Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 1.9e-46 188.7 91 100.0
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 4.8e-45 184.1 89 98.9
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 5.4e-41 170.6 94 89.4
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 2.8e-29 131.7 70 85.7
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 5.8e-27 124.0 70 77.1
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 4.9e-26 120.9 70 75.7
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 6.5e-26 120.6 72 73.6
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 6.5e-26 120.6 70 75.7
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 1.1e-25 119.8 73 71.2
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 1.1e-25 119.8 70 74.3
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 2.5e-25 118.6 70 74.3
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 3.2e-25 118.2 71 74.6
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 4.2e-25 117.9 70 72.9
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 4.2e-25 117.9 70 72.9
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 4.2e-25 117.9 70 74.3
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 5.5e-25 117.5 70 74.3
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 5.5e-25 117.5 70 72.9
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 5.5e-25 117.5 70 72.9
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 5.5e-25 117.5 70 71.4
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 5.5e-25 117.5 70 72.9
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 5.5e-25 117.5 70 74.3
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 9.3e-25 116.7 72 70.8
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.2e-24 116.3 71 70.4
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 1.2e-24 116.3 72 69.4
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 2.1e-24 115.5 71 70.4
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 2.1e-24 115.5 70 68.6
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 3.5e-24 114.8 70 71.4
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 3.5e-24 114.8 72 66.7
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 3.5e-24 114.8 70 71.4
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 3.5e-24 114.8 70 71.4
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 4.6e-24 114.4 69 73.9
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 6.0e-24 114.0 70 70.0
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 6.0e-24 114.0 71 69.0
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 6.0e-24 114.0 72 66.7
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 7.9e-24 113.6 71 67.6
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 7.9e-24 113.6 70 68.6
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 1.0e-23 113.2 70 67.1
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 1.0e-23 113.2 70 68.6
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 1.0e-23 113.2 70 68.6
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 1.8e-23 112.5 70 71.4
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 2.3e-23 112.1 68 73.5
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 2.3e-23 112.1 70 68.6
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 3.0e-23 111.7 70 68.6
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 3.0e-23 111.7 71 67.6
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 3.0e-23 111.7 70 70.0
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 3.9e-23 111.3 70 68.6
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 3.9e-23 111.3 70 68.6
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 5.1e-23 110.9 70 68.6
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 6.7e-23 110.5 73 67.1
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 8.7e-23 110.2 71 66.2
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 8.7e-23 110.2 70 68.6
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 8.7e-23 110.2 70 68.6
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 1.1e-22 109.8 71 67.6
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 1.5e-22 109.4 70 67.1
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 1.5e-22 109.4 70 68.6
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 1.5e-22 109.4 70 68.6
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 2.5e-22 108.6 68 70.6
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 4.3e-22 107.8 70 65.7
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 4.3e-22 107.8 70 67.1
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 5.7e-22 107.5 70 64.3
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 5.7e-22 107.5 72 68.1
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 7.4e-22 107.1 72 66.7
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 7.4e-22 107.1 72 68.1
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 9.7e-22 106.7 70 64.3
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 1.3e-21 106.3 78 61.5
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 1.3e-21 106.3 70 62.9
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 2.8e-21 105.1 68 67.6
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 2.8e-21 105.1 70 64.3
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 3.7e-21 104.8 70 61.4
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.7e-21 104.8 68 67.6
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.7e-21 104.8 68 67.6
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 3.7e-21 104.8 68 67.6
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 4.8e-21 104.4 72 65.3
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 8.2e-21 103.6 71 66.2
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 8.2e-21 103.6 65 64.6
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 1.1e-20 103.2 71 64.8
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 1.1e-20 103.2 70 65.7
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 1.1e-20 103.2 70 62.9
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 1.4e-20 102.8 70 62.9
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 1.8e-20 102.4 68 66.2
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 1.8e-20 102.4 70 61.4
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 4.1e-20 101.3 71 62.0
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 5.3e-20 100.9 68 66.2
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 5.3e-20 100.9 68 66.2
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 5.3e-20 100.9 71 63.4
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 6.9e-20 100.5 70 62.9
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 6.9e-20 100.5 70 62.9
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.6e-19 98.6 66 66.7
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 4.5e-19 97.8 71 59.2
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 7.6e-19 97.1 70 64.3
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.9e-18 95.1 68 63.2
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 3.8e-18 94.7 65 63.1
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 3.8e-18 94.7 70 60.0
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 5.0e-18 94.4 70 57.1
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.2e-17 91.7 68 61.8
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 4.2e-17 91.3 72 59.7
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 9.3e-17 90.1 72 58.3
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 9.3e-17 90.1 72 58.3
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 1.6e-16 89.4 68 57.4
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 2.1e-16 89.0 73 57.5
Thhalv10026551m.g Eutrema salsugineum HOM05D006227 ORTHO05D007714 4.6e-16 87.8 72 58.3
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 6.1e-16 87.4 72 56.9
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 1.4e-15 86.3 72 55.6
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 1.8e-15 85.9 72 55.6
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 2.3e-15 85.5 70 52.9
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 5.1e-15 84.3 72 55.6
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 5.1e-15 84.3 72 52.8
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 8.8e-15 83.6 72 54.2
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 8.8e-15 83.6 72 52.8
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 8.8e-15 83.6 72 54.2
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 1.5e-14 82.8 72 54.2
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 1.9e-14 82.4 72 51.4
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 1.9e-14 82.4 72 54.2
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 1.9e-14 82.4 72 54.2
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 4.3e-14 81.3 72 51.4
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 2.4e-12 75.5 68 44.1
Lsat_1_v5_gn_2_96480 Lactuca sativa HOM05D006227 ORTHO05D007714 6.9e-12 73.9 52 63.5
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 1.5e-11 72.8 40 77.5
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 5.9e-11 70.9 43 76.7
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 1.1e-09 66.6 40 70.0
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 4.2e-09 64.7 40 67.5
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 9.4e-09 63.5 70 42.9
BolC1t02011H Brassica oleracea HOM05D006227 ORTHO05D007714 1.8e-07 59.3 72 41.7
RcHm_v2.0_Chr4g0411551 Rosa chinensis HOM05D000001 ORTHO05D000003 2.3e-07 58.9 60 53.3
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 8.8e-07 57.0 37 64.9
MCO03G239 Micromonas commoda HOM05D006227 ORTHO05D007714 9.7e-06 53.5 91 29.7


User provided reference genes

Program Settings