Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 3.3e-108 395.2 219 100.0
FAN11G2382 Fragaria x ananassa HOM05D003590 ORTHO05D004290 3.3e-108 395.2 219 100.0
FAN16G0742 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.2e-88 329.3 219 87.2
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 1.0e-77 293.9 219 77.6
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 4.2e-71 271.9 225 72.9
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 1.6e-70 270.0 225 72.0
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 3.5e-70 268.9 224 71.4
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 7.9e-70 267.7 225 71.6
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 7.9e-70 267.7 224 71.4
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 3.9e-69 265.4 224 70.1
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 1.9e-68 263.1 224 69.2
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 4.3e-68 261.9 225 69.8
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 4.3e-68 261.9 225 69.8
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 7.4e-68 261.2 225 69.8
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 7.4e-68 261.2 225 69.8
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 1.6e-67 260.0 225 69.8
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 4.8e-67 258.5 225 69.3
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 6.2e-67 258.1 225 68.9
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 1.4e-66 256.9 224 66.5
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 2.4e-66 256.1 223 68.6
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 4.0e-66 255.4 224 67.4
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 5.3e-66 255.0 225 68.0
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 6.9e-66 254.6 225 68.4
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 2.6e-65 252.7 224 67.9
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 3.4e-65 252.3 225 67.6
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 4.5e-65 251.9 262 61.5
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 5.8e-65 251.5 224 67.0
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 7.6e-65 251.1 253 63.2
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 7.6e-65 251.1 224 66.5
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 1.0e-64 250.8 224 67.9
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 1.3e-64 250.4 225 67.1
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 1.7e-64 250.0 225 67.1
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 2.2e-64 249.6 224 66.1
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.9e-64 249.2 237 66.2
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 3.8e-64 248.8 263 61.2
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 3.8e-64 248.8 265 61.1
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 4.9e-64 248.4 224 66.1
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 6.5e-64 248.1 224 65.6
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 6.5e-64 248.1 224 67.4
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 6.5e-64 248.1 224 67.0
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 8.4e-64 247.7 225 65.8
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 1.1e-63 247.3 224 65.6
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 1.4e-63 246.9 225 66.2
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 1.9e-63 246.5 224 66.1
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 1.9e-63 246.5 224 65.2
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 2.5e-63 246.1 225 66.2
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 2.5e-63 246.1 225 66.2
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 2.5e-63 246.1 225 66.2
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 2.5e-63 246.1 224 65.6
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 2.5e-63 246.1 224 65.6
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 4.2e-63 245.4 225 66.7
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 4.2e-63 245.4 224 67.0
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 4.2e-63 245.4 224 66.5
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 4.2e-63 245.4 224 65.2
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 5.5e-63 245.0 225 66.2
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 5.5e-63 245.0 224 65.2
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 5.5e-63 245.0 224 66.5
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.2e-62 243.8 224 66.1
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 1.2e-62 243.8 224 66.1
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 1.6e-62 243.4 226 64.6
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 1.6e-62 243.4 226 65.0
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 1.6e-62 243.4 225 65.3
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 2.1e-62 243.0 225 65.3
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 2.1e-62 243.0 224 65.2
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 2.1e-62 243.0 225 65.3
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 2.7e-62 242.7 225 66.2
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 2.7e-62 242.7 224 65.2
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 2.7e-62 242.7 225 65.3
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 4.6e-62 241.9 225 65.8
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 4.6e-62 241.9 225 66.2
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 6.0e-62 241.5 225 65.3
ECA246G2345 Erigeron canadensis HOM05D003590 ORTHO05D004290 6.0e-62 241.5 225 63.6
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 6.0e-62 241.5 225 66.2
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 6.0e-62 241.5 225 66.2
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 7.9e-62 241.1 224 64.3
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 7.9e-62 241.1 225 65.3
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 1.3e-61 240.4 224 65.2
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 1.8e-61 240.0 224 64.3
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 1.8e-61 240.0 225 64.4
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 2.3e-61 239.6 224 65.2
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 3.0e-61 239.2 224 65.2
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 3.0e-61 239.2 224 64.3
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 3.0e-61 239.2 224 64.7
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 3.9e-61 238.8 224 64.7
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 5.1e-61 238.4 224 64.3
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 6.7e-61 238.0 225 65.3
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 1.1e-60 237.3 224 63.4
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 1.5e-60 236.9 224 64.3
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 1.9e-60 236.5 224 63.8
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 1.9e-60 236.5 224 63.8
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 2.5e-60 236.1 225 64.0
