Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.0e-222 776.5 437 100.0
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 1.1e-219 766.5 437 98.4
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.5e-218 761.5 437 97.9
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.5e-217 757.3 437 97.5
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 3.3e-208 728.4 437 94.7
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.5e-186 655.2 378 97.6
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 1.3e-185 653.3 438 85.4
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 5.6e-184 647.9 438 83.8
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.7e-161 573.2 439 76.8
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 6.2e-159 564.7 438 74.9
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.6e-157 559.3 325 97.8
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.7e-154 549.3 437 73.0
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 4.6e-154 548.5 437 73.0
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 3.9e-153 545.4 448 71.9
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 1.5e-152 543.5 451 72.3
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 4.3e-152 542.0 451 70.1
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 9.6e-152 540.8 451 69.4
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 4.8e-151 538.5 448 69.2
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 6.2e-151 538.1 429 75.3
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 6.2e-151 538.1 448 69.2
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 4.5e-149 531.9 448 68.5
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 2.2e-148 529.6 449 69.9
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.4e-147 526.9 438 69.2
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.9e-147 526.6 448 69.2
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 2.5e-147 526.2 449 69.0
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 3.2e-147 525.8 449 69.7
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 7.1e-147 524.6 445 69.7
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.6e-146 523.5 438 70.8
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 2.1e-146 523.1 449 67.3
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 2.1e-146 523.1 438 67.6
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 2.7e-146 522.7 467 67.2
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 4.6e-146 521.9 451 67.6
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 4.6e-146 521.9 451 67.6
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 6.7e-145 518.1 445 69.2
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 9.6e-144 514.2 438 68.3
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 2.8e-143 512.7 437 65.7
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 6.2e-143 511.5 436 68.6
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.4e-142 510.4 315 93.0
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 2.4e-142 509.6 440 66.6
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 3.1e-142 509.2 439 67.0
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 9.0e-142 507.7 414 72.2
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.7e-140 503.4 432 67.1
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 4.9e-140 501.9 446 65.7
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 6.5e-140 501.5 449 65.7
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 6.5e-140 501.5 440 67.5
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 6.5e-140 501.5 440 65.5
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 8.4e-140 501.1 441 66.7
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 1.1e-139 500.7 443 67.3
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 1.1e-139 500.7 442 64.3
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 7.1e-139 498.0 439 65.4
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.3e-139 497.7 391 76.7
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 9.3e-139 497.7 456 65.8
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.6e-138 496.9 438 67.6
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 2.1e-138 496.5 450 66.2
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 4.6e-138 495.4 456 63.2
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 5.1e-137 491.9 450 64.7
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 1.1e-136 490.7 456 64.0
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.5e-136 490.3 438 66.0
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.9e-136 490.0 445 65.6
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 3.3e-136 489.2 435 68.0
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 4.3e-136 488.8 447 64.2
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 4.3e-136 488.8 440 64.5
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 7.4e-136 488.0 448 64.1
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 9.7e-136 487.6 433 68.1
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 9.7e-136 487.6 446 63.2
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 9.7e-136 487.6 443 64.6
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.2e-135 486.5 443 66.4
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 4.8e-135 485.3 427 67.0
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 1.1e-134 484.2 435 67.8
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 4.1e-134 482.3 450 66.2
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 4.1e-134 482.3 455 62.6
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 9.0e-134 481.1 435 67.4
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.5e-133 480.3 440 65.7
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 1.5e-133 480.3 443 64.1
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.0e-133 479.9 448 61.8
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 7.7e-133 478.0 451 63.6
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.7e-132 476.9 446 63.7
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 2.2e-132 476.5 435 66.2
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 1.4e-131 473.8 450 63.8
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 3.2e-131 472.6 443 64.8
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 1.2e-130 470.7 436 64.7
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 6.1e-130 468.4 427 65.6
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 6.1e-130 468.4 427 65.6
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 2.5e-128 463.0 445 63.1
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 5.7e-128 461.8 446 61.7
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 7.4e-128 461.5 440 62.5
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 4.1e-126 455.7 447 61.7
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 5.3e-126 455.3 692 47.8
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 3.4e-125 452.6 446 63.0
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 5.9e-125 451.8 436 63.1
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.9e-123 446.8 271 93.0
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 3.2e-123 446.0 413 63.7
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 7.2e-123 444.9 441 63.0
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 4.4e-120 435.6 405 62.2
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.4e-118 430.6 478 56.9
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 4.5e-117 425.6 440 60.5
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 2.2e-116 423.3 436 62.4
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 9.4e-115 417.9 436 61.5
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 5.3e-102 375.6 459 51.6
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 1.1e-99 367.9 358 64.5
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 1.4e-97 360.9 365 58.6
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 3.1e-94 349.7 441 51.2
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 7.0e-94 348.6 432 53.0
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 5.9e-93 345.5 380 56.6
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 3.6e-90 336.3 418 51.7
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 1.0e-89 334.7 456 47.8
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 9.2e-86 321.6 422 50.5
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 2.9e-84 316.6 463 47.3
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 3.3e-83 313.2 456 46.5
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 4.9e-79 299.3 400 48.5
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.9e-75 287.3 278 59.7
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 2.4e-70 270.4 249 69.5
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.3e-68 263.8 308 58.8
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 4.3e-67 259.6 326 54.3
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 5.6e-67 259.2 247 61.9
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 4.4e-64 249.6 224 67.9
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 3.7e-63 246.5 168 84.5
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 3.2e-62 243.4 359 50.7
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.0e-60 238.4 220 63.6
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 2.1e-58 230.7 276 58.0
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.4e-57 227.3 191 72.3
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 7.6e-56 222.2 179 66.5
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 1.4e-54 218.0 149 84.6
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 9.9e-48 195.3 378 36.5
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 7.9e-45 185.7 369 39.0
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 5.6e-43 179.5 443 34.8
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 9.6e-43 178.7 144 70.8
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.0e-41 173.3 166 65.7
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 3.8e-39 166.8 435 33.6
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.4e-38 164.9 134 73.1
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 9.3e-38 162.2 92 95.7
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.2e-37 161.8 273 43.6
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 7.9e-37 159.1 127 73.2
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 5.9e-24 116.3 194 43.8
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 3.8e-23 113.6 68 92.6
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 3.2e-22 110.5 147 51.7
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 2.2e-18 97.8 60 88.3
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 1.4e-17 95.1 107 58.9
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 7.7e-16 89.4 95 58.9
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 2.7e-13 80.9 189 39.7
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 4.8e-10 70.1 170 38.2
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 1.4e-09 68.6 37 94.6


User provided reference genes

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