Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.5e-106 389.4 185 100.0
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 8.5e-49 197.6 238 50.0
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 1.1e-48 197.2 229 51.1
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.5e-48 196.1 238 48.7
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.7e-47 192.6 229 50.2
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 5.0e-41 171.8 231 48.1
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 3.3e-29 132.5 230 40.9
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 7.4e-29 131.3 230 40.4
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 2.9e-17 92.8 256 30.9
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 6.1e-15 85.1 114 41.2
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 5.7e-13 78.6 130 38.5
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 2.8e-12 76.3 153 32.7
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 3.7e-12 75.9 114 35.1
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 3.7e-12 75.9 115 37.4
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 4.8e-12 75.5 115 38.3
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 4.8e-12 75.5 111 39.6
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 8.3e-12 74.7 107 38.3
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.8e-11 73.6 115 34.8
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 5.4e-11 72.0 59 54.2
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 5.4e-11 72.0 172 30.2
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 7.0e-11 71.6 126 33.3
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 9.1e-11 71.2 105 35.2
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 1.2e-10 70.9 114 34.2
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.6e-10 70.5 70 50.0
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 2.0e-10 70.1 114 34.2
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 2.0e-10 70.1 116 37.1
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 2.7e-10 69.7 122 32.0
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 3.5e-10 69.3 117 33.3
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 4.5e-10 68.9 57 54.4
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 4.5e-10 68.9 115 31.3
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 5.9e-10 68.6 55 58.2
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 5.9e-10 68.6 92 38.0
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 7.7e-10 68.2 107 35.5
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 7.7e-10 68.2 124 33.1
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 1.3e-09 67.4 57 56.1
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 1.3e-09 67.4 53 50.9
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.7e-09 67.0 110 36.4
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.3e-09 66.6 110 37.3
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 2.9e-09 66.2 57 52.6
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 2.9e-09 66.2 57 50.9
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 3.8e-09 65.9 106 34.9
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 3.8e-09 65.9 110 35.5
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 5.0e-09 65.5 128 32.0
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 5.0e-09 65.5 139 30.9
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 5.0e-09 65.5 57 52.6
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 6.5e-09 65.1 110 35.5
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 6.5e-09 65.1 67 44.8
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 8.6e-09 64.7 111 36.0
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 8.6e-09 64.7 103 35.9
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 1.1e-08 64.3 55 52.7
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.1e-08 64.3 111 35.1
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.5e-08 63.9 111 36.0
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 1.5e-08 63.9 111 36.0
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 1.5e-08 63.9 57 52.6
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 1.5e-08 63.9 115 34.8
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.5e-08 63.9 130 31.5
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 1.9e-08 63.5 130 32.3
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 3.2e-08 62.8 110 34.5
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 3.2e-08 62.8 57 50.9
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 3.2e-08 62.8 55 49.1
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 3.2e-08 62.8 112 32.1
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 4.2e-08 62.4 74 41.9
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 4.2e-08 62.4 112 35.7
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 5.5e-08 62.0 114 34.2
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 5.5e-08 62.0 57 49.1
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 5.5e-08 62.0 32 71.9
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 7.2e-08 61.6 57 45.6
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 9.5e-08 61.2 35 62.9
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 9.5e-08 61.2 35 62.9
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 9.5e-08 61.2 114 31.6
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 1.2e-07 60.8 177 29.9
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 1.6e-07 60.5 57 54.4
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.6e-07 60.5 57 54.4
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 1.6e-07 60.5 50 48.0
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 1.6e-07 60.5 109 32.1
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.6e-07 60.5 57 49.1
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 2.1e-07 60.1 66 45.5
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 2.1e-07 60.1 101 28.7
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.1e-07 60.1 77 42.9
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 2.8e-07 59.7 56 51.8
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 2.8e-07 59.7 109 32.1
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 2.8e-07 59.7 57 45.6
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 2.8e-07 59.7 70 41.4
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 3.6e-07 59.3 74 41.9
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.6e-07 59.3 75 42.7
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 3.6e-07 59.3 108 32.4
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 4.7e-07 58.9 56 50.0
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 4.7e-07 58.9 56 50.0
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 4.7e-07 58.9 57 47.4
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 4.7e-07 58.9 109 36.7
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 4.7e-07 58.9 116 30.2
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 8.0e-07 58.2 74 40.5
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.0e-06 57.8 112 32.1
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.0e-06 57.8 125 28.8
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.0e-06 57.8 55 52.7
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 1.0e-06 57.8 55 52.7
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 1.4e-06 57.4 59 47.5
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 1.4e-06 57.4 59 47.5
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 1.8e-06 57.0 53 47.2
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 1.8e-06 57.0 116 33.6
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 2.3e-06 56.6 57 40.4
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.3e-06 56.6 71 43.7
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 2.3e-06 56.6 57 42.1
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 3.0e-06 56.2 44 50.0
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 3.0e-06 56.2 111 31.5
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 6.8e-06 55.1 72 34.7
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 6.8e-06 55.1 55 47.3
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 6.8e-06 55.1 55 47.3
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 8.8e-06 54.7 71 39.4


User provided reference genes

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