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 4.3e-60 235.3 223 65.0
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 4.3e-60 235.3 223 62.3
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 9.6e-60 234.2 223 62.3
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 9.6e-60 234.2 223 61.9
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 9.6e-60 234.2 285 54.4
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 9.6e-60 234.2 225 63.6
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 9.6e-60 234.2 222 64.0
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 9.6e-60 234.2 225 63.1
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 1.3e-59 233.8 223 61.9
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 1.3e-59 233.8 224 62.9
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 1.3e-59 233.8 223 64.6
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 1.6e-59 233.4 223 62.8
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 1.6e-59 233.4 224 63.4
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 3.7e-59 232.3 223 61.4
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 3.7e-59 232.3 224 61.2
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 3.7e-59 232.3 224 61.2
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 4.8e-59 231.9 223 61.4
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 4.8e-59 231.9 223 61.4
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 6.3e-59 231.5 223 61.4
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 6.3e-59 231.5 223 61.4
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 8.2e-59 231.1 223 61.4
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 1.4e-58 230.3 224 62.5
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 4.1e-58 228.8 224 62.1
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 5.3e-58 228.4 223 59.6
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 2.6e-57 226.1 224 60.7
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 2.6e-57 226.1 252 58.7
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 3.4e-57 225.7 223 63.7
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 1.3e-56 223.8 207 64.3
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 2.9e-56 222.6 225 62.2
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 5.0e-56 221.9 224 60.3
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 9.3e-55 217.6 238 58.4
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 1.2e-54 217.2 224 58.9
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 1.6e-54 216.9 225 60.4
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 2.1e-54 216.5 237 57.0
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 2.7e-54 216.1 251 56.2
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 4.6e-54 215.3 224 57.6
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 6.1e-54 214.9 184 69.0
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 6.1e-54 214.9 226 57.1
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 1.3e-53 213.8 218 61.5
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 1.8e-53 213.4 277 53.1
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 3.0e-53 212.6 224 56.2
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 1.5e-52 210.3 227 55.5
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 2.2e-51 206.5 310 46.8
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 4.8e-51 205.3 188 65.4
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 4.8e-51 205.3 224 54.9
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 6.3e-51 204.9 226 55.8
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 3.1e-50 202.6 288 49.3
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 6.9e-50 201.4 279 51.6
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 2.6e-49 199.5 213 60.6
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 1.7e-48 196.8 225 56.4
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 8.5e-48 194.5 224 53.6
QL10p052769 Quercus lobata HOM05D003590 ORTHO05D004290 1.4e-47 193.7 165 67.3
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 1.6e-46 190.3 223 55.2
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 7.9e-46 188.0 197 59.4
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 2.3e-45 186.4 288 46.9
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 3.0e-45 186.0 223 55.6
TWI36G0235 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 3.0e-45 186.0 156 70.5
Dinv15392 Davidia involucrata HOM05D003590 ORTHO05D004290 5.1e-45 185.3 168 67.3
CBR_g79424 Chara braunii HOM05D003590 ORTHO05D004290 1.3e-43 180.6 232 50.9
vmacro19565 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.7e-43 180.3 164 66.5
Oeu010166.1 Olea europaea HOM05D003590 ORTHO05D004290 2.2e-40 169.9 139 68.3
Pp3c10_14840 Physcomitrium patens HOM05D003590 ORTHO05D004290 3.8e-40 169.1 198 53.0
CSS0008581 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 1.1e-39 167.5 139 67.6
CSS0013807 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 7.9e-38 161.4 139 66.2
PRCOL_00001168 Prasinoderma coloniale HOM05D003590 ORTHO05D004290 5.2e-37 158.7 225 48.9
Actinidia06797 Actinidia chinensis HOM05D003590 ORTHO05D004290 1.1e-36 157.5 162 63.0
Lsat_1_v5_gn_1_99340 Lactuca sativa HOM05D003590 ORTHO05D004290 5.3e-34 148.7 126 66.7
SHI32795 Sapria himalayana HOM05D003590 ORTHO05D004290 4.7e-30 135.6 220 46.8
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 7.5e-28 128.3 145 53.1
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 1.4e-26 124.0 220 44.1
CBR_g16972 Chara braunii HOM05D003590 ORTHO05D004290 1.7e-24 117.1 203 40.4
AagrBONN_evm.TU.Sc2ySwM_228.2375 Anthoceros agrestis HOM05D003590 ORTHO05D004290 6.1e-22 108.6 139 47.5
Lj4g0013306 Lotus japonicus HOM05D003590 ORTHO05D004290 6.1e-22 108.6 94 62.8
ECA246G3922 Erigeron canadensis HOM05D003590 ORTHO05D004290 1.0e-21 107.8 222 39.2
Cre11.g468050 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 3.0e-21 106.3 150 44.7
Cre13.g583550 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 1.3e-19 100.9 228 35.5
AUR62000295 Chenopodium quinoa HOM05D003590 ORTHO05D004290 4.1e-18 95.9 104 59.6
CSS0007792 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 5.5e-15 85.5 78 65.4
QL11p022255 Quercus lobata HOM05D003590 ORTHO05D004290 5.2e-13 79.0 70 65.7
Oeu010165.1 Olea europaea HOM05D003590 ORTHO05D004290 8.8e-13 78.2 78 61.5
MCO10G215 Micromonas commoda HOM05D003590 ORTHO05D004290 7.5e-12 75.1 225 33.3
Hma1.2p1_0831F.1_g225440 Hydrangea macrophylla HOM05D003590 ORTHO05D004290 8.3e-11 71.6 63 63.5
CiPaw.09G006800 Carya illinoinensis HOM05D003590 ORTHO05D004290 1.4e-10 70.9 65 69.2
vmacro19566 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.4e-10 70.9 68 60.3
GSVIVG01036624001 Vitis vinifera HOM05D003590 ORTHO05D004290 3.1e-10 69.7 63 66.7
MD15G1434500 Malus domestica HOM05D003590 ORTHO05D004290 7.0e-10 68.6 58 65.5
arahy.Tifrunner.gnm1.ann1.Z3LWFH Arachis hypogaea HOM05D000145 ORTHO05D000115 3.8e-08 62.8 64 56.2
FAN19G0667 Fragaria x ananassa HOM05D003590 ORTHO05D004290 5.0e-08 62.4 63 58.7


User provided reference genes

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