HOM05D004796 ORTHO05D006527 3.5e-34 148.3 83 92.8
Nn5g30704 Nelumbo nucifera HOM05D004796 ORTHO05D006527 3.5e-34 148.3 83 91.6
ATR1120G045 Amborella trichopoda HOM05D004796 ORTHO05D006527 4.5e-34 147.9 83 91.6
AL8G43440 Arabidopsis lyrata HOM05D004796 ORTHO05D006527 4.5e-34 147.9 83 91.6
AT5G65720 Arabidopsis thaliana HOM05D004796 ORTHO05D006527 4.5e-34 147.9 83 91.6
CANSAT01G0390 Cannabis sativa HOM05D004796 ORTHO05D006527 4.5e-34 147.9 83 92.8
ECA234G3987 Erigeron canadensis HOM05D004796 ORTHO05D006527 4.5e-34 147.9 83 92.8
ECA240G3001 Erigeron canadensis HOM05D004796 ORTHO05D006527 4.5e-34 147.9 83 92.8
Lj2g0010705 Lotus japonicus HOM05D004796 ORTHO05D006527 4.5e-34 147.9 83 91.6
Oeu014312.1 Olea europaea HOM05D004796 ORTHO05D006527 4.5e-34 147.9 83 91.6
Actinidia36405 Actinidia chinensis HOM05D004796 ORTHO05D006527 5.9e-34 147.5 83 91.6
C09p10650 Brassica napus HOM05D004796 ORTHO05D006527 5.9e-34 147.5 83 91.6
CSS0039666 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 5.9e-34 147.5 83 92.8
CSS0047287 Camellia sinensis var. sinensis HOM05D004796 ORTHO05D006527 5.9e-34 147.5 83 92.8
Nn4g24745 Nelumbo nucifera HOM05D004796 ORTHO05D006527 5.9e-34 147.5 83 90.4
PSO063G7095 Papaver somniferum HOM05D004796 ORTHO05D006527 5.9e-34 147.5 83 91.6
PSO782G2535 Papaver somniferum HOM05D004796 ORTHO05D006527 5.9e-34 147.5 83 91.6
THA.LOC104800063 Tarenaya hassleriana HOM05D004796 ORTHO05D016811 5.9e-34 147.5 84 90.5
HPP92_019516 Vanilla planifolia HOM05D004796 ORTHO05D006527 5.9e-34 147.5 83 91.6
GSVIVG01008311001 Vitis vinifera HOM05D004796 ORTHO05D006527 5.9e-34 147.5 83 91.6
Ciclev10025572m.g Citrus clementina HOM05D004796 ORTHO05D006527 7.7e-34 147.1 84 89.3
COL.COLO4_11645 Corchorus olitorius HOM05D004796 ORTHO05D006527 7.7e-34 147.1 84 89.3
Eucgr.I00651 Eucalyptus grandis HOM05D004796 ORTHO05D006527 7.7e-34 147.1 83 90.4
Sc07g0000270 Simmondsia chinensis HOM05D004796 ORTHO05D006527 7.7e-34 147.1 83 90.4
Aqoxy5G00233 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 1.0e-33 146.7 83 91.6
Aqoxy6G02400 Aquilegia oxysepala HOM05D004796 ORTHO05D006527 1.3e-33 146.4 83 90.4
MSTRG.23646 Avicennia marina HOM05D004796 ORTHO05D006527 1.3e-33 146.4 83 90.4
Carub.0008s2662 Capsella rubella HOM05D004796 ORTHO05D006527 1.3e-33 146.4 83 91.6
PSO170G1369 Papaver somniferum HOM05D004796 ORTHO05D006527 1.3e-33 146.4 83 91.6
PSO210G2597 Papaver somniferum HOM05D004796 ORTHO05D006527 1.3e-33 146.4 83 91.6
SGA_v2.0_scaffold121G33084 Striga asiatica HOM05D004796 ORTHO05D006527 1.3e-33 146.4 83 90.4
