Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2570 Fragaria x ananassa HOM05D006733 ORTHO05D008406 2.1e-31 138.3 64 100.0
FAN25G0136 Fragaria x ananassa HOM05D006733 ORTHO05D008406 2.1e-31 138.3 64 100.0
FvH4_3g20030 Fragaria vesca HOM05D006733 ORTHO05D008406 6.1e-31 136.7 64 98.4
FAN21G3200 Fragaria x ananassa HOM05D006733 ORTHO05D008406 8.0e-31 136.3 64 98.4
FAN16G0436 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.2e-29 132.5 64 96.9
RcHm_v2.0_Chr5g0033741 Rosa chinensis HOM05D006733 ORTHO05D008406 2.0e-29 131.7 64 95.3
MD03G1227300 Malus domestica HOM05D006733 ORTHO05D008406 3.7e-20 100.9 67 73.1
MD03G1227500 Malus domestica HOM05D006733 ORTHO05D008406 3.7e-20 100.9 67 73.1
MD11G1246800 Malus domestica HOM05D006733 ORTHO05D008406 8.3e-20 99.8 67 73.1
Prupe.4G181500 Prunus persica HOM05D006733 ORTHO05D008406 1.8e-19 98.6 67 71.6
CiPaw.11G169300 Carya illinoinensis HOM05D006733 ORTHO05D008406 4.1e-19 97.4 66 71.2
vmacro11863 Vaccinium macrocarpon HOM05D006733 ORTHO05D008406 4.1e-19 97.4 64 70.3
QL08p021800 Quercus lobata HOM05D006733 ORTHO05D008406 5.4e-19 97.1 66 71.2
Cfa020588 Carpinus fangiana HOM05D006733 ORTHO05D008406 4.6e-18 94.0 67 70.1
CiPaw.12G118000 Carya illinoinensis HOM05D006733 ORTHO05D008406 4.6e-18 94.0 67 68.7
Actinidia12807 Actinidia chinensis HOM05D006733 ORTHO05D008406 7.8e-18 93.2 62 67.7
PGR031G3292 Punica granatum HOM05D006733 ORTHO05D008406 1.0e-17 92.8 63 71.4
Gohir.D11G297700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.7e-17 92.0 66 72.7
Gorai.007G322600 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.7e-17 92.0 66 72.7
Haze_09425 Corylus avellana HOM05D006733 ORTHO05D008406 3.0e-17 91.3 67 68.7
Glyma.06G242900 Glycine max HOM05D006733 ORTHO05D008406 3.0e-17 91.3 65 66.2
Gohir.A11G284800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 3.0e-17 91.3 65 67.7
PGR083G2703 Punica granatum HOM05D006733 ORTHO05D008406 3.0e-17 91.3 67 68.7
SalBow7G1032 Salvia bowleyana HOM05D006733 ORTHO05D008406 5.0e-17 90.5 65 69.2
TWI39G1253 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 5.0e-17 90.5 66 65.2
COL.COLO4_27167 Corchorus olitorius HOM05D006733 ORTHO05D008406 6.6e-17 90.1 63 66.7
Rhsim06G0198700 Rhododendron simsii HOM05D006733 ORTHO05D008406 6.6e-17 90.1 58 75.9
Eucgr.F01127 Eucalyptus grandis HOM05D006733 ORTHO05D008406 8.6e-17 89.7 65 66.2
Gohir.D05G355800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 8.6e-17 89.7 62 67.7
Gorai.009G388200 Gossypium raimondii HOM05D006733 ORTHO05D008406 8.6e-17 89.7 62 67.7
Thecc.07G089300 Theobroma cacao HOM05D006733 ORTHO05D008406 1.1e-16 89.4 64 67.2
Gohir.D05G356700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.5e-16 89.0 62 69.4
Gorai.009G388900 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.5e-16 89.0 62 69.4
Glyma.12G154300 Glycine max HOM05D006733 ORTHO05D008406 1.9e-16 88.6 65 64.6
Gohir.A04G030300 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.5e-16 88.2 62 66.1
Nitab4.5_0000332g0130 Nicotiana tabacum HOM05D006733 ORTHO05D008406 3.3e-16 87.8 67 65.7
