Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2127 Fragaria x ananassa HOM05D002956 ORTHO05D008031 4.0e-139 498.0 246 100.0
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 1.1e-88 330.5 186 90.9
FAN16G1792 Fragaria x ananassa HOM05D002956 ORTHO05D008031 8.5e-81 304.3 164 93.9
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 6.8e-70 268.1 166 81.9
TAR369G0726 Trochodendron aralioides HOM05D002956 ORTHO05D008031 1.5e-69 266.9 170 77.6
Dinv36148 Davidia involucrata HOM05D002956 ORTHO05D008031 2.8e-68 262.7 165 78.2
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 2.8e-68 262.7 176 74.4
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 2.4e-67 259.6 168 77.4
Sabra09G0051500 Salix brachista HOM05D002956 ORTHO05D008031 3.1e-67 259.2 175 72.6
Aqoxy2G00442 Aquilegia oxysepala HOM05D002956 ORTHO05D008031 5.4e-67 258.5 179 70.9
QL01p016670 Quercus lobata HOM05D002956 ORTHO05D008031 7.0e-67 258.1 182 70.9
COL.COLO4_07384 Corchorus olitorius HOM05D002956 ORTHO05D008031 1.6e-66 256.9 168 75.6
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 1.0e-65 254.2 162 77.2
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 1.3e-65 253.8 168 75.0
Sc06g0004740 Simmondsia chinensis HOM05D002956 ORTHO05D008031 1.7e-65 253.4 168 77.4
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 5.0e-65 251.9 165 75.8
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 5.0e-65 251.9 162 78.4
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 6.6e-65 251.5 159 77.4
DCAR_006894 Daucus carota HOM05D002956 ORTHO05D008031 8.6e-65 251.1 168 72.6
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 8.6e-65 251.1 159 78.0
CiPaw.14G111000 Carya illinoinensis HOM05D002956 ORTHO05D008031 1.5e-64 250.4 165 75.8
Haze_23261 Corylus avellana HOM05D002956 ORTHO05D008031 1.9e-64 250.0 160 75.6
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 5.6e-64 248.4 165 74.5
HanXRQChr12g0380421 Helianthus annuus HOM05D002956 ORTHO05D008031 7.3e-64 248.1 167 74.9
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 9.5e-64 247.7 159 74.8
AL4G20000 Arabidopsis lyrata HOM05D002956 ORTHO05D008031 1.6e-63 246.9 174 67.8
CSS0006448 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D008031 2.8e-63 246.1 161 74.5
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 2.8e-63 246.1 180 66.1
arahy.Tifrunner.gnm1.ann1.XLU01S Arachis hypogaea HOM05D002956 ORTHO05D008031 4.7e-63 245.4 164 75.0
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 4.7e-63 245.4 165 74.5
Thhalv10002083m.g Eutrema salsugineum HOM05D002956 ORTHO05D008031 6.1e-63 245.0 175 68.6
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 1.4e-62 243.8 211 60.2
AT2G26810 Arabidopsis thaliana HOM05D002956 ORTHO05D008031 1.8e-62 243.4 162 72.2
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 1.8e-62 243.4 164 72.0
MBI19_g19211_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D008031 2.3e-62 243.0 169 72.2
Sed0014482 Sechium edule HOM05D002956 ORTHO05D008031 2.3e-62 243.0 168 72.0
Carub.0004s0727 Capsella rubella HOM05D002956 ORTHO05D008031 5.2e-62 241.9 162 73.5
Lj6g0022582 Lotus japonicus HOM05D002956 ORTHO05D008031 1.5e-61 240.4 170 71.8
CARHR118990 Cardamine hirsuta HOM05D002956 ORTHO05D008031 3.4e-61 239.2 167 71.3
ClCG02G022710 Citrullus lanatus HOM05D002956 ORTHO05D008031 5.7e-61 238.4 181 69.1
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 5.7e-61 238.4 164 72.0
