Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2622 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.7e-82 309.3 161 100.0
FvH4_3g28750 Fragaria vesca HOM05D007890 ORTHO05D009945 1.5e-81 306.2 159 100.0
FAN16G0819 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.3e-74 283.1 162 94.4
FAN21G3432 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.2e-72 276.6 162 92.6
RcHm_v2.0_Chr5g0052301 Rosa chinensis HOM05D007890 ORTHO05D009945 1.7e-53 213.0 173 73.4
MD03G1174000 Malus domestica HOM05D007890 ORTHO05D009945 1.9e-28 129.8 169 51.5
MD11G1192200 Malus domestica HOM05D007890 ORTHO05D009945 1.6e-27 126.7 168 51.8
Prupe.4G250100 Prunus persica HOM05D007890 ORTHO05D009945 9.1e-23 110.9 178 47.8
Actinidia06910 Actinidia chinensis HOM05D007890 ORTHO05D009945 8.8e-18 94.4 113 49.6
Dinv36254 Davidia involucrata HOM05D007890 ORTHO05D009945 1.5e-17 93.6 106 52.8
GSVIVG01025250001 Vitis vinifera HOM05D007890 ORTHO05D009945 2.0e-17 93.2 144 45.1
Duzib170G0138 Durio zibethinus HOM05D007890 ORTHO05D009945 3.3e-17 92.4 112 52.7
Manes.13G093240 Manihot esculenta HOM05D007890 ORTHO05D009945 9.7e-17 90.9 160 42.5
Atru.chr3.2706 Acer truncatum HOM05D007890 ORTHO05D009945 1.7e-16 90.1 164 41.5
Rhsim13G0220700 Rhododendron simsii HOM05D007890 ORTHO05D009945 3.7e-16 89.0 112 50.9
vmacro04152 Vaccinium macrocarpon HOM05D007890 ORTHO05D009945 6.3e-16 88.2 106 51.9
Hma1.2p1_0606F.1_g188050 Hydrangea macrophylla HOM05D007890 ORTHO05D009945 8.2e-16 87.8 152 42.1
QL01p004625 Quercus lobata HOM05D007890 ORTHO05D009945 1.1e-15 87.4 157 42.0
TWI32G0791 Tripterygium wilfordii HOM05D007890 ORTHO05D009945 1.1e-15 87.4 150 44.0
MELO3C014589.2 Cucumis melo HOM05D007890 ORTHO05D009945 1.4e-15 87.0 105 48.6
MSTRG.17595 Avicennia marina HOM05D007890 ORTHO05D009945 4.1e-15 85.5 122 45.9
Eucgr.B03690 Eucalyptus grandis HOM05D007890 ORTHO05D009945 6.9e-15 84.7 123 47.2
Potri.001G257400 Populus trichocarpa HOM05D007890 ORTHO05D009945 9.1e-15 84.3 166 38.6
TAR633G1231 Trochodendron aralioides HOM05D007890 ORTHO05D009945 1.2e-14 84.0 162 37.7
Ciclev10016956m.g Citrus clementina HOM05D007890 ORTHO05D009945 1.5e-14 83.6 117 47.0
Cfa009778 Carpinus fangiana HOM05D007890 ORTHO05D009945 2.0e-14 83.2 115 50.4
CsaV3_6G039340 Cucumis sativus L. HOM05D007890 ORTHO05D009945 3.4e-14 82.4 92 52.2
Lalb_Chr15g0082521 Lupinus albus HOM05D007890 ORTHO05D009945 4.5e-14 82.0 151 40.4
Gohir.D05G072500 Gossypium hirsutum HOM05D007890 ORTHO05D009945 7.7e-14 81.3 103 51.5
Gorai.009G073500 Gossypium raimondii HOM05D007890 ORTHO05D009945 7.7e-14 81.3 103 51.5
Glyma.08G336100 Glycine max HOM05D007890 ORTHO05D009945 1.0e-13 80.9 103 47.6
Lj1P329T66 Lonicera japonica HOM05D007890 ORTHO05D009945 1.0e-13 80.9 120 47.5
Oeu025872.1 Olea europaea HOM05D007890 ORTHO05D009945 1.3e-13 80.5 111 48.6
Aqoxy2G00189 Aquilegia oxysepala HOM05D007890 ORTHO05D009945 2.2e-13 79.7 94 48.9
ClCG02G023170 Citrullus lanatus HOM05D007890 ORTHO05D009945 2.2e-13 79.7 105 47.6
Gohir.A05G069600 Gossypium hirsutum HOM05D007890 ORTHO05D009945 2.2e-13 79.7 103 50.5
Peaxi162Scf00004g02526 Petunia axillaris HOM05D007890 ORTHO05D009945 2.2e-13 79.7 121 42.1
SalBow5G2971 Salvia bowleyana HOM05D007890 ORTHO05D009945 6.5e-13 78.2 107 43.0
Ah.06g194130 Amaranthus hybridus HOM05D007890 ORTHO05D009945 8.5e-13 77.8 102 49.0
