Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.1e-285 984.9 486 100.0
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.5e-273 943.7 512 92.2
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 7.9e-272 939.9 510 92.5
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.8e-268 928.7 492 94.7
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.1e-263 910.6 492 93.1
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.2e-240 836.3 495 85.7
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 3.6e-216 755.0 499 76.4
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.1e-209 733.4 499 74.3
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.2e-206 723.4 498 73.7
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 2.1e-203 712.6 500 72.8
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 2.9e-197 692.2 498 70.7
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 6.4e-197 691.0 496 70.8
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.6e-195 686.4 498 70.5
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 1.3e-194 683.3 499 71.5
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 2.3e-194 682.6 499 71.5
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 2.3e-194 682.6 499 70.5
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.9e-194 681.8 498 70.1
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 3.9e-194 681.8 500 69.2
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.1e-193 680.2 498 69.9
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 3.3e-193 678.7 498 69.7
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 9.6e-193 677.2 496 67.7
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 2.1e-192 676.0 496 69.8
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 4.7e-192 674.9 502 69.5
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 1.8e-191 672.9 502 69.7
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 4.0e-191 671.8 504 68.7
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 5.2e-191 671.4 498 69.5
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 6.9e-191 671.0 499 68.9
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 1.2e-190 670.2 500 70.4
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.0e-190 669.5 499 68.1
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 4.4e-190 668.3 497 67.4
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 5.8e-190 667.9 501 68.5
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 9.9e-190 667.2 498 69.1
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.7e-189 666.4 498 69.1
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 2.2e-189 666.0 496 69.4
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 4.9e-189 664.8 507 66.1
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.1e-188 663.7 502 67.3
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.4e-188 662.5 503 68.6
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 2.7e-187 659.1 499 66.7
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 4.6e-187 658.3 513 67.4
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 7.8e-187 657.5 501 68.3
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 2.3e-186 656.0 506 67.8
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.1e-185 653.7 501 66.5
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 5.6e-185 651.4 494 67.2
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 2.8e-184 649.0 497 66.6
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.1e-183 647.1 496 66.1
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 4.0e-183 645.2 500 65.4
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 5.3e-183 644.8 503 66.8
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 6.9e-183 644.4 529 62.9
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 2.6e-182 642.5 506 68.0
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.3e-181 640.2 503 66.2
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 3.8e-181 638.6 503 65.6
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 8.4e-181 637.5 570 59.1
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.9e-180 636.3 501 64.9
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 3.9e-178 628.6 500 63.8
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 3.9e-178 628.6 504 64.3
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.5e-177 626.7 498 64.1
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.3e-176 623.6 503 64.4
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.3e-176 623.6 522 61.9
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.3e-176 623.6 497 63.4
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 2.1e-176 622.9 504 63.9
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 3.1e-175 619.0 427 75.4
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 4.0e-175 618.6 502 64.3
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 6.9e-175 617.8 502 63.7
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 6.9e-175 617.8 494 63.8
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.5e-174 616.7 541 59.7
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 2.6e-174 615.9 503 63.2
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 5.8e-174 614.8 534 59.4
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 9.9e-174 614.0 539 59.9
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 9.9e-174 614.0 539 60.1
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.3e-173 613.6 503 64.6
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.3e-173 613.6 539 59.9
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.7e-173 613.2 503 64.8
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 2.9e-173 612.5 497 63.0
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 2.7e-171 605.9 508 63.4
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.5e-171 605.5 556 57.9
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 3.5e-171 605.5 493 62.3
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 4.6e-171 605.1 497 63.2
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 6.0e-171 604.7 493 62.7
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-170 603.6 462 68.4
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 5.1e-170 601.7 502 62.4
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 4.3e-169 598.6 456 66.7
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.3e-168 597.0 509 63.9
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.6e-168 596.7 504 62.9
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.8e-168 595.1 498 62.4
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 8.1e-168 594.3 459 67.1
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.1e-167 594.0 493 62.9
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.8e-167 593.2 539 59.0
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 2.4e-167 592.8 517 61.1
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 3.4e-166 589.0 507 61.1
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 1.6e-163 580.1 493 60.4
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 6.0e-163 578.2 495 61.0
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 1.8e-162 576.6 496 61.1
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.8e-162 576.6 514 61.3
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 2.3e-162 576.2 505 60.6
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 5.1e-162 575.1 494 60.5
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 8.7e-162 574.3 503 60.8
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 8.7e-162 574.3 499 60.1
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.9e-161 573.2 497 60.8
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.9e-161 573.2 496 60.7
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.9e-161 573.2 496 60.7
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 3.3e-161 572.4 499 59.7
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 3.3e-161 572.4 499 59.7
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 7.4e-161 571.2 496 60.1
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 7.4e-161 571.2 496 60.1
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 8.2e-160 567.8 491 60.7
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.1e-159 567.4 493 59.2
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.8e-159 566.6 497 60.8
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 3.4e-158 562.4 498 59.4
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 4.5e-158 562.0 497 60.4
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.0e-157 560.8 495 59.0
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 2.5e-156 556.2 459 63.4
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 1.1e-153 547.4 409 68.5
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.7e-149 533.5 410 67.8
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.9e-148 530.0 412 66.7
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 1.4e-146 523.9 451 63.0
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 5.7e-145 518.5 408 65.9
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 6.5e-141 505.0 513 51.7
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 8.5e-141 504.6 288 83.3
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 3.2e-140 502.7 502 52.2
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 8.8e-138 494.6 454 58.8
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 2.0e-137 493.4 458 59.4
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 5.7e-137 491.9 415 61.2
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 8.2e-136 488.0 282 81.6
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.8e-133 479.2 480 54.0
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.5e-132 476.5 423 62.2
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 8.0e-131 471.5 528 48.9
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.4e-130 470.7 364 68.4
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 5.2e-130 468.8 419 57.3
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 7.7e-126 454.9 481 51.4
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.7e-125 453.8 287 74.2
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.2e-121 441.0 341 62.8
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 8.6e-117 424.9 503 48.5
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 7.2e-116 421.8 285 68.1
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 2.5e-108 396.7 286 64.7
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 2.6e-105 386.7 540 43.0
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 7.5e-105 385.2 414 49.5
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.2e-102 377.9 572 42.0
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 3.7e-96 356.3 296 58.1
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.1e-95 352.8 318 57.2
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.1e-92 344.7 403 44.4
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.5e-92 344.4 561 39.8
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 8.9e-82 308.5 317 56.5
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 6.6e-77 292.4 393 46.3
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 1.1e-66 258.5 199 64.8
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.8e-61 241.1 445 39.6
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 5.1e-61 239.6 192 67.7
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.5e-47 193.0 171 59.6
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 1.5e-44 184.9 218 53.2
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 3.8e-40 170.2 139 65.5
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.5e-40 169.5 151 63.6
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 5.5e-39 166.4 138 61.6
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 5.5e-39 166.4 138 61.6
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 6.1e-38 162.9 193 51.8
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.8e-35 154.1 87 81.6
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.3e-35 152.9 84 83.3
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.5e-33 148.3 84 81.0
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 3.4e-33 147.1 86 76.7
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 3.4e-33 147.1 86 76.7
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 3.8e-32 143.7 114 65.8
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.0e-32 143.3 127 50.4
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 6.5e-32 142.9 174 46.6
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.0e-25 121.3 157 49.0
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.8e-24 117.1 120 55.8
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 2.1e-22 111.3 172 37.8
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.2e-12 79.0 70 61.4
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 3.7e-11 73.9 42 78.6


User provided reference genes

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