Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 2.8e-191 671.8 337 100.0
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 2.8e-191 671.8 337 100.0
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.3e-185 652.9 338 97.9
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 2.3e-185 652.1 338 97.6
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 2.3e-185 652.1 338 97.9
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 4.5e-149 531.6 354 81.6
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 4.2e-46 189.5 298 45.3
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 2.7e-45 186.8 330 42.4
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 1.5e-43 181.0 328 43.9
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 3.3e-43 179.9 302 44.7
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 1.3e-42 177.9 335 42.1
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 1.6e-42 177.6 330 43.6
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 2.2e-42 177.2 299 43.1
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 2.8e-42 176.8 298 42.6
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 1.1e-41 174.9 298 42.3
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 1.4e-41 174.5 273 45.8
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 3.1e-41 173.3 275 45.1
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 1.2e-40 171.4 324 39.8
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 1.5e-40 171.0 275 44.4
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 2.6e-40 170.2 304 42.8
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 2.6e-40 170.2 302 43.7
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 4.5e-40 169.5 316 41.8
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 7.7e-40 168.7 303 41.9
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 5.0e-39 166.0 282 41.1
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 1.9e-38 164.1 327 38.5
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 2.5e-38 163.7 280 43.9
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 3.2e-38 163.3 280 42.9
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 1.2e-37 161.4 258 43.0
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 2.1e-37 160.6 344 39.5
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 6.1e-37 159.1 258 42.6
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 6.1e-37 159.1 277 44.0
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 1.0e-36 158.3 312 39.4
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 1.4e-36 157.9 254 42.9
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 1.8e-36 157.5 272 44.1
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 1.8e-36 157.5 277 43.0
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 1.8e-36 157.5 307 43.0
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.3e-36 157.1 272 40.4
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 3.0e-36 156.8 336 39.0
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 3.9e-36 156.4 295 39.0
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 3.9e-36 156.4 297 40.7
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 3.9e-36 156.4 244 43.9
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 5.1e-36 156.0 312 39.7
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 5.1e-36 156.0 260 45.0
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 5.1e-36 156.0 279 43.4
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 6.7e-36 155.6 312 40.7
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 8.8e-36 155.2 301 40.9
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 1.5e-35 154.5 299 40.8
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 4.3e-35 152.9 232 44.8
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 4.3e-35 152.9 232 44.8
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 7.4e-35 152.1 277 43.7
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 7.4e-35 152.1 304 40.1
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 9.7e-35 151.8 279 39.8
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 1.3e-34 151.4 256 43.0
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 4.8e-34 149.4 294 39.1
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 6.3e-34 149.1 258 41.9
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 8.2e-34 148.7 246 43.1
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 1.1e-33 148.3 261 42.1
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 1.1e-33 148.3 272 40.1
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 1.1e-33 148.3 314 38.2
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 1.1e-33 148.3 256 43.4
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 1.8e-33 147.5 297 38.0
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 4.1e-33 146.4 258 41.1
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 4.1e-33 146.4 258 41.1
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 4.1e-33 146.4 234 45.7
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 4.1e-33 146.4 251 43.0
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 4.1e-33 146.4 302 38.7
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 5.3e-33 146.0 338 38.5
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 6.9e-33 145.6 307 38.8
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 9.1e-33 145.2 279 38.4
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 1.2e-32 144.8 258 41.1
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 1.2e-32 144.8 258 41.1
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 1.5e-32 144.4 270 40.7
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 2.6e-32 143.7 286 40.9
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 1.7e-31 141.0 240 40.0
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 5.0e-31 139.4 328 34.1
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 5.0e-31 139.4 317 36.3
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 6.5e-31 139.0 256 38.3
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 6.5e-31 139.0 256 38.3
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 1.9e-30 137.5 319 36.1
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 3.2e-30 136.7 245 40.4
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 4.2e-30 136.3 231 40.7
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 1.6e-29 134.4 278 40.3
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 2.1e-29 134.0 249 40.6
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 2.1e-29 134.0 270 40.7
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 4.7e-29 132.9 273 38.8
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 1.8e-28 131.0 284 38.4
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 2.0e-27 127.5 232 42.2
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 3.3e-27 126.7 232 38.4
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 2.2e-26 124.0 237 42.2
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 4.1e-25 119.8 277 36.8
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 2.0e-24 117.5 232 37.9
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 2.0e-24 117.5 232 37.9
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 4.5e-24 116.3 252 39.7
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 2.9e-23 113.6 316 32.9
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 5.0e-23 112.8 316 35.8
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 2.7e-21 107.1 247 34.0
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 1.1e-19 101.7 273 34.8
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 7.0e-17 92.4 129 48.1
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 4.5e-16 89.7 139 43.9
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 4.7e-13 79.7 164 38.4
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 1.8e-12 77.8 147 39.5
Nitab4.5_0000340g0060 Nicotiana tabacum HOM05D007298 ORTHO05D009226 7.2e-06 55.8 79 41.8


User provided reference genes

Program Settings