Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2380 Fragaria x ananassa HOM05D007357 ORTHO05D009314 2.0e-65 252.3 130 100.0
FvH4_3g08760 Fragaria vesca HOM05D007357 ORTHO05D009314 2.3e-32 142.5 79 97.5
FvH4_5g24040 Fragaria vesca HOM05D007357 ORTHO05D009314 1.1e-31 140.2 79 94.9
FAN18G2492 Fragaria x ananassa HOM05D007357 ORTHO05D009314 1.1e-31 140.2 79 94.9
FAN18G4511 Fragaria x ananassa HOM05D007357 ORTHO05D009314 1.1e-31 140.2 79 94.9
RcHm_v2.0_Chr7g0213521 Rosa chinensis HOM05D007357 ORTHO05D009314 1.1e-31 140.2 79 94.9
FAN08G0560 Fragaria x ananassa HOM05D007357 ORTHO05D009314 3.3e-31 138.7 79 93.7
Prupe.5G019800 Prunus persica HOM05D007357 ORTHO05D009314 1.6e-25 119.8 79 79.7
MD06G1015900 Malus domestica HOM05D007357 ORTHO05D009314 1.0e-24 117.1 79 79.7
Lj2g0006468 Lotus japonicus HOM05D007357 ORTHO05D009314 4.3e-23 111.7 79 73.4
arahy.Tifrunner.gnm1.ann1.0Q5JCD Arachis hypogaea HOM05D007357 ORTHO05D009314 5.6e-23 111.3 79 73.4
arahy.Tifrunner.gnm1.ann1.JPN6B0 Arachis hypogaea HOM05D007357 ORTHO05D009314 5.6e-23 111.3 79 73.4
Actinidia14748 Actinidia chinensis HOM05D007357 ORTHO05D009314 2.1e-22 109.4 111 56.8
CSS0024010 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 8.1e-22 107.5 77 72.7
CiPaw.11G103400 Carya illinoinensis HOM05D007357 ORTHO05D009314 1.1e-21 107.1 77 72.7
Phvul.002G128100 Phaseolus vulgaris HOM05D007357 ORTHO05D009314 1.8e-21 106.3 79 70.9
QL02p024644 Quercus lobata HOM05D007357 ORTHO05D009314 2.4e-21 105.9 77 72.7
Rhsim07G0138300 Rhododendron simsii HOM05D007357 ORTHO05D009314 2.4e-21 105.9 77 70.1
VMungo1215G1709 Vigna mungo HOM05D007357 ORTHO05D009314 4.0e-21 105.1 76 71.1
TPR.G17258 Trifolium pratense HOM05D007357 ORTHO05D009314 6.8e-21 104.4 82 64.6
Glyma.01G150100 Glycine max HOM05D007357 ORTHO05D009314 8.9e-21 104.0 79 69.6
Haze_08057 Corylus avellana HOM05D007357 ORTHO05D009314 1.2e-20 103.6 115 48.7
Haze_08047 Corylus avellana HOM05D007357 ORTHO05D009314 2.6e-20 102.4 77 67.5
Lalb_Chr05g0215411 Lupinus albus HOM05D007357 ORTHO05D009314 3.4e-20 102.1 79 68.4
Glyma.09G214200 Glycine max HOM05D007357 ORTHO05D009314 4.4e-20 101.7 79 68.4
Medtr5g026790 Medicago truncatula HOM05D007357 ORTHO05D009314 7.6e-20 100.9 79 64.6
Psat2g142360 Pisum sativum HOM05D007357 ORTHO05D009314 1.3e-19 100.1 79 63.3
Cc08_g05250 Coffea canephora HOM05D007357 ORTHO05D009314 2.2e-19 99.4 77 66.2
EL10Ac5g11952 Beta vulgaris HOM05D000153 ORTHO05D000118 3.8e-19 98.6 75 66.7
Cfa012604 Carpinus fangiana HOM05D007357 ORTHO05D009314 6.4e-19 97.8 76 63.2
CsaV3_3G030320 Cucumis sativus L. HOM05D007357 ORTHO05D009314 6.4e-19 97.8 77 66.2
Gohir.A12G203400 Gossypium hirsutum HOM05D007357 ORTHO05D009314 8.4e-19 97.4 77 64.9
