Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.4e-259 899.0 448 100.0
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 6.2e-255 883.6 456 97.6
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 3.9e-209 731.5 454 81.9
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 2.7e-202 708.8 453 80.1
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 4.8e-199 698.0 453 78.6
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 9.7e-192 673.7 454 74.0
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 7.2e-179 630.9 466 72.1
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 2.8e-178 629.0 403 77.2
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 4.7e-178 628.2 461 72.2
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 4.7e-178 628.2 401 77.3
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 8.0e-178 627.5 407 76.7
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.5e-176 623.2 424 73.1
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 2.6e-176 622.5 471 69.0
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 7.5e-176 620.9 455 68.8
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 9.8e-176 620.5 465 68.2
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.7e-175 619.8 462 71.0
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.4e-174 616.7 458 69.4
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 7.0e-174 614.4 462 71.0
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.2e-173 613.6 464 68.1
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.5e-173 612.1 476 67.0
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.5e-173 612.1 472 67.2
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 3.8e-172 608.6 463 67.8
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.8e-170 602.4 464 67.2
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 2.3e-169 599.4 476 66.6
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.5e-168 596.7 429 69.9
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 2.6e-168 595.9 464 66.6
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 4.4e-168 595.1 465 67.7
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 7.5e-168 594.3 454 67.6
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 6.4e-167 591.3 386 73.3
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 8.3e-167 590.9 459 67.3
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 9.2e-166 587.4 431 69.1
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 1.2e-165 587.0 430 68.8
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 6.0e-165 584.7 453 66.2
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 1.0e-164 583.9 458 67.0
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 2.3e-164 582.8 438 68.0
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 3.9e-164 582.0 384 75.0
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 1.1e-163 580.5 453 65.8
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 1.9e-163 579.7 388 72.4
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 2.5e-163 579.3 483 67.3
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 5.6e-163 578.2 453 65.3
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 7.3e-163 577.8 433 68.4
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.2e-162 577.0 455 67.5
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.6e-162 576.6 452 65.3
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 1.6e-162 576.6 433 68.4
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 4.7e-162 575.1 385 72.7
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 1.1e-161 573.9 420 68.8
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 1.1e-161 573.9 432 68.3
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 1.1e-161 573.9 460 63.5
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 1.8e-161 573.2 459 63.8
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 5.2e-161 571.6 460 63.9
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 3.4e-160 568.9 449 65.5
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 3.4e-160 568.9 475 63.4
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 4.4e-160 568.5 460 63.9
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 5.8e-160 568.2 419 69.5
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 1.7e-159 566.6 473 62.8
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 3.2e-158 562.4 386 71.0
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 1.2e-157 560.5 459 62.7
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 3.5e-157 558.9 428 66.6
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 3.5e-157 558.9 432 66.7
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 3.9e-156 555.4 431 66.4
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 5.1e-156 555.1 402 67.9
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 1.1e-155 553.9 494 61.9
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 1.1e-155 553.9 431 65.7
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.5e-155 553.5 433 65.8
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 1.5e-155 553.5 461 62.3
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 3.3e-155 552.4 416 68.3
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 9.5e-155 550.8 385 70.6
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 1.6e-154 550.1 334 79.6
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.6e-154 550.1 471 63.3
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 2.8e-154 549.3 431 66.4
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 4.7e-154 548.5 457 62.6
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 6.2e-154 548.1 445 64.5
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 5.2e-153 545.0 434 65.7
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 1.5e-152 543.5 381 70.1
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 4.4e-152 542.0 384 70.3
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 5.8e-152 541.6 396 68.2
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 5.8e-152 541.6 286 95.5
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 2.9e-151 539.3 491 60.1
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 4.9e-151 538.5 456 64.7
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 6.4e-151 538.1 414 66.7
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 1.1e-150 537.3 467 59.5
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.9e-150 536.6 433 64.4
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 7.1e-150 534.6 465 60.6
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 4.6e-149 531.9 465 59.8
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.8e-145 520.0 380 67.4
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 4.0e-145 518.8 409 65.8
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 3.4e-144 515.8 369 67.8
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 2.2e-143 513.1 334 74.9
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 4.9e-143 511.9 512 54.9
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 1.1e-142 510.8 441 61.5
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 8.7e-140 501.1 486 56.4
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 2.6e-136 489.6 427 61.6
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.4e-134 483.8 316 75.6
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 9.3e-134 481.1 432 61.1
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 5.6e-131 471.9 397 63.2
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 5.6e-131 471.9 456 57.7
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 5.6e-131 471.9 427 57.8
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.1e-129 466.1 236 99.6
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.6e-125 453.8 422 58.8
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 3.3e-123 446.0 422 57.8
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.6e-122 443.7 236 95.8
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 8.1e-122 441.4 282 75.9
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 1.7e-119 433.7 417 57.8
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 6.4e-119 431.8 447 54.4
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 1.1e-118 431.0 236 92.4
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 2.1e-117 426.8 455 53.0
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 2.1e-114 416.8 414 57.5
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 1.7e-111 407.1 359 56.5
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 3.0e-108 396.4 339 63.1
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 4.3e-99 365.9 286 66.8
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 3.7e-98 362.8 181 98.9
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 1.0e-95 354.8 312 61.5
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 8.8e-92 341.7 209 79.9
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 1.8e-89 334.0 209 76.1
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 2.3e-84 317.0 416 42.1
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 3.9e-84 316.2 368 47.3
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 8.0e-77 292.0 404 41.8
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 2.3e-76 290.4 171 81.9
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 1.2e-67 261.5 280 48.2
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 1.2e-67 261.5 236 59.3
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 1.5e-62 244.6 240 54.2
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 6.6e-55 219.2 168 63.7
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.8e-52 211.1 232 53.4
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 4.0e-52 209.9 293 42.7
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 3.4e-43 180.3 230 47.8
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 3.9e-39 166.8 92 83.7
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 5.8e-35 152.9 89 77.5
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 3.0e-31 140.6 123 61.8
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.1e-30 138.7 218 41.7
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 4.0e-28 130.2 73 83.6
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 1.2e-27 128.6 361 31.9
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 2.1e-24 117.9 128 48.4
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 8.1e-21 105.9 67 76.1
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 2.4e-20 104.4 130 44.6
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.6e-16 91.7 57 73.7
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 1.3e-13 82.0 72 62.5
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 4.8e-13 80.1 64 67.2
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 1.4e-12 78.6 352 21.9
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 1.3e-07 62.0 50 62.0
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 3.9e-07 60.5 37 70.3
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 1.9e-06 58.2 71 42.3
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 1.9e-06 58.2 77 40.3


User provided reference genes

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