Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 6.3e-241 837.0 425 100.0
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.3e-230 802.0 425 96.2
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 8.0e-228 793.5 425 95.1
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 3.6e-220 768.1 426 91.8
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 9.2e-216 753.4 430 90.0
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.5e-202 709.5 430 83.3
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 3.4e-202 708.4 430 83.5
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 3.2e-200 701.8 425 85.2
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 1.2e-199 699.9 430 83.0
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 7.8e-191 670.6 425 80.0
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.7e-190 669.5 430 77.0
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 5.1e-190 667.9 429 77.9
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.9e-189 666.0 430 77.9
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 7.3e-189 664.1 428 78.3
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 2.1e-188 662.5 430 79.1
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 2.8e-188 662.1 430 79.1
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 1.4e-187 659.8 435 76.1
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.4e-187 659.1 449 73.7
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 1.5e-186 656.4 428 78.0
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 4.4e-186 654.8 423 77.8
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 9.9e-186 653.7 433 76.9
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 1.3e-185 653.3 423 77.1
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 1.4e-184 649.8 421 77.4
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 1.4e-184 649.8 426 75.4
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 2.4e-184 649.0 430 76.7
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 2.4e-184 649.0 424 75.9
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 2.4e-184 649.0 424 75.9
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 5.4e-184 647.9 428 75.2
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 9.3e-184 647.1 428 75.5
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 9.3e-184 647.1 428 75.0
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 1.6e-183 646.4 423 75.9
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 1.6e-183 646.4 424 76.7
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 1.6e-183 646.4 428 75.0
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 3.5e-183 645.2 417 77.2
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 4.6e-183 644.8 428 75.0
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 2.3e-182 642.5 424 75.7
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 3.0e-182 642.1 428 75.0
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 3.0e-182 642.1 426 75.6
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 3.9e-182 641.7 470 71.1
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 8.7e-182 640.6 425 75.1
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 1.1e-181 640.2 425 75.8
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 2.5e-181 639.0 422 74.4
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 2.5e-181 639.0 428 74.3
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 4.3e-181 638.3 418 75.1
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.3e-180 636.7 424 76.7
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 2.1e-180 636.0 430 75.1
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 2.8e-180 635.6 429 73.9
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 6.2e-180 634.4 424 73.8
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 1.4e-179 633.3 425 74.6
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 2.4e-179 632.5 425 74.6
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 2.4e-179 632.5 428 73.1
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 4.0e-179 631.7 416 75.0
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 9.0e-179 630.6 426 74.6
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 1.5e-178 629.8 422 74.4
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 2.0e-178 629.4 418 74.9
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 5.8e-178 627.9 423 74.5
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 7.6e-178 627.5 427 74.2
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 7.6e-178 627.5 426 73.2
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 9.9e-178 627.1 425 74.4
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 9.9e-178 627.1 427 72.4
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 1.3e-177 626.7 425 73.2
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 1.7e-177 626.3 422 73.7
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 2.9e-177 625.5 429 72.5
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 4.9e-177 624.8 422 73.5
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 8.4e-177 624.0 419 74.5
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 1.1e-176 623.6 421 74.1
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 1.4e-176 623.2 421 74.6
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 1.9e-176 622.9 423 72.6
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 1.9e-176 622.9 430 73.3
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 3.2e-176 622.1 430 72.1
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.4e-176 621.3 465 67.7
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 9.3e-176 620.5 420 74.3
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 1.2e-175 620.2 424 75.0
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 1.2e-175 620.2 424 75.0
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 6.0e-175 617.8 424 73.1
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 6.0e-175 617.8 424 73.1
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 6.0e-175 617.8 422 73.7
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 7.9e-175 617.5 426 73.2
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 3.0e-174 615.5 419 73.7
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 3.9e-174 615.1 416 73.6
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 3.9e-174 615.1 419 71.8
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 5.1e-174 614.8 427 73.1
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 5.1e-174 614.8 428 71.7
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 6.7e-174 614.4 426 73.5
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 1.5e-173 613.2 413 73.6
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 7.4e-173 610.9 419 73.0
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 9.6e-173 610.5 423 73.5
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 8.1e-172 607.4 434 71.4
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 8.1e-172 607.4 423 71.6