EL10Ac4g10243 Beta vulgaris HOM05D007890 ORTHO05D009945 8.5e-13 77.8 97 45.4
Sabra16G0157400 Salix brachista HOM05D007890 ORTHO05D009945 8.5e-13 77.8 192 35.4
Thecc.09G234600 Theobroma cacao HOM05D007890 ORTHO05D009945 8.5e-13 77.8 92 52.2
PGSC0003DMG400033336 Solanum tuberosum HOM05D007890 ORTHO05D009945 1.1e-12 77.4 111 44.1
Sopen11g025420 Solanum pennellii HOM05D007890 ORTHO05D009945 2.5e-12 76.3 143 39.9
BcaC06g31267 Brassica carinata HOM05D007890 ORTHO05D009945 3.2e-12 75.9 117 41.9
CiPaw.13G159700 Carya illinoinensis HOM05D007890 ORTHO05D009945 3.2e-12 75.9 98 51.0
Phvul.006G062000 Phaseolus vulgaris HOM05D007890 ORTHO05D009945 3.2e-12 75.9 132 40.9
Solyc11g065680.1 Solanum lycopersicum HOM05D007890 ORTHO05D009945 5.5e-12 75.1 95 48.4
Migut.N02322 Erythranthe guttata HOM05D007890 ORTHO05D009945 9.4e-12 74.3 108 45.4
VMungo0540G1907 Vigna mungo HOM05D007890 ORTHO05D009945 1.2e-11 73.9 134 39.6
Psat5g163960 Pisum sativum HOM05D007890 ORTHO05D009945 1.6e-11 73.6 129 39.5
Nitab4.5_0002741g0090 Nicotiana tabacum HOM05D007890 ORTHO05D009945 2.7e-11 72.8 108 44.4
arahy.Tifrunner.gnm1.ann1.I2HDTW Arachis hypogaea HOM05D007890 ORTHO05D009945 3.6e-11 72.4 125 40.8
Lj6g0024098 Lotus japonicus HOM05D007890 ORTHO05D009945 3.6e-11 72.4 151 36.4
A06p43960 Brassica napus HOM05D001297 ORTHO05D001135 4.7e-11 72.0 129 37.2
BraA06t27271Z Brassica rapa HOM05D001297 ORTHO05D001135 4.7e-11 72.0 129 37.2
BcaC06g34102 Brassica carinata HOM05D007890 ORTHO05D009945 6.1e-11 71.6 123 39.8
C07p32670 Brassica napus HOM05D001297 ORTHO05D001135 6.1e-11 71.6 123 39.8
BolC7t43788H Brassica oleracea HOM05D001297 ORTHO05D001135 8.0e-11 71.2 124 39.5
Carub.0005s0083 Capsella rubella HOM05D007890 ORTHO05D009945 1.0e-10 70.9 115 41.7
HanXRQChr08g0209341 Helianthus annuus HOM05D007890 ORTHO05D009945 1.0e-10 70.9 90 46.7
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 3.0e-10 69.3 116 44.8
AL5G10980 Arabidopsis lyrata HOM05D007890 ORTHO05D009945 3.9e-10 68.9 117 38.5
arahy.Tifrunner.gnm1.ann1.SWS7SX Arachis hypogaea HOM05D007890 ORTHO05D009945 3.9e-10 68.9 125 39.2
Sed0013757 Sechium edule HOM05D007890 ORTHO05D009945 8.8e-10 67.8 100 41.0
Lsat_1_v5_gn_2_29200 Lactuca sativa HOM05D007890 ORTHO05D009945 1.5e-09 67.0 139 40.3
CDE05G2272 Ceratophyllum demersum HOM05D007890 ORTHO05D009945 2.6e-09 66.2 111 41.4
Sp2g13290 Schrenkiella parvula HOM05D007890 ORTHO05D009945 4.4e-09 65.5 118 39.0
AT2G01870 Arabidopsis thaliana HOM05D007890 ORTHO05D009945 5.7e-09 65.1 116 39.7
Thhalv10005015m.g Eutrema salsugineum HOM05D007890 ORTHO05D009945 7.4e-09 64.7 99 41.4
Medtr3g061480 Medicago truncatula HOM05D007890 ORTHO05D009945 7.4e-09 64.7 154 35.1
PSO724G0038 Papaver somniferum HOM05D007890 ORTHO05D009945 7.4e-09 64.7 106 40.6
CARHR144430 Cardamine hirsuta HOM05D007890 ORTHO05D009945 9.7e-09 64.3 108 39.8
THA.LOC104801952 Tarenaya hassleriana HOM05D007890 ORTHO05D009945 1.7e-08 63.5 99 45.5
unitig_22.g5692 Utricularia gibba HOM05D007890 ORTHO05D009945 6.3e-08 61.6 89 43.8
ECA233G3563 Erigeron canadensis HOM05D000013 ORTHO05D004590 2.4e-07 59.7 91 41.8
PSO423G0105 Papaver somniferum HOM05D007890 ORTHO05D009945 7.0e-07 58.2 106 35.8
MBI02_g09445_MAGBIO Magnolia biondii HOM05D007890 ORTHO05D009945 7.7e-06 54.7 149 35.6


User provided reference genes

Program Settings