Atru.chr2.2617 Acer truncatum HOM05D006733 ORTHO05D008406 4.3e-16 87.4 67 67.2
Duzib170G0030 Durio zibethinus HOM05D006733 ORTHO05D008406 4.3e-16 87.4 62 67.7
Duzib170G0610 Durio zibethinus HOM05D006733 ORTHO05D008406 4.3e-16 87.4 62 67.7
Gohir.D05G356800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 4.3e-16 87.4 63 65.1
Gorai.009G389000 Gossypium raimondii HOM05D006733 ORTHO05D008406 4.3e-16 87.4 63 65.1
Hma1.2p1_0885F.1_g232600 Hydrangea macrophylla HOM05D006733 ORTHO05D008406 4.3e-16 87.4 67 59.7
Gorai.009G388600 Gossypium raimondii HOM05D006733 ORTHO05D008406 5.6e-16 87.0 62 67.7
Migut.M00808 Erythranthe guttata HOM05D006733 ORTHO05D008406 7.3e-16 86.7 65 66.2
Gohir.A04G030100 Gossypium hirsutum HOM05D006733 ORTHO05D008406 9.5e-16 86.3 62 66.1
Nitab4.5_0005764g0010 Nicotiana tabacum HOM05D006733 ORTHO05D008406 9.5e-16 86.3 67 62.7
MBI06_g04174_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 1.2e-15 85.9 65 64.6
SalBow7G4025 Salvia bowleyana HOM05D006733 ORTHO05D008406 1.6e-15 85.5 65 64.6
TWI38G1652 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 1.6e-15 85.5 67 62.7
Atru.chr2.2618 Acer truncatum HOM05D006733 ORTHO05D008406 3.6e-15 84.3 65 64.6
Atru.chr2.2701 Acer truncatum HOM05D006733 ORTHO05D008406 3.6e-15 84.3 65 64.6
Atru.chr2.2702 Acer truncatum HOM05D006733 ORTHO05D008406 4.7e-15 84.0 65 66.2
Aqoxy4G00811 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 4.7e-15 84.0 64 59.4
Lalb_Chr01g0006561 Lupinus albus HOM05D006733 ORTHO05D008406 4.7e-15 84.0 66 60.6
GSVIVG01014340001 Vitis vinifera HOM05D006733 ORTHO05D008406 4.7e-15 84.0 63 65.1
Oeu024912.1 Olea europaea HOM05D006733 ORTHO05D008406 6.2e-15 83.6 65 66.2
Gohir.D05G356200 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.0e-14 82.8 62 66.1
Gorai.009G388700 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.0e-14 82.8 62 66.1
DCAR_013104 Daucus carota HOM05D006733 ORTHO05D008406 1.4e-14 82.4 65 63.1
PGSC0003DMG400015318 Solanum tuberosum HOM05D006733 ORTHO05D008406 1.8e-14 82.0 64 56.2
CAN.G739.12 Capsicum annuum HOM05D006733 ORTHO05D008406 4.0e-14 80.9 64 57.8
Ca_24272_v3 Cicer arietinum L. HOM05D006733 ORTHO05D008406 5.2e-14 80.5 66 57.6
Oeu037948.1 Olea europaea HOM05D006733 ORTHO05D008406 1.2e-13 79.3 64 64.1
Sc16g0006980 Simmondsia chinensis HOM05D006733 ORTHO05D008406 1.5e-13 79.0 67 61.2
BolC3t17038H Brassica oleracea HOM05D006733 ORTHO05D008406 2.0e-13 78.6 64 56.2
Lj3g0014029 Lotus japonicus HOM05D006733 ORTHO05D008406 2.0e-13 78.6 67 59.7
BcaC01g03880 Brassica carinata HOM05D006733 ORTHO05D008406 2.6e-13 78.2 64 57.8
C03p47630 Brassica napus HOM05D006733 ORTHO05D008406 2.6e-13 78.2 64 57.8
arahy.Tifrunner.gnm1.ann1.XP1NDF Arachis hypogaea HOM05D006733 ORTHO05D008406 3.4e-13 77.8 67 59.7
Os01g0200700 Oryza sativa ssp. japonica HOM05D006733 ORTHO05D008406 9.8e-13 76.3 64 64.1
Medtr8g060850 Medicago truncatula HOM05D006733 ORTHO05D008406 1.7e-12 75.5 66 57.6
Potri.001G400100 Populus trichocarpa HOM05D006733 ORTHO05D008406 1.7e-12 75.5 67 58.2
