Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 4.9e-37 157.5 94 100.0
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 2.1e-35 152.1 94 88.3
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.8e-34 149.1 94 95.7
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.1e-33 146.4 94 94.7
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.1e-33 146.4 94 94.7
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.5e-33 145.2 94 93.6
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 7.1e-28 127.1 92 77.2
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 5.1e-18 94.4 98 60.2
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 4.3e-17 91.3 95 67.4
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.6e-16 89.4 91 59.3
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 1.6e-16 89.4 91 59.3
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 5.3e-15 84.3 90 65.6
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 7.7e-14 80.5 88 53.4
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 1.3e-13 79.7 88 53.4
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.7e-13 79.3 83 54.2
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 2.2e-13 79.0 89 52.8
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 2.2e-13 79.0 89 62.9
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 2.9e-13 78.6 90 48.9
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 5.0e-13 77.8 88 54.5
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 5.0e-13 77.8 88 54.5
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 6.5e-13 77.4 89 50.6
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 8.5e-13 77.0 89 60.7
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 8.5e-13 77.0 93 53.8
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 1.4e-12 76.3 90 51.1
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 2.5e-12 75.5 88 51.1
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 3.2e-12 75.1 86 48.8
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 3.2e-12 75.1 91 52.7
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 3.2e-12 75.1 89 52.8
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 3.2e-12 75.1 89 56.2
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 4.2e-12 74.7 93 59.1
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 9.4e-12 73.6 90 51.1
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 9.4e-12 73.6 90 57.8
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 1.2e-11 73.2 91 50.5
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.2e-11 73.2 90 47.8
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.1e-11 72.4 90 47.8
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.7e-11 72.0 83 51.8
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 2.7e-11 72.0 89 50.6
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 2.7e-11 72.0 99 47.5
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 3.6e-11 71.6 89 48.3
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 3.6e-11 71.6 90 43.3
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.6e-11 71.6 91 54.9
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 4.6e-11 71.2 92 48.9
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 4.6e-11 71.2 90 54.4
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 6.1e-11 70.9 90 50.0
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 7.9e-11 70.5 85 47.1
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 7.9e-11 70.5 90 47.8
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 1.0e-10 70.1 99 46.5
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.4e-10 69.7 85 45.9
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 1.4e-10 69.7 98 55.1
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 1.4e-10 69.7 93 54.8
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.8e-10 69.3 90 45.6
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 1.8e-10 69.3 90 48.9
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 1.8e-10 69.3 88 48.9
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 2.3e-10 68.9 90 52.2
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 3.0e-10 68.6 49 73.5
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 3.0e-10 68.6 85 47.1
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 3.9e-10 68.2 89 53.9
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 5.1e-10 67.8 57 64.9
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 5.1e-10 67.8 90 53.3
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 5.1e-10 67.8 92 44.6
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 5.1e-10 67.8 90 48.9
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 6.7e-10 67.4 50 76.0
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 6.7e-10 67.4 50 72.0
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 8.8e-10 67.0 57 66.7
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 8.8e-10 67.0 85 55.3
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 8.8e-10 67.0 91 54.9
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 8.8e-10 67.0 57 59.6
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 1.5e-09 66.2 74 56.8
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 1.5e-09 66.2 63 65.1
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 1.5e-09 66.2 54 63.0
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 1.5e-09 66.2 54 63.0
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 2.0e-09 65.9 91 54.9
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 2.0e-09 65.9 50 74.0
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 2.0e-09 65.9 89 44.9
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 2.5e-09 65.5 79 53.2
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 2.5e-09 65.5 79 53.2
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 2.5e-09 65.5 79 53.2
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 2.5e-09 65.5 74 56.8
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 2.5e-09 65.5 50 74.0
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 2.5e-09 65.5 52 65.4
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 2.5e-09 65.5 52 65.4
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 3.3e-09 65.1 58 67.2
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 4.3e-09 64.7 67 64.2
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 4.3e-09 64.7 67 64.2
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 4.3e-09 64.7 67 64.2
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 5.7e-09 64.3 79 51.9
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 7.4e-09 63.9 50 70.0
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 7.4e-09 63.9 52 63.5
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 9.7e-09 63.5 107 51.4
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 9.7e-09 63.5 90 41.1
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 1.3e-08 63.2 57 59.6
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 1.7e-08 62.8 52 61.5
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 2.2e-08 62.4 104 52.9
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 2.8e-08 62.0 57 59.6
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 3.7e-08 61.6 90 52.2
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 3.7e-08 61.6 56 62.5
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 4.8e-08 61.2 104 52.9
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 4.8e-08 61.2 55 61.8
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 4.8e-08 61.2 39 74.4
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 6.3e-08 60.8 85 57.6
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 1.1e-07 60.1 50 68.0
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 1.1e-07 60.1 57 52.6
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 1.4e-07 59.7 92 42.4
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 1.8e-07 59.3 57 59.6
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.8e-07 59.3 91 44.0
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 2.4e-07 58.9 90 41.1
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 2.4e-07 58.9 39 69.2
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 2.4e-07 58.9 50 60.0
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.1e-07 58.5 57 52.6
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 5.3e-07 57.8 57 52.6
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 5.3e-07 57.8 57 52.6
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 9.1e-07 57.0 94 45.7
Oeu030957.1 Olea europaea HOM05D006325 ORTHO05D007878 9.1e-07 57.0 56 57.1
Oeu030955.1 Olea europaea HOM05D006325 ORTHO05D007878 2.0e-06 55.8 38 68.4
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 3.4e-06 55.1 91 41.8
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 5.9e-06 54.3 62 54.8
Sed0022207 Sechium edule HOM05D006325 ORTHO05D007878 7.7e-06 53.9 83 44.6


User provided reference genes

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