Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-144 516.5 274 100.0
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 4.7e-96 355.1 279 72.4
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.7e-94 348.2 279 71.0
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.8e-88 329.3 279 68.8
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 3.2e-84 315.8 280 63.9
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.4e-71 273.9 138 97.8
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 2.2e-61 240.0 281 53.0
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 8.6e-58 228.0 283 50.9
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.9e-57 226.9 276 47.1
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 7.3e-57 224.9 271 53.5
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 2.1e-56 223.4 278 49.3
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.8e-56 223.0 267 49.1
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 8.1e-56 221.5 284 49.3
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 9.0e-55 218.0 277 47.3
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 2.0e-54 216.9 279 47.0
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 3.4e-54 216.1 279 47.3
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 5.8e-54 215.3 277 48.4
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.6e-54 214.9 264 48.9
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 1.7e-53 213.8 280 47.5
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.7e-53 213.8 269 47.6
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.7e-53 213.8 267 48.3
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 3.8e-53 212.6 278 47.1
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.8e-53 212.6 272 47.1
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 4.9e-53 212.2 270 44.1
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 6.4e-53 211.8 270 44.1
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 8.4e-53 211.5 270 45.9
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.1e-52 211.1 270 45.2
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.1e-52 211.1 276 44.6
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.1e-52 211.1 277 43.7
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 1.1e-52 211.1 277 47.7
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.4e-52 210.7 276 44.6
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 1.4e-52 210.7 279 46.2
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.4e-52 210.7 284 46.8
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.9e-52 210.3 269 45.0
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 2.4e-52 209.9 270 44.1
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 2.4e-52 209.9 277 44.0
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 3.2e-52 209.5 279 46.2
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 4.2e-52 209.1 147 68.0
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 5.4e-52 208.8 275 47.3
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 7.1e-52 208.4 268 44.4
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 9.3e-52 208.0 279 47.7
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 9.3e-52 208.0 279 44.1
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 9.3e-52 208.0 269 46.8
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 9.3e-52 208.0 276 48.6
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.2e-51 207.6 278 45.7
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 1.6e-51 207.2 271 43.5
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 2.1e-51 206.8 270 44.8
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 2.1e-51 206.8 271 45.4
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.1e-51 206.8 279 45.2
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 2.7e-51 206.5 272 44.1
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 2.7e-51 206.5 276 47.5
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 3.5e-51 206.1 264 46.2
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 4.6e-51 205.7 282 44.0
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 7.8e-51 204.9 272 45.6
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.3e-50 204.1 264 46.6
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.7e-50 203.8 278 45.7
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 2.3e-50 203.4 281 44.1
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 2.3e-50 203.4 264 43.9
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.3e-50 203.4 272 45.2
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 3.0e-50 203.0 283 45.2
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 3.0e-50 203.0 275 42.5
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.0e-50 203.0 269 46.8
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 3.9e-50 202.6 137 68.6
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 6.6e-50 201.8 266 43.2
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 6.6e-50 201.8 266 43.2
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 6.6e-50 201.8 263 44.9
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 8.7e-50 201.4 270 44.1
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.1e-49 201.1 269 46.1
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.1e-49 201.1 266 45.9
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.5e-49 200.7 140 67.1
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.5e-49 200.7 268 46.6
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.5e-49 200.7 281 43.4
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.5e-49 200.7 280 43.6
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.9e-49 200.3 274 44.2
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 1.9e-49 200.3 264 47.0
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.9e-49 200.3 270 44.1
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.5e-49 199.9 284 44.7
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 2.5e-49 199.9 277 46.9
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.3e-49 199.5 264 45.5
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 4.3e-49 199.1 264 45.5
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 4.3e-49 199.1 276 46.7
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 5.6e-49 198.7 147 65.3
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 5.6e-49 198.7 270 47.4
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 7.3e-49 198.4 270 44.1
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 7.3e-49 198.4 276 43.5
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 9.6e-49 198.0 279 45.5
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.6e-48 197.2 268 46.3
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.6e-48 197.2 277 44.0
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.8e-48 196.4 277 46.2
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 3.6e-48 196.1 274 44.2
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 3.6e-48 196.1 141 66.0
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 4.8e-48 195.7 266 43.6
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 4.8e-48 195.7 266 44.0
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 8.1e-48 194.9 263 46.4
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 8.1e-48 194.9 278 42.8
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.1e-47 194.5 275 43.3
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 1.4e-47 194.1 274 43.8
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 1.4e-47 194.1 276 43.8
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 3.1e-47 193.0 271 43.9
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 5.3e-47 192.2 137 68.6
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 1.5e-46 190.7 132 65.9
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 2.6e-46 189.9 265 44.5
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 5.8e-46 188.7 263 42.2
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 5.8e-46 188.7 266 43.2
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 7.6e-46 188.3 264 44.3
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 9.9e-46 188.0 260 43.5
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 1.7e-45 187.2 137 63.5
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.7e-45 187.2 145 61.4
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.2e-45 186.8 260 40.0
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 2.2e-45 186.8 265 44.5
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 6.4e-45 185.3 265 43.0
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 8.4e-45 184.9 261 46.0
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.4e-44 183.3 176 54.5
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 7.1e-44 181.8 266 41.4
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 9.3e-44 181.4 269 42.8
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.2e-43 181.0 129 68.2
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 1.6e-43 180.6 264 42.0
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-43 180.6 264 42.0
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-43 180.6 264 42.0
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.1e-43 180.3 263 40.3
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.7e-43 179.9 135 63.0
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 2.7e-43 179.9 266 41.7
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 4.6e-43 179.1 279 39.8
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 7.9e-43 178.3 267 43.4
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 7.9e-43 178.3 143 58.0
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.3e-42 177.6 262 43.1
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.8e-42 177.2 261 42.1
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 2.3e-42 176.8 129 65.1
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 2.3e-42 176.8 261 43.3
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.0e-42 176.4 263 40.3
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 3.0e-42 176.4 270 44.8
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 6.7e-42 175.3 263 40.3
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 8.7e-42 174.9 263 41.8
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.3e-41 172.6 264 40.9
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 3.7e-40 169.5 261 41.0
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 4.8e-40 169.1 245 43.7
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 4.8e-40 169.1 265 39.6
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.1e-39 167.9 267 39.0
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 2.6e-38 163.3 320 35.6
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 5.8e-38 162.2 263 39.2
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 5.8e-38 162.2 126 58.7
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 4.2e-36 156.0 111 65.8
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 7.1e-36 155.2 246 43.1
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 3.5e-35 152.9 144 52.1
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 3.3e-33 146.4 133 54.1
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 8.4e-29 131.7 145 49.0
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 7.1e-28 128.6 96 72.9
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.0e-26 124.8 87 65.5
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.9e-25 120.6 143 47.6
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.3e-21 107.8 101 55.4
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 3.3e-17 93.2 113 40.7
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 5.7e-17 92.4 122 38.5
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 6.3e-16 89.0 131 37.4
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 8.2e-16 88.6 93 49.5
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.3e-15 85.9 272 29.0
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.4e-12 77.8 124 37.9
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 1.9e-12 77.4 101 42.6
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 9.4e-12 75.1 144 34.0
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 2.7e-11 73.6 114 38.6
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 5.1e-10 69.3 74 47.3
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 7.4e-09 65.5 70 47.1


User provided reference genes

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