TAR628G0926 Trochodendron aralioides HOM05D004796 ORTHO05D006527 1.3e-33 146.4 83 89.2
Atru.chr3.1085 Acer truncatum HOM05D004796 ORTHO05D006527 1.7e-33 146.0 84 88.1
Dinv26978 Davidia involucrata HOM05D004796 ORTHO05D016811 1.7e-33 146.0 83 91.6
Peaxi162Scf00096g01526 Petunia axillaris HOM05D004796 ORTHO05D006527 1.7e-33 146.0 83 90.4
Peaxi162Scf00854g00110 Petunia axillaris HOM05D004796 ORTHO05D006527 1.7e-33 146.0 83 90.4
PGR004G2229 Punica granatum HOM05D004796 ORTHO05D006527 1.7e-33 146.0 83 90.4
PGSC0003DMG400030629 Solanum tuberosum HOM05D004796 ORTHO05D006527 1.7e-33 146.0 83 90.4
CAN.G1061.4 Capsicum annuum HOM05D004796 ORTHO05D006527 2.2e-33 145.6 83 90.4
CAN.G529.24 Capsicum annuum HOM05D004796 ORTHO05D006527 2.2e-33 145.6 83 89.2
Manes.12G119000 Manihot esculenta HOM05D004796 ORTHO05D006527 2.2e-33 145.6 84 88.1
Cc07_g07590 Coffea canephora HOM05D004796 ORTHO05D006527 2.9e-33 145.2 83 90.4
THA.LOC104798404 Tarenaya hassleriana HOM05D004796 ORTHO05D006527 2.9e-33 145.2 84 89.3
Cpa.g.sc129.49 Carica papaya HOM05D004796 ORTHO05D006527 3.8e-33 144.8 84 88.1
Lalb_Chr09g0323791 Lupinus albus HOM05D004796 ORTHO05D006527 3.8e-33 144.8 84 88.1
Lalb_Chr16g0379061 Lupinus albus HOM05D004796 ORTHO05D006527 3.8e-33 144.8 84 88.1
Nitab4.5_0000396g0100 Nicotiana tabacum HOM05D004796 ORTHO05D006527 3.8e-33 144.8 83 89.2
Nitab4.5_0006325g0030 Nicotiana tabacum HOM05D004796 ORTHO05D006527 3.8e-33 144.8 83 89.2
Prupe.6G213300 Prunus persica HOM05D004796 ORTHO05D006527 3.8e-33 144.8 83 90.4
SGA_v2.0_scaffold269G46256 Striga asiatica HOM05D004796 ORTHO05D006527 3.8e-33 144.8 83 89.2
MBI11_g39360_MAGBIO Magnolia biondii HOM05D004796 ORTHO05D006527 5.0e-33 144.4 83 89.2
SalBow3G1292 Salvia bowleyana HOM05D004796 ORTHO05D006527 5.0e-33 144.4 83 88.0
SalBow3G2368 Salvia bowleyana HOM05D004796 ORTHO05D006527 5.0e-33 144.4 83 88.0
SalBow3G3135 Salvia bowleyana HOM05D004796 ORTHO05D006527 5.0e-33 144.4 83 88.0
Solyc02g091900.4 Solanum lycopersicum HOM05D004796 ORTHO05D006527 5.0e-33 144.4 83 89.2
Sopen02g036470 Solanum pennellii HOM05D004796 ORTHO05D006527 5.0e-33 144.4 83 89.2
Ah.03g139580 Amaranthus hybridus HOM05D004796 ORTHO05D006527 8.5e-33 143.7 83 86.7
HanXRQChr14g0461401 Helianthus annuus HOM05D004796 ORTHO05D006527 8.5e-33 143.7 83 86.7
Os09g0338400 Oryza sativa ssp. japonica HOM05D004796 ORTHO05D006527 8.5e-33 143.7 83 86.7
SEGI_09827 Sequoiadendron giganteum HOM05D004796 ORTHO05D006527 1.1e-32 143.3 83 89.2
