Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.0e-154 547.7 279 100.0
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.0e-86 323.2 254 72.8
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 7.4e-81 304.7 256 71.1
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 1.2e-67 260.8 134 100.0
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.7e-64 249.2 229 65.5
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.2e-54 217.6 198 62.6
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 3.2e-52 209.5 226 56.6
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 1.0e-50 204.5 193 61.1
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 4.0e-50 202.6 230 54.8
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 6.8e-50 201.8 212 55.7
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.3e-45 187.6 198 56.6
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.3e-45 187.6 215 51.6
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 6.5e-45 185.3 238 50.8
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 8.6e-45 184.9 196 56.6
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.9e-44 183.7 193 54.9
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.2e-44 183.0 195 55.4
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 5.5e-44 182.2 193 56.0
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 9.5e-44 181.4 215 52.1
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 9.5e-44 181.4 225 48.0
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.2e-43 181.0 200 55.5
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 2.1e-43 180.3 203 54.7
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.0e-42 177.9 198 54.5
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.8e-42 177.2 249 45.8
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.8e-42 177.2 188 54.3
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 3.0e-42 176.4 195 52.8
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 4.0e-42 176.0 188 55.3
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 4.0e-42 176.0 188 55.9
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 6.8e-42 175.3 256 46.9
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 8.8e-42 174.9 183 56.3
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.2e-41 174.5 198 54.0
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 4.4e-41 172.6 192 56.2
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.3e-40 171.0 251 46.2
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.2e-40 170.2 257 46.7
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 8.3e-40 168.3 182 56.0
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.1e-39 167.9 191 54.5
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.4e-39 167.5 186 57.5
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.1e-39 166.0 207 50.7
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 7.0e-39 165.2 191 55.0
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 2.0e-38 163.7 196 53.6
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 2.7e-38 163.3 183 53.6
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 2.7e-38 163.3 251 45.4
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.5e-38 162.9 196 48.5
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 7.8e-38 161.8 186 48.9
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 7.8e-38 161.8 188 52.1
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.9e-37 159.8 196 52.6
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.9e-37 159.8 196 52.6
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 5.0e-37 159.1 207 50.2
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.1e-36 157.9 185 49.7
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 1.5e-36 157.5 177 53.1
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.9e-36 157.1 205 50.2
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.5e-36 156.8 174 50.6
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 5.6e-36 155.6 205 46.8
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 5.6e-36 155.6 192 46.9
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 7.3e-36 155.2 165 54.5
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 9.5e-36 154.8 190 50.5
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.6e-35 154.1 158 57.0
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 2.8e-35 153.3 192 49.5
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 4.7e-35 152.5 196 51.0
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 6.1e-35 152.1 254 41.3
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 8.0e-35 151.8 192 48.4
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 2.3e-34 150.2 192 46.9
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 3.0e-34 149.8 192 47.4
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 3.0e-34 149.8 192 47.4
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 5.2e-34 149.1 193 46.6
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.2e-33 147.9 185 47.0
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 1.2e-33 147.9 187 48.7
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 2.0e-33 147.1 185 45.9
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 7.5e-33 145.2 208 44.7
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.2e-32 143.7 196 43.4
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 4.1e-31 139.4 178 44.9
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 9.2e-31 138.3 184 46.7
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 9.2e-31 138.3 171 46.8
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 7.8e-30 135.2 197 41.6
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.0e-29 134.8 197 41.6
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 2.1e-27 127.1 252 36.1
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 8.9e-26 121.7 192 38.0
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 8.9e-26 121.7 182 41.2
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 2.0e-25 120.6 134 52.2
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.4e-23 113.6 72 79.2
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 4.6e-22 109.4 71 77.5
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 5.0e-21 105.9 250 31.6
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 2.8e-19 100.1 265 30.9
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 3.6e-19 99.8 133 53.4
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 6.4e-16 89.0 269 28.3
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 8.3e-16 88.6 199 31.2
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 1.1e-15 88.2 184 31.5
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.9e-15 87.4 212 25.0
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 1.9e-15 87.4 269 29.4
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.9e-15 87.4 261 27.6
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 2.4e-15 87.0 257 28.8
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 2.4e-15 87.0 197 29.9
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 5.4e-15 85.9 258 26.7
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 7.1e-15 85.5 91 56.0
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 1.6e-14 84.3 187 29.9
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.1e-14 84.0 91 56.0
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.1e-14 84.0 244 29.1
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.7e-14 83.6 79 62.0
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.5e-14 83.2 264 27.3
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.5e-14 83.2 236 27.5
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.6e-14 82.8 256 28.1
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 4.6e-14 82.8 203 28.1
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 6.0e-14 82.4 260 27.7
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 6.0e-14 82.4 247 26.7
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 6.0e-14 82.4 253 27.7
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 7.8e-14 82.0 252 26.2
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 7.8e-14 82.0 215 28.8
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.0e-13 81.6 275 27.6
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.3e-13 81.3 192 31.2
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.3e-13 81.3 256 28.5
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.7e-13 80.9 257 27.2
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.7e-13 80.9 257 26.1
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.3e-13 80.5 168 29.2
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 2.3e-13 80.5 171 31.0
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.3e-13 80.5 274 25.5
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 3.0e-13 80.1 258 25.6
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 3.0e-13 80.1 244 29.9
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 3.0e-13 80.1 170 27.6
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 3.9e-13 79.7 75 64.0
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 6.6e-13 79.0 235 28.5
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 8.6e-13 78.6 193 27.5
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.1e-12 78.2 220 27.7
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 1.5e-12 77.8 195 28.2
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 1.5e-12 77.8 193 29.5
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 1.9e-12 77.4 244 25.4
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 2.5e-12 77.0 193 28.5
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.5e-12 77.0 79 59.5
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 2.5e-12 77.0 208 27.4
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.3e-12 76.6 192 29.7
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 4.3e-12 76.3 271 24.0
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 4.3e-12 76.3 262 26.7
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 7.3e-12 75.5 221 23.5
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 7.3e-12 75.5 193 25.9
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 7.3e-12 75.5 171 27.5
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 9.5e-12 75.1 262 26.7
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 9.5e-12 75.1 193 27.5
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 1.6e-11 74.3 205 28.3
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 1.6e-11 74.3 201 28.4
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 2.1e-11 73.9 270 25.6
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.8e-11 73.6 243 26.7
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 4.7e-11 72.8 89 52.8
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.4e-10 71.2 191 26.7
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 3.1e-10 70.1 213 25.8
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 3.1e-10 70.1 158 30.4
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 5.2e-10 69.3 218 25.7
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 6.8e-10 68.9 193 26.4
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 6.8e-10 68.9 152 28.9
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.5e-09 67.8 213 23.5
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 2.0e-09 67.4 265 26.8
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.6e-09 67.0 83 39.8
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 2.6e-09 67.0 210 25.7
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.4e-09 66.6 267 25.1
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 5.8e-09 65.9 191 29.3
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 1.7e-08 64.3 163 28.8
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 1.7e-08 64.3 265 26.4
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 3.8e-08 63.2 40 77.5
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 1.1e-07 61.6 78 38.5
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.9e-07 60.8 134 31.3
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 3.2e-07 60.1 196 25.5


User provided reference genes

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