Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.7e-126 455.3 222 100.0
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.3e-125 453.0 222 99.5
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.8e-114 416.0 209 97.1
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 9.7e-100 367.1 207 86.5
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 7.0e-82 307.8 220 74.1
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 2.6e-81 305.8 207 74.9
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 5.5e-79 298.1 212 72.6
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 1.2e-78 297.0 206 73.3
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.7e-75 286.6 174 81.0
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 2.5e-71 272.7 209 67.5
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 1.2e-70 270.4 222 66.2
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 8.0e-70 267.7 212 64.6
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.4e-69 266.9 212 64.6
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 3.0e-69 265.8 206 67.0
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 6.8e-69 264.6 188 70.7
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 8.8e-69 264.2 193 68.4
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 3.4e-68 262.3 194 68.6
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 5.7e-68 261.5 207 63.3
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 5.7e-68 261.5 179 72.1
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 5.7e-68 261.5 213 66.2
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 9.8e-68 260.8 216 63.0
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 9.8e-68 260.8 168 72.6
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 1.3e-67 260.4 214 64.5
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 4.8e-67 258.5 214 63.1
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 6.3e-67 258.1 173 71.7
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 6.3e-67 258.1 166 74.1
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 6.3e-67 258.1 212 64.6
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 6.3e-67 258.1 212 64.6
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 6.3e-67 258.1 146 80.1
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 6.3e-67 258.1 173 70.5
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 1.1e-66 257.3 191 69.1
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.1e-66 257.3 173 69.9
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 1.1e-66 257.3 178 71.3
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.8e-66 256.5 173 69.9
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 2.4e-66 256.1 179 71.5
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 2.4e-66 256.1 196 68.4
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 4.1e-66 255.4 181 68.0
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 7.0e-66 254.6 165 74.5
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 7.0e-66 254.6 172 72.7
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 9.1e-66 254.2 173 70.5
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 1.2e-65 253.8 168 70.2
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 2.0e-65 253.1 182 69.8
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 2.7e-65 252.7 215 62.3
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 3.5e-65 252.3 146 80.1
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 5.9e-65 251.5 191 67.5
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 7.7e-65 251.1 217 61.3
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.0e-64 250.8 160 74.4
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 1.3e-64 250.4 208 61.5
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 1.3e-64 250.4 173 69.9
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 1.7e-64 250.0 149 78.5
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.9e-64 249.2 169 73.4
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 3.8e-64 248.8 204 63.7
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 3.8e-64 248.8 208 61.5
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 3.8e-64 248.8 181 67.4
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 6.5e-64 248.1 149 77.9
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 6.5e-64 248.1 171 70.2
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 6.5e-64 248.1 161 70.2
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 1.9e-63 246.5 204 63.2
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 2.5e-63 246.1 168 69.6
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 3.2e-63 245.7 169 69.8
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 4.2e-63 245.4 145 79.3
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 9.5e-63 244.2 163 72.4
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 3.6e-62 242.3 147 72.8
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 4.7e-62 241.9 200 62.0
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 2.3e-61 239.6 147 72.1
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.0e-61 239.2 149 73.2
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 6.8e-61 238.0 187 66.3
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 6.8e-61 238.0 213 58.7
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 8.8e-61 237.7 147 72.1
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.2e-60 237.3 169 66.9
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 2.6e-60 236.1 147 70.7
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 3.4e-60 235.7 152 69.1
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 3.4e-60 235.7 152 69.1
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 4.4e-60 235.3 190 61.1
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 5.7e-60 235.0 220 54.5
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 5.7e-60 235.0 152 68.4
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 5.7e-60 235.0 152 68.4
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 5.7e-60 235.0 234 55.1
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 1.3e-59 233.8 147 70.7
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 1.3e-59 233.8 145 71.0
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 8.3e-59 231.1 144 74.3
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 8.3e-59 231.1 197 60.4
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 8.3e-59 231.1 187 59.9
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 1.8e-58 229.9 193 60.6
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 5.4e-58 228.4 169 65.7
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 5.6e-55 218.4 209 56.9
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 5.6e-55 218.4 125 80.0
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 4.7e-54 215.3 199 58.3
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 6.1e-54 214.9 124 79.0
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.0e-53 214.2 146 70.5
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 5.2e-53 211.8 124 79.0
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 1.2e-52 210.7 124 75.0
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 7.5e-52 208.0 167 64.1
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 1.3e-51 207.2 143 66.4
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.7e-51 206.8 210 56.2
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.7e-51 206.8 210 56.2
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 8.3e-51 204.5 193 56.5
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 2.4e-50 203.0 124 79.8
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.4e-50 203.0 124 79.8
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 2.4e-50 203.0 153 58.8
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 4.1e-50 202.2 145 69.0
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 3.5e-49 199.1 124 72.6
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.1e-47 194.1 149 57.0
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 2.5e-47 193.0 146 65.8
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 6.2e-46 188.3 165 57.6
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 5.2e-45 185.3 144 59.0
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 1.7e-43 180.3 153 58.2
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 3.7e-43 179.1 153 56.9
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 8.3e-43 177.9 133 61.7
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 1.9e-42 176.8 113 75.2
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 4.1e-42 175.6 152 54.6
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.5e-41 172.6 101 78.2
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 6.0e-41 171.8 118 67.8
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 1.0e-40 171.0 151 55.0
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 1.3e-40 170.6 147 57.1
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.3e-40 169.9 112 69.6
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 6.6e-40 168.3 99 77.8
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 1.9e-39 166.8 111 72.1
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 7.3e-39 164.9 108 67.6
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 1.1e-37 161.0 102 73.5
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 3.2e-34 149.4 115 63.5
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 2.7e-33 146.4 144 52.8
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 6.0e-33 145.2 110 58.2
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.7e-30 135.6 103 66.0
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 1.2e-28 131.0 75 81.3
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 6.4e-27 125.2 162 40.1
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 5.4e-26 122.1 125 55.2
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 1.6e-25 120.6 125 54.4
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 3.5e-25 119.4 125 54.4
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 4.6e-25 119.0 117 52.1
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 3.9e-24 115.9 77 68.8
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 1.2e-22 110.9 85 68.2
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 8.1e-22 108.2 68 73.5
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.2e-19 100.1 90 51.1
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.2e-17 94.4 63 68.3
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 6.0e-17 92.0 56 76.8
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 1.0e-16 91.3 74 63.5
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 8.7e-16 88.2 65 60.0
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 8.7e-16 88.2 61 67.2
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 7.3e-15 85.1 80 48.8
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 5.3e-13 79.0 58 62.1
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 5.3e-13 79.0 102 45.1
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 4.6e-09 65.9 96 40.6
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 7.4e-07 58.5 31 77.4


User provided reference genes

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