Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 2.5e-93 345.5 187 100.0
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 2.5e-93 345.5 187 100.0
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 2.8e-92 342.0 187 98.9
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 8.2e-92 340.5 187 98.4
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 5.1e-86 321.2 184 95.7
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 1.3e-68 263.5 190 80.5
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 7.0e-67 257.7 187 78.6
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 7.2e-64 247.7 180 78.9
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 5.7e-61 238.0 181 74.0
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 9.7e-61 237.3 180 74.4
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 9.7e-61 237.3 190 73.7
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 1.4e-59 233.4 182 70.3
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 1.4e-59 233.4 187 71.7
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 1.8e-59 233.0 185 74.1
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 5.9e-58 228.0 187 69.5
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 7.7e-58 227.6 175 74.9
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.2e-57 226.1 173 74.0
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 2.9e-57 225.7 191 70.2
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 2.9e-57 225.7 180 70.6
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 8.5e-57 224.2 180 71.1
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 1.1e-56 223.8 180 72.8
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 1.1e-56 223.8 174 70.7
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 1.1e-56 223.8 174 70.7
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 1.1e-56 223.8 174 73.0
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 1.5e-56 223.4 175 71.4
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 3.2e-56 222.2 171 72.5
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 3.2e-56 222.2 168 75.0
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 5.5e-56 221.5 193 67.9
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 9.4e-56 220.7 180 70.0
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.2e-55 220.3 190 68.4
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 2.7e-55 219.2 174 70.7
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 3.6e-55 218.8 172 73.3
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 3.6e-55 218.8 188 67.0
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 3.6e-55 218.8 185 68.6
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 4.7e-55 218.4 193 67.9
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 4.7e-55 218.4 180 70.0
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 1.4e-54 216.9 173 69.9
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 8.8e-54 214.2 141 82.3
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 1.2e-53 213.8 190 69.5
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 1.5e-53 213.4 194 65.5
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 2.6e-53 212.6 189 68.3
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 7.5e-53 211.1 190 68.9
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 1.3e-52 210.3 185 70.8
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 1.7e-52 209.9 180 73.9
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 1.8e-51 206.5 184 66.3
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 1.8e-51 206.5 173 71.1
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 3.1e-51 205.7 180 70.6
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 3.1e-51 205.7 149 76.5
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 7.0e-51 204.5 186 66.1
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 9.1e-51 204.1 172 70.3
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 9.1e-51 204.1 176 68.8
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 3.5e-50 202.2 175 68.6
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 5.9e-50 201.4 197 65.5
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 7.7e-50 201.1 172 70.9
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 7.7e-50 201.1 172 70.9
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 6.5e-49 198.0 158 70.3
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 1.9e-48 196.4 185 67.6
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 2.5e-48 196.1 200 62.0
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 2.5e-48 196.1 200 62.0
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 3.2e-48 195.7 193 62.7
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 4.2e-48 195.3 173 67.1
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 7.2e-48 194.5 180 65.6
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 9.4e-48 194.1 168 66.7
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 9.4e-48 194.1 193 62.7
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 9.4e-48 194.1 202 62.9
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 1.6e-47 193.4 190 63.7
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 2.1e-47 193.0 188 67.0
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 8.0e-47 191.0 181 64.6
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 8.0e-47 191.0 187 58.3
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 8.0e-47 191.0 187 64.2
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 1.4e-46 190.3 186 61.8
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 1.4e-46 190.3 194 62.4
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 1.8e-46 189.9 188 62.8
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 1.8e-46 189.9 188 62.8
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 1.8e-46 189.9 197 62.4
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 1.8e-46 189.9 184 61.4
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 1.8e-46 189.9 187 64.7
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 2.3e-46 189.5 194 61.9
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 3.0e-46 189.1 191 64.4
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.2e-45 187.2 223 56.1
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 2.0e-45 186.4 189 64.6
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 2.0e-45 186.4 191 63.9
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 2.6e-45 186.0 186 60.8
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 3.4e-45 185.7 182 63.7
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 3.4e-45 185.7 177 62.7
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 5.7e-45 184.9 129 78.3
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 7.5e-45 184.5 205 60.0
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 7.5e-45 184.5 187 62.0
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 1.3e-44 183.7 180 61.7
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 1.7e-44 183.3 173 67.1
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 2.8e-44 182.6 175 62.3
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 3.7e-44 182.2 191 62.8
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 4.9e-44 181.8 192 59.4
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 6.3e-44 181.4 180 61.1
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 1.1e-43 180.6 186 59.1
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 1.4e-43 180.3 186 59.7
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 1.8e-43 179.9 172 62.8
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 2.4e-43 179.5 170 62.4
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 5.4e-43 178.3 180 60.6
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 7.0e-43 177.9 182 59.9
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 3.5e-42 175.6 189 63.0
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 8.6e-41 171.0 115 78.3
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 8.6e-41 171.0 115 78.3
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 8.6e-41 171.0 115 78.3
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 4.3e-40 168.7 114 79.8
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 5.6e-40 168.3 130 70.8
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 1.2e-39 167.2 118 79.7
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 8.0e-39 164.5 268 45.1
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 1.1e-35 154.1 174 56.3
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 1.1e-32 144.1 180 55.0
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 3.1e-30 136.0 118 66.9
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 4.0e-30 135.6 125 64.0
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 7.5e-29 131.3 177 49.2
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 9.8e-29 131.0 129 59.7
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 9.8e-29 131.0 175 49.1
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 4.9e-28 128.6 354 34.5
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 1.1e-27 127.5 148 58.8
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 1.6e-26 123.6 182 48.9
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 2.7e-26 122.9 191 48.2
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 1.2e-23 114.0 114 59.6
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 1.1e-22 110.9 167 44.9
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 6.8e-22 108.2 77 70.1
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 7.8e-18 94.7 109 56.9
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 1.7e-17 93.6 78 62.8
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 1.9e-16 90.1 107 52.3
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 4.3e-16 89.0 66 72.7
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 2.2e-12 76.6 91 48.4
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 1.0e-09 67.8 113 47.8
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 1.7e-09 67.0 53 69.8
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 8.6e-09 64.7 80 51.2
MD16G1275000 Malus domestica HOM05D000404 ORTHO05D002003 8.9e-06 54.7 35 88.6


User provided reference genes

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