AUR62007967 Chenopodium quinoa HOM05D004796 ORTHO05D006527 1.9e-32 142.5 83 86.7
SMO172G0132 Selaginella moellendorffii HOM05D004796 ORTHO05D006527 1.9e-32 142.5 83 86.7
CBR_g17075 Chara braunii HOM05D004796 ORTHO05D006527 3.2e-32 141.7 83 85.5
CBR_g17082 Chara braunii HOM05D004796 ORTHO05D006527 3.2e-32 141.7 83 85.5
Migut.H00312 Erythranthe guttata HOM05D004796 ORTHO05D006527 4.2e-32 141.4 83 86.7
Zm00001eb310290 Zea mays HOM05D004796 ORTHO05D006527 4.2e-32 141.4 83 84.3
Pp3c1_20380 Physcomitrium patens HOM05D004796 ORTHO05D006527 5.5e-32 141.0 84 83.3
Pp3c2_20850 Physcomitrium patens HOM05D004796 ORTHO05D006527 9.4e-32 140.2 83 84.3
CDE01G0270 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 1.2e-31 139.8 83 84.3
CDE02G1131 Ceratophyllum demersum HOM05D004796 ORTHO05D006527 1.2e-31 139.8 83 84.3
MCO07G690 Micromonas commoda HOM05D004796 ORTHO05D006527 2.1e-31 139.0 83 81.9
Dinv23067 Davidia involucrata HOM05D004796 ORTHO05D006527 3.6e-31 138.3 77 90.9
Gorai.008G087200 Gossypium raimondii HOM05D004796 ORTHO05D006527 4.7e-31 137.9 75 94.7
HPP92_019568 Vanilla planifolia HOM05D004796 ORTHO05D016811 6.1e-31 137.5 87 83.9
Aa31LG11G11240 Aethionema arabicum HOM05D004796 ORTHO05D006527 1.4e-30 136.3 84 78.6
Mapoly0184s0007 Marchantia polymorpha HOM05D004796 ORTHO05D006527 1.4e-30 136.3 83 83.1
FvH4_4g11530 Fragaria vesca HOM05D004796 ORTHO05D016811 2.3e-30 135.6 73 95.9
PRCOL_00005106 Prasinoderma coloniale HOM05D004796 ORTHO05D006527 3.4e-29 131.7 83 77.1
Cre02.g146250 Chlamydomonas reinhardtii HOM05D004796 ORTHO05D006527 1.3e-28 129.8 83 74.7
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 4.8e-28 127.9 73 86.3
Haze_27134 Corylus avellana HOM05D004796 ORTHO05D006527 5.9e-26 120.9 83 71.1
EL10Ac6g14948 Beta vulgaris HOM05D004796 ORTHO05D006527 2.5e-24 115.5 67 88.1
Cfa026265 Carpinus fangiana HOM05D004796 ORTHO05D006527 4.0e-22 108.2 82 64.6
TAR381G1547 Trochodendron aralioides HOM05D004796 ORTHO05D006527 5.0e-17 91.3 48 93.8
BcaC01g02817 Brassica carinata HOM05D004796 ORTHO05D016811 1.8e-14 82.8 55 81.8
C03p59950 Brassica napus HOM05D004796 ORTHO05D016811 1.1e-11 73.6 43 83.7
BolC3t18259H Brassica oleracea HOM05D004796 ORTHO05D016811 1.1e-11 73.6 43 83.7
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 1.1e-11 73.6 72 59.7
CAN.G212.10 Capsicum annuum HOM05D000007 ORTHO05D000039 1.8e-06 56.2 53 58.5
HanXRQChr07g0203761 Helianthus annuus HOM05D000214 ORTHO05D000131 5.2e-06 54.7 48 58.3


User provided reference genes

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