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 7.5e-61 238.0 163 72.4
Glyma.08G154800 Glycine max HOM05D002956 ORTHO05D008031 7.5e-61 238.0 188 64.9
Sp4g08660 Schrenkiella parvula HOM05D002956 ORTHO05D008031 9.8e-61 237.7 172 68.0
Hund07424 Selenicereus undatus HOM05D002956 ORTHO05D008031 1.3e-60 237.3 181 67.4
Cpa.g.sc34.183 Carica papaya HOM05D002956 ORTHO05D008031 1.7e-60 236.9 152 75.7
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 2.9e-60 236.1 167 70.7
Actinidia06980 Actinidia chinensis HOM05D002956 ORTHO05D008031 3.7e-60 235.7 155 75.5
Sopen11g024800 Solanum pennellii HOM05D002956 ORTHO05D008031 4.9e-60 235.3 172 67.4
Ciclev10018203m.g Citrus clementina HOM05D002956 ORTHO05D008031 8.3e-60 234.6 180 68.3
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 8.3e-60 234.6 185 65.9
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 1.1e-59 234.2 170 69.4
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 1.1e-59 234.2 177 67.2
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 1.4e-59 233.8 183 65.0
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 3.2e-59 232.6 180 65.6
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 5.4e-59 231.9 166 71.1
Duzib150G0193 Durio zibethinus HOM05D002956 ORTHO05D008031 9.2e-59 231.1 175 69.7
Lalb_Chr15g0078511 Lupinus albus HOM05D002956 ORTHO05D008031 4.6e-58 228.8 159 71.7
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 4.6e-58 228.8 188 63.3
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 5.9e-58 228.4 166 69.9
Oeu061696.1 Olea europaea HOM05D002956 ORTHO05D008031 7.8e-58 228.0 198 63.6
SGA_v2.0_scaffold26G11398 Striga asiatica HOM05D002956 ORTHO05D008031 3.9e-57 225.7 182 66.5
Cc01_g06320 Coffea canephora HOM05D002956 ORTHO05D008031 1.5e-56 223.8 157 71.3
AUR62000217 Chenopodium quinoa HOM05D002956 ORTHO05D008031 1.9e-56 223.4 159 69.8
arahy.Tifrunner.gnm1.ann1.1Z9FJQ Arachis hypogaea HOM05D002956 ORTHO05D008031 2.8e-55 219.5 164 70.1
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 4.7e-55 218.8 169 68.0
PGSC0003DMG400031243 Solanum tuberosum HOM05D002956 ORTHO05D008031 6.2e-55 218.4 159 67.3
VMungo1080G1429 Vigna mungo HOM05D002956 ORTHO05D008031 4.0e-54 215.7 179 62.6
PGR119G0612 Punica granatum HOM05D002956 ORTHO05D008031 8.9e-54 214.5 193 59.6
ATR0307G044 Amborella trichopoda HOM05D002956 ORTHO05D008031 3.4e-53 212.6 182 58.8
EL10Ac4g10091 Beta vulgaris HOM05D002956 ORTHO05D008031 5.8e-53 211.8 165 65.5
PSO384G3941 Papaver somniferum HOM05D002956 ORTHO05D008031 6.4e-52 208.4 180 59.4
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 1.2e-50 204.1 149 67.8
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 2.7e-50 203.0 155 65.8
SEGI_28475 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 6.0e-50 201.8 165 57.6
Rhsim13G0206100 Rhododendron simsii HOM05D002956 ORTHO05D008031 3.0e-49 199.5 165 63.6
RcHm_v2.0_Chr5g0050251 Rosa chinensis HOM05D002956 ORTHO05D008031 5.0e-49 198.7 107 93.5
Zm00001eb329010 Zea mays HOM05D002956 ORTHO05D008031 5.0e-49 198.7 144 66.7
Nitab4.5_0007012g0050 Nicotiana tabacum HOM05D002956 ORTHO05D008031 8.6e-49 198.0 146 68.5
Lsat_1_v5_gn_5_63100 Lactuca sativa HOM05D002956 ORTHO05D008031 2.8e-47 193.0 224 50.0
FAN25G3179 Fragaria x ananassa HOM05D002956 ORTHO05D008031 6.2e-47 191.8 102 92.2
AUR62006562 Chenopodium quinoa HOM05D002956 ORTHO05D008031 6.4e-44 181.8 194 53.6
FAN21G3062 Fragaria x ananassa HOM05D002956 ORTHO05D008031 2.4e-43 179.9 91 96.7
