Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.1e-234 813.5 402 100.0
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.6e-233 812.4 402 99.8
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.1e-233 812.0 402 99.5
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.7e-233 811.6 402 99.5
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.0e-233 810.4 402 99.5
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 1.7e-232 808.9 402 98.8
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 8.4e-227 790.0 402 96.3
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 8.7e-224 780.0 402 93.5
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.5e-223 779.2 402 94.3
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.5e-223 779.2 402 94.3
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 8.1e-222 773.5 402 92.8
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.1e-221 773.1 402 93.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 1.8e-221 772.3 402 92.8
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 2.4e-221 771.9 402 92.0
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 3.1e-221 771.5 402 93.0
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 6.9e-221 770.4 402 91.8
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 6.9e-221 770.4 402 92.5
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 1.2e-220 769.6 402 91.8
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.4e-220 768.1 402 92.0
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.4e-220 768.1 402 92.0
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 4.4e-220 767.7 402 92.0
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 5.8e-220 767.3 402 91.8
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 7.6e-220 766.9 402 91.5
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 9.9e-220 766.5 402 91.5
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 9.9e-220 766.5 402 91.0
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 91.8
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.8e-219 764.6 402 91.5
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 6.4e-219 763.8 402 91.5
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 8.4e-219 763.5 402 91.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 91.5
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.9e-218 762.3 402 91.5
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.9e-218 762.3 402 91.8
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 91.3
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 91.3
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 90.8
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 90.8
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 90.5
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 91.5
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 90.8
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 90.8
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 91.0
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 90.5
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.8
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 90.3
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 91.5
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 91.5
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 2.3e-216 755.4 402 90.5
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 3.0e-216 755.0 416 88.2
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 90.0
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 3.9e-216 754.6 402 90.3
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 89.6
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 5.1e-216 754.2 401 89.5
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 90.8
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 90.0
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 8.7e-216 753.4 416 88.0
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 91.0
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 89.8
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 89.6
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 90.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 90.3
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 89.3
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 89.3
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.6
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.3
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.8
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.1e-214 748.8 411 88.3
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.3
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.6
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 89.8
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 90.0
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.1
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 87.6
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 88.1
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 6.9e-213 743.8 402 88.1
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 89.3
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.2e-212 743.0 417 86.8
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 87.1
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 89.1
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.1
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 87.6
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 87.6
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 87.6
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 87.6
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 87.6
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 87.8
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 86.3
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 86.1
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 87.3
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 86.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 87.8
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.4e-210 736.1 438 82.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 86.8
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 88.1
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 4.2e-210 734.6 429 84.6
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 85.6
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 88.1
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 86.8
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 86.8
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.3
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 86.6
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 86.6
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 86.6
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 87.8
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 6.0e-209 730.7 402 86.8
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 87.3
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 1.8e-208 729.2 402 86.3
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 8.7e-208 726.9 402 87.8
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.5e-207 726.1 402 86.1
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 3.3e-207 724.9 402 86.8
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 5.6e-207 724.2 419 85.4
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 1.5e-204 716.1 441 80.7
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 5.8e-204 714.1 401 85.0
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 7.6e-204 713.8 402 85.8
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 4.2e-202 708.0 402 83.1
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 1.2e-201 706.4 402 84.1
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 7.9e-201 703.7 400 84.2
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 2.3e-200 702.2 402 86.8
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 3.9e-200 701.4 402 83.8
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 2.4e-197 692.2 375 88.5
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 3.8e-195 684.9 402 85.1
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 1.0e-192 676.8 361 91.4
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 1.8e-192 676.0 402 81.3
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 4.3e-191 671.4 357 89.1
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 5.7e-191 671.0 402 80.1
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 1.4e-189 666.4 402 79.9
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 2.4e-189 665.6 402 78.6
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 7.2e-186 654.1 360 86.4
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 6.1e-185 651.0 402 80.3
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 3.7e-182 641.7 340 90.9
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.7e-179 632.9 401 74.3
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 3.2e-178 628.6 334 90.1
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 8.8e-176 620.5 402 77.4
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 2.6e-175 619.0 402 72.9
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.2e-174 615.9 402 72.4
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 4.1e-173 611.7 402 72.9
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 7.0e-173 610.9 403 71.7
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.5e-172 608.6 403 71.7
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 7.7e-164 580.9 397 69.8
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.0e-163 580.5 402 69.7
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.3e-158 560.8 398 67.8
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 1.4e-152 543.5 289 89.6
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 8.0e-145 517.7 403 67.7
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 1.0e-144 517.3 419 65.4
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 4.7e-137 491.9 402 64.4
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 8.1e-129 464.5 259 84.9
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 8.1e-121 438.0 394 53.8
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.0e-115 421.0 395 54.7
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 5.1e-115 418.7 276 76.1
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 9.3e-109 397.9 219 89.5
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.6e-108 397.1 219 89.0
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 3.5e-108 396.0 219 88.1
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 1.6e-105 387.1 229 82.5
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.3e-83 313.5 300 54.7
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 6.9e-80 302.0 160 89.4
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 5.9e-79 298.9 167 86.8
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 9.1e-56 221.9 116 91.4
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 3.1e-32 143.7 86 79.1
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.9e-30 137.1 352 27.8
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 5.0e-30 136.3 351 29.3
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.1e-16 92.0 47 89.4
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 5.6e-13 79.7 45 75.6
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 3.6e-12 77.0 72 56.9
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-11 75.5 316 24.4


User provided reference genes

Program Settings