Gohir.D12G206000 Gossypium hirsutum HOM05D007357 ORTHO05D009314 1.1e-18 97.1 77 64.9
Gorai.008G220900 Gossypium raimondii HOM05D007357 ORTHO05D009314 1.1e-18 97.1 77 64.9
Oeu059314.1 Olea europaea HOM05D007357 ORTHO05D009314 1.1e-18 97.1 83 62.7
ClCG07G002370 Citrullus lanatus HOM05D007357 ORTHO05D009314 1.9e-18 96.3 77 64.9
MELO3C022754.2 Cucumis melo HOM05D007357 ORTHO05D009314 4.2e-18 95.1 77 63.6
DCAR_008186 Daucus carota HOM05D007357 ORTHO05D009314 5.4e-18 94.7 77 59.7
Sed0001819 Sechium edule HOM05D007357 ORTHO05D009314 9.2e-18 94.0 77 62.3
Oeu042216.1 Olea europaea HOM05D007357 ORTHO05D009314 1.2e-17 93.6 76 64.5
TAR629G3058 Trochodendron aralioides HOM05D007357 ORTHO05D009314 2.1e-17 92.8 108 50.9
Sabra01G0102000 Salix brachista HOM05D007357 ORTHO05D009314 2.7e-17 92.4 78 59.0
Ah.07g201200 Amaranthus hybridus HOM05D007357 ORTHO05D009314 4.6e-17 91.7 77 61.0
Sed0016962 Sechium edule HOM05D007357 ORTHO05D009314 4.6e-17 91.7 77 62.3
COL.COLO4_16848 Corchorus olitorius HOM05D007357 ORTHO05D009314 7.8e-17 90.9 79 59.5
Potri.001G132232 Populus trichocarpa HOM05D007357 ORTHO05D009314 1.0e-16 90.5 79 57.0
Sc07g0008390 Simmondsia chinensis HOM05D007357 ORTHO05D009314 1.0e-16 90.5 76 61.8
Sopen08g024580 Solanum pennellii HOM05D007357 ORTHO05D009314 1.0e-16 90.5 75 61.3
Peaxi162Scf00408g00712 Petunia axillaris HOM05D007357 ORTHO05D009314 1.3e-16 90.1 77 61.0
PGSC0003DMG400030879 Solanum tuberosum HOM05D007357 ORTHO05D009314 1.3e-16 90.1 75 60.0
Nitab4.5_0001033g0080 Nicotiana tabacum HOM05D007357 ORTHO05D009314 2.3e-16 89.4 77 59.7
MD06G1016300 Malus domestica HOM05D007357 ORTHO05D009314 5.1e-16 88.2 59 81.4
CAN.G1269.3 Capsicum annuum HOM05D007357 ORTHO05D009314 6.6e-16 87.8 75 60.0
CANSAT21G2249 Cannabis sativa HOM05D007357 ORTHO05D009314 8.7e-16 87.4 77 63.6
Nn4g25471 Nelumbo nucifera HOM05D007357 ORTHO05D009314 1.5e-15 86.7 75 60.0
PSO063G0202 Papaver somniferum HOM05D007357 ORTHO05D009314 3.3e-15 85.5 88 50.0
Ciclev10002529m.g Citrus clementina HOM05D007357 ORTHO05D009314 5.6e-15 84.7 75 58.7
TWI34G1422 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 5.6e-15 84.7 77 54.5
TWI34G1682 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 5.6e-15 84.7 77 54.5
AUR62027337 Chenopodium quinoa HOM05D007357 ORTHO05D009314 7.3e-15 84.3 75 54.7
AUR62044266 Chenopodium quinoa HOM05D007357 ORTHO05D009314 7.3e-15 84.3 75 54.7
Hund11140 Selenicereus undatus HOM05D007357 ORTHO05D009314 7.3e-15 84.3 72 62.5
Migut.A00548 Erythranthe guttata HOM05D007357 ORTHO05D009314 1.3e-14 83.6 77 57.1
ECA246G3443 Erigeron canadensis HOM05D007357 ORTHO05D009314 3.6e-14 82.0 77 54.5
Nitab4.5_0001786g0050 Nicotiana tabacum HOM05D007357 ORTHO05D009314 3.6e-14 82.0 76 55.3