Atru.chr3.3008 Acer truncatum HOM05D002956 ORTHO05D008031 1.6e-42 177.2 107 81.3
Migut.N02382 Erythranthe guttata HOM05D002956 ORTHO05D008031 2.7e-42 176.4 117 70.9
CDE04G0360 Ceratophyllum demersum HOM05D002956 ORTHO05D008031 1.0e-41 174.5 127 69.3
Psat4g060320 Pisum sativum HOM05D002956 ORTHO05D008031 8.6e-41 171.4 130 65.4
FAN25G0087 Fragaria x ananassa HOM05D002956 ORTHO05D008031 1.5e-40 170.6 108 79.6
AagrBONN_evm.TU.Sc2ySwM_228.3973 Anthoceros agrestis HOM05D002956 ORTHO05D008031 4.3e-40 169.1 152 52.6
MELO3C014548.2 Cucumis melo HOM05D002956 ORTHO05D008031 4.3e-40 169.1 107 75.7
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 6.8e-38 161.8 185 44.9
HPP92_001025 Vanilla planifolia HOM05D002956 ORTHO05D008031 2.0e-37 160.2 104 73.1
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 1.3e-36 157.5 172 45.3
SEGI_15484 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 1.9e-35 153.7 116 59.5
Solyc11g065040.2 Solanum lycopersicum HOM05D002956 ORTHO05D008031 3.0e-33 146.4 111 63.1
Aa31LG5G8970 Aethionema arabicum HOM05D002956 ORTHO05D008031 5.1e-33 145.6 175 49.1
Nitab4.5_0004018g0060 Nicotiana tabacum HOM05D002956 ORTHO05D008031 5.1e-33 145.6 157 54.1
CAN.G468.2 Capsicum annuum HOM05D002956 ORTHO05D008031 3.3e-32 142.9 123 58.5
Peaxi162Scf00004g04220 Petunia axillaris HOM05D002956 ORTHO05D008031 2.8e-31 139.8 106 63.2
Ah.06g194770 Amaranthus hybridus HOM05D002956 ORTHO05D008031 4.7e-31 139.0 162 48.1
Psat2g099480 Pisum sativum HOM05D002956 ORTHO05D008031 1.2e-26 124.4 151 47.0
vmacro04048 Vaccinium macrocarpon HOM05D002956 ORTHO05D008031 2.1e-26 123.6 101 66.3
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 1.0e-25 121.3 168 43.5
Lj2C795T0 Lonicera japonica HOM05D002956 ORTHO05D008031 3.9e-25 119.4 83 68.7
Zm00001eb110260 Zea mays HOM05D002956 ORTHO05D008031 5.6e-24 115.5 164 42.1
CBR_g39846 Chara braunii HOM05D002956 ORTHO05D008031 1.6e-23 114.0 114 47.4
Psat2g099560 Pisum sativum HOM05D001082 ORTHO05D001538 3.1e-22 109.8 134 46.3
Psat5g130120 Pisum sativum HOM05D001082 ORTHO05D001538 3.4e-21 106.3 130 46.9
CAN.G1049.9 Capsicum annuum HOM05D002956 ORTHO05D008031 2.4e-19 100.1 90 55.6
unitig_22.g6189 Utricularia gibba HOM05D002956 ORTHO05D008031 2.8e-15 86.7 74 59.5
MELO3C020642.2 Cucumis melo HOM05D002956 ORTHO05D008031 9.9e-13 78.2 55 67.3
Sopen08g018250 Solanum pennellii HOM05D001920 ORTHO05D004895 1.7e-12 77.4 116 37.9
Nitab4.5_0003458g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 2.2e-12 77.0 132 35.6
vmacro04047 Vaccinium macrocarpon HOM05D002956 ORTHO05D008031 2.9e-12 76.6 55 65.5
Peaxi162Scf00070g00315 Petunia axillaris HOM05D001920 ORTHO05D004895 6.4e-12 75.5 132 34.8
SHI18719 Sapria himalayana HOM05D001920 ORTHO05D004895 6.4e-12 75.5 117 35.9
Solyc08g062770.3 Solanum lycopersicum HOM05D001920 ORTHO05D004895 8.4e-12 75.1 132 36.4
ATR0716G012 Amborella trichopoda HOM05D001920 ORTHO05D004895 1.6e-10 70.9 118 35.6
DCAR_004400 Daucus carota HOM05D001920 ORTHO05D004895 1.6e-10 70.9 116 33.6
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 1.6e-10 70.9 179 30.2
SEGI_34471 Sequoiadendron giganteum HOM05D001920 ORTHO05D004895 1.6e-10 70.9 136 33.1
arahy.Tifrunner.gnm1.ann1.ZYB4F6 Arachis hypogaea HOM05D001920 ORTHO05D004895 2.1e-10 70.5 116 33.6
Nitab4.5_0003730g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 2.1e-10 70.5 124 33.9
Prupe.1G408900 Prunus persica HOM05D001920 ORTHