Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 1.2e-97 359.8 176 100.0
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-97 359.8 176 100.0
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.9e-97 357.1 176 99.4
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 4.1e-93 344.7 176 94.9
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 1.5e-92 342.8 176 94.3
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 7.7e-92 340.5 175 93.7
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.0e-91 340.1 175 93.7
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 5.0e-91 337.8 174 93.1
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 8.5e-91 337.0 174 94.3
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 5.5e-90 334.3 174 93.1
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.2e-89 333.2 174 92.0
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.1e-89 332.4 174 91.4
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 2.1e-89 332.4 174 92.0
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 2.7e-89 332.0 174 93.1
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 4.7e-89 331.3 174 92.5
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 4.7e-89 331.3 174 90.8
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 4.7e-89 331.3 173 92.5
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 6.1e-89 330.9 174 92.5
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 1.0e-88 330.1 174 92.0
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 1.0e-88 330.1 174 92.0
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 1.0e-88 330.1 174 92.0
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 2.3e-88 328.9 174 90.2
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 2.3e-88 328.9 174 92.0
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 3.9e-88 328.2 174 89.7
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 3.9e-88 328.2 174 90.2
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 3.9e-88 328.2 173 91.3
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 3.9e-88 328.2 174 90.8
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 5.2e-88 327.8 174 89.1
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 6.7e-88 327.4 174 89.7
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 8.8e-88 327.0 174 89.7
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 1.1e-87 326.6 174 90.8
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 2.6e-87 325.5 172 90.7
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 2.6e-87 325.5 174 90.8
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 7.4e-87 323.9 174 88.5
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 9.7e-87 323.6 174 90.2
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 2.2e-86 322.4 172 90.7
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 2.2e-86 322.4 172 89.5
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 2.2e-86 322.4 172 91.3
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 2.8e-86 322.0 176 89.2
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 2.8e-86 322.0 174 90.2
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 2.8e-86 322.0 174 88.5
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 3.7e-86 321.6 173 88.4
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 6.3e-86 320.9 174 88.5
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 6.3e-86 320.9 174 87.9
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 8.2e-86 320.5 172 89.5
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 1.1e-85 320.1 174 87.4
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 1.8e-85 319.3 173 87.9
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 1.8e-85 319.3 172 89.5
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 2.4e-85 318.9 173 87.9
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 2.4e-85 318.9 172 89.0
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 2.4e-85 318.9 175 87.4
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 3.1e-85 318.5 172 88.4
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 3.1e-85 318.5 173 88.4
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 5.3e-85 317.8 174 87.4
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 5.3e-85 317.8 173 88.4
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 7.0e-85 317.4 173 87.3
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 7.0e-85 317.4 172 87.8
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 9.1e-85 317.0 173 87.3
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 9.1e-85 317.0 172 87.8
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 9.1e-85 317.0 172 87.8
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 5.9e-84 314.3 174 87.4
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 5.9e-84 314.3 174 86.2
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 7.7e-84 313.9 173 86.1
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 7.7e-84 313.9 173 86.1
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 7.7e-84 313.9 173 87.3
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 1.0e-83 313.5 171 87.7
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 1.3e-83 313.2 171 86.5
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 2.2e-83 312.4 172 87.2
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 2.9e-83 312.0 172 86.0
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 2.9e-83 312.0 172 86.0
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 3.8e-83 311.6 172 85.5
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 3.8e-83 311.6 174 85.6
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 5.0e-83 311.2 174 86.2
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 5.0e-83 311.2 174 86.8
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 5.0e-83 311.2 174 85.1
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 6.5e-83 310.8 172 85.5
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.1e-82 310.1 174 85.1
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 1.5e-82 309.7 172 85.5
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.5e-82 309.7 172 87.8
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 3.2e-82 308.5 172 86.6
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 3.2e-82 308.5 172 85.5
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 4.2e-82 308.1 173 83.2
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 4.2e-82 308.1 172 83.7
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 4.2e-82 308.1 172 83.7
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 4.2e-82 308.1 172 83.7
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 4.2e-82 308.1 172 83.7
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 9.4e-82 307.0 172 84.9
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 1.6e-81 306.2 174 86.8
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 2.7e-81 305.4 225 71.1
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.7e-81 305.4 189 79.9
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 6.1e-81 304.3 172 83.1
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 8.8e-80 300.4 180 82.8
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 8.8e-80 300.4 172 83.1
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.7e-78 296.2 158 91.8
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.2e-78 295.8 171 82.5
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 3.7e-78 295.0 165 84.8
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.8e-78 294.7 171 81.9
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 2.4e-77 292.4 159 88.7
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 7.0e-77 290.8 173 81.5
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 3.4e-71 271.9 153 88.2
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.6e-68 263.1 151 84.1
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 3.5e-68 261.9 153 84.3
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 1.3e-67 260.0 174 69.0
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.7e-67 259.6 174 67.8
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 6.5e-67 257.7 174 67.8
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 1.5e-66 256.5 137 89.8
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 1.2e-65 253.4 176 69.9
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 8.8e-64 247.3 147 83.0
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 4.9e-62 241.5 130 90.8
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.8e-61 239.6 163 76.7
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 1.8e-61 239.6 182 68.1
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 5.4e-61 238.0 127 89.0
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 7.0e-61 237.7 133 85.0
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 3.5e-60 235.3 128 88.3
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 3.5e-60 235.3 134 87.3
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 1.0e-59 233.8 130 88.5
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 2.3e-59 232.6 127 88.2
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 2.9e-59 232.3 172 70.3
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 6.6e-59 231.1 130 86.2
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 8.6e-59 230.7 176 63.6
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.5e-58 229.9 127 87.4
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.5e-58 229.9 127 87.4
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 9.5e-58 227.3 127 84.3
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 3.9e-51 205.3 126 81.7
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 4.0e-48 195.3 128 78.1
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 6.8e-48 194.5 132 72.7
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 1.1e-45 187.2 131 74.8
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.2e-44 183.7 126 71.4
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.0e-43 179.1 92 94.6
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.5e-42 176.8 91 95.6
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.2e-41 171.4 94 90.4
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.4e-40 170.2 95 90.5
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.8e-40 169.9 104 81.7
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.8e-40 169.9 101 88.1
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.0e-39 166.4 97 84.5
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 2.2e-38 162.9 93 87.1
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 7.8e-36 154.5 80 91.2
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 5.6e-34 148.3 93 76.3
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 4.7e-33 145.2 88 79.5
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.6e-31 137.9 77 89.6
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 8.4e-30 134.4 99 68.7
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 2.4e-29 132.9 73 89.0
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.6e-28 130.2 80 81.2
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 9.6e-26 120.9 192 35.4
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 8.1e-25 117.9 67 77.6
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 6.4e-22 108.2 90 64.4
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 2.3e-19 99.8 57 84.2
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 1.3e-11 73.9 37 83.8


User provided reference genes

Program Settings