HanXRQChr17g0539311 Helianthus annuus HOM05D007357 ORTHO05D009314 8.1e-14 80.9 76 50.0
Eucgr.D02601 Eucalyptus grandis HOM05D007357 ORTHO05D009314 1.1e-13 80.5 75 56.0
Manes.17G008100 Manihot esculenta HOM05D007357 ORTHO05D009314 1.8e-13 79.7 88 50.0
Cpa.g.sc223.2 Carica papaya HOM05D007357 ORTHO05D009314 2.4e-13 79.3 75 53.3
AUR62007392 Chenopodium quinoa HOM05D007357 ORTHO05D009314 2.4e-13 79.3 75 52.0
HPP92_025510 Vanilla planifolia HOM05D007357 ORTHO05D009314 2.4e-13 79.3 75 53.3
HPP92_025525 Vanilla planifolia HOM05D007357 ORTHO05D009314 9.0e-13 77.4 75 52.0
Aqoxy5G03983 Aquilegia oxysepala HOM05D007357 ORTHO05D009314 1.2e-12 77.0 76 50.0
vmacro13970 Vaccinium macrocarpon HOM05D007357 ORTHO05D009314 2.0e-12 76.3 51 76.5
Os07g0452600 Oryza sativa ssp. japonica HOM05D007357 ORTHO05D009314 2.6e-12 75.9 76 50.0
unitig_32.g10966 Utricularia gibba HOM05D007357 ORTHO05D009314 4.4e-12 75.1 77 49.4
CSS0020054 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 7.6e-12 74.3 57 68.4
MD06G1016600 Malus domestica HOM05D007357 ORTHO05D009314 9.9e-12 73.9 66 65.2
Lsat_1_v5_gn_3_28060 Lactuca sativa HOM05D007357 ORTHO05D009314 1.7e-11 73.2 72 51.4
ATR0829G081 Amborella trichopoda HOM05D007357 ORTHO05D009314 2.2e-11 72.8 77 44.2
CSS0037866 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 2.9e-11 72.4 57 66.7
CDE12G0114 Ceratophyllum demersum HOM05D007357 ORTHO05D009314 2.9e-11 72.4 83 45.8
Os08g0180400 Oryza sativa ssp. japonica HOM05D007357 ORTHO05D009314 6.4e-11 71.2 74 45.9
Zm00001eb096560 Zea mays HOM05D007357 ORTHO05D009314 1.1e-10 70.5 74 48.6
arahy.Tifrunner.gnm1.ann1.F5EPY8 Arachis hypogaea HOM05D007357 ORTHO05D009314 2.4e-10 69.3 83 50.6
arahy.Tifrunner.gnm1.ann1.L1IIZH Arachis hypogaea HOM05D007357 ORTHO05D009314 9.3e-10 67.4 48 72.9
Hma1.2p1_0784F.1_g217055 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 4.6e-09 65.1 48 66.7
Hma1.2p1_0944F.1_g240000 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 4.6e-09 65.1 48 66.7
CSS0046502 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 6.0e-09 64.7 46 73.9
Duzib068G0657 Durio zibethinus HOM05D007357 ORTHO05D009314 6.0e-09 64.7 48 68.8
Hma1.2p1_1179F.1_g264570 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 1.3e-08 63.5 52 59.6
Oeu059300.1 Olea europaea HOM05D007357 ORTHO05D009314 1.7e-08 63.2 101 39.6
Ca_25098_v3 Cicer arietinum L. HOM05D007357 ORTHO05D009314 3.0e-08 62.4 46 67.4
Solyc08g075930.4 Solanum lycopersicum HOM05D007357 ORTHO05D009314 1.1e-07 60.5 46 65.2
ECA240G0146 Erigeron canadensis HOM05D007357 ORTHO05D009314 4.3e-07 58.5 75 41.3


User provided reference genes

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