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 2.4e-171 605.9 445 70.8
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 5.3e-171 604.7 389 77.6
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 5.8e-170 601.3 423 71.4
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 7.6e-170 600.9 418 70.8
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 6.4e-169 597.8 429 70.2
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 6.4e-169 597.8 439 71.8
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.9e-168 596.3 423 71.9
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 2.4e-168 595.9 423 70.9
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 7.9e-167 590.9 404 72.0
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 9.6e-165 583.9 432 68.1
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 1.3e-164 583.6 416 70.4
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 2.8e-164 582.4 422 68.2
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 1.4e-163 580.1 509 60.3
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 9.0e-163 577.4 438 65.3
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 1.2e-162 577.0 422 68.5
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 1.3e-161 573.5 416 69.2
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 3.5e-159 565.5 409 69.9
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 3.0e-158 562.4 404 67.6
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 8.7e-158 560.8 370 76.2
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 6.3e-156 554.7 428 67.3
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.4e-155 553.5 434 68.4
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 4.2e-152 542.0 365 74.2
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 1.6e-151 540.0 410 64.4
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 2.7e-151 539.3 378 70.4
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.0e-150 537.3 417 68.1
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 2.5e-149 532.7 383 69.7
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 1.4e-144 516.9 404 65.8
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 2.6e-141 506.1 428 58.4
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 3.1e-139 499.2 431 58.9
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 9.1e-139 497.7 428 62.6
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 9.4e-136 487.6 332 73.8
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 6.7e-134 481.5 420 58.1
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 2.9e-129 466.1 408 56.9
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.6e-127 460.3 423 57.7
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 5.7e-117 425.2 386 61.4
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 3.5e-114 416.0 386 60.9
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 9.2e-107 391.3 252 76.6
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 2.9e-105 386.3 428 49.5
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 2.1e-103 380.2 277 72.9
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 7.5e-101 371.7 429 46.2
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 1.7e-97 360.5 269 69.5
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 5.6e-96 355.5 205 82.4
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 2.8e-95 353.2 250 71.2
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 2.6e-93 346.7 204 81.4
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 2.2e-92 343.6 454 44.9
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 3.5e-90 336.3 198 81.3
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 1.9e-88 330.5 424 45.3
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.1e-82 310.5 428 43.7
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 1.3e-76 291.2 454 39.6
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 9.0e-70 268.5 161 78.9
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 2.6e-69 266.9 382 43.5
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.4e-67 260.4 448 41.3
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 1.2e-66 258.1 206 68.0
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 2.3e-65 253.8 155 74.8
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.5e-61 241.1 449 37.0
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 2.2e-60 237.3 224 60.7
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 9.3e-59 231.9 192 63.5
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.5e-58 229.9 269 50.6
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.3e-57 227.3 347 42.7
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 4.2e-51 206.5 209 56.5
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.6e-48 196.1 119 79.0
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 2.6e-45 187.2 132 72.0
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 4.8e-31 139.8 170 47.1
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 1.2e-29 135.2 85 72.9
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 2.6e-29 134.0 291 33.0
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 1.2e-26 125.2 83 71.1
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 2.7e-26 124.0 83 71.1
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 1.3e-23 115.2 319 28.5
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.3e-23 115.2 103 54.4
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 2.6e-21 107.5 66 75.8
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 1.0e-20 105.5 57 80.7
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 2.2e-20 104.4 67 71.6
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 1.0e-12 79.0 58 62.1
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 1.3e-12 78.6 58 67.2
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 1.9e-11 74.7 46 71.7
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 2.5e-11 74.3 43 72.1
RcHm_v2.0_Chr4g0402621 Rosa chinensis HOM05D004141 ORTHO05D344211 7.2e-11 72.8 52 80.8
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 4.0e-09 67.0 240 27.5
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 9.7e-08 62.4 53 62.3
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 2.8e-07 60.8 53 62.3
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 8.3e-07 59.3 140 28.6
Oeu008350.1 Olea europaea HOM05D000783 ORTHO05D000705 1.8e-06 58.2 209 23.4
PSO063G6943 Papaver somniferum HOM05D000783 ORTHO05D000705 2.4e-06 57.8 154 27.9
PSO782G0060 Papaver somniferum HOM05D000783 ORTHO05D000705 2.4e-06 57.8 154 27.9
Oeu048326.1 Olea europaea HOM05D000783 ORTHO05D000705 7.0e-06 56.2 158 24.1
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 7.0e-06 56.2 207 29.5
THA.LOC104809282 Tarenaya hassleriana HOM05D003484 ORTHO05D004152 9.1e-06 55.8 137 28.5
TAR629G0198 Trochodendron aralioides HOM05D000783 ORTHO05D000705 9.1e-06 55.8 154 24.7


User provided reference genes

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