Nn1g04086 Nelumbo nucifera HOM05D006733 ORTHO05D008406 4.9e-12 73.9 59 54.2
Hund02223 Selenicereus undatus HOM05D006733 ORTHO05D008406 1.4e-11 72.4 63 57.1
Manes.15G086700 Manihot esculenta HOM05D006733 ORTHO05D008406 1.9e-11 72.0 67 56.7
Rhsim06G0198600 Rhododendron simsii HOM05D006733 ORTHO05D008406 1.9e-11 72.0 60 61.7
Aqoxy4G00809 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 2.4e-11 71.6 64 56.2
Carub.0003s1505 Capsella rubella HOM05D006733 ORTHO05D008406 2.4e-11 71.6 66 54.5
Thhalv10021853m.g Eutrema salsugineum HOM05D006733 ORTHO05D008406 2.4e-11 71.6 66 56.1
Lj5g0017019 Lotus japonicus HOM05D006733 ORTHO05D008406 2.4e-11 71.6 50 68.0
CARHR090380 Cardamine hirsuta HOM05D006733 ORTHO05D008406 3.2e-11 71.2 66 53.0
Sc03g0009960 Simmondsia chinensis HOM05D006733 ORTHO05D008406 4.1e-11 70.9 65 56.9
Gohir.D01G050200 Gossypium hirsutum HOM05D006733 ORTHO05D008406 7.0e-11 70.1 66 54.5
Gorai.002G070100 Gossypium raimondii HOM05D006733 ORTHO05D008406 7.0e-11 70.1 66 54.5
A05p34080 Brassica napus HOM05D006733 ORTHO05D008406 9.2e-11 69.7 61 55.7
BraA05t22229Z Brassica rapa HOM05D006733 ORTHO05D008406 9.2e-11 69.7 61 55.7
Cc05_g12060 Coffea canephora HOM05D006733 ORTHO05D008406 9.2e-11 69.7 67 53.7
Aa31LG8G2570 Aethionema arabicum HOM05D006733 ORTHO05D008406 1.2e-10 69.3 60 55.0
PSO541G4814 Papaver somniferum HOM05D006733 ORTHO05D008406 2.7e-10 68.2 62 54.8
BcaC05g28981 Brassica carinata HOM05D006733 ORTHO05D008406 4.6e-10 67.4 61 52.5
BolC5t33870H Brassica oleracea HOM05D006733 ORTHO05D008406 4.6e-10 67.4 61 52.5
Sed0028027 Sechium edule HOM05D006733 ORTHO05D008406 3.0e-09 64.7 64 56.2
BcaB06g29562 Brassica carinata HOM05D006733 ORTHO05D008406 3.9e-09 64.3 61 50.8
Duzib213G0299 Durio zibethinus HOM05D006733 ORTHO05D008406 3.9e-09 64.3 63 60.3
arahy.Tifrunner.gnm1.ann1.KTTP1X Arachis hypogaea HOM05D006733 ORTHO05D008406 5.0e-09 63.9 56 58.9
Potri.011G118900 Populus trichocarpa HOM05D006733 ORTHO05D008406 5.0e-09 63.9 67 53.7
arahy.Tifrunner.gnm1.ann1.W6Q2IR Arachis hypogaea HOM05D006733 ORTHO05D008406 1.1e-08 62.8 56 57.1
ClCG10G006940 Citrullus lanatus HOM05D006733 ORTHO05D008406 1.5e-08 62.4 49 63.3
Gohir.A04G029916 Gossypium hirsutum HOM05D006733 ORTHO05D008406 3.3e-08 61.2 46 63.0
HPP92_020054 Vanilla planifolia HOM05D006733 ORTHO05D008406 3.3e-08 61.2 55 54.5
Nn1g04087 Nelumbo nucifera HOM05D006733 ORTHO05D008406 7.3e-08 60.1 63 52.4
MBI07_g30176_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 2.8e-07 58.2 63 54.0
Hund22902 Selenicereus undatus HOM05D006733 ORTHO05D008406 2.8e-07 58.2 61 49.2
ATR0737G148 Amborella trichopoda HOM05D006733 ORTHO05D008406 4.7e-07 57.4 51 54.9
EL10Ac4g08173 Beta vulgaris HOM05D006733 ORTHO05D008406 1.8e-06 55.5 64 42.2
DCAR_020986 Daucus carota HOM05D006733 ORTHO05D008406 1.8e-06 55.5 65 53.8
CsaV3_3G006310 Cucumis sativus L. HOM05D006733 ORTHO05D008406 3.1e-06 54.7 49 55.1
DCAR_019551 Daucus carota HOM05D006733 ORTHO05D008406 3.1e-06 54.7 62 41.9


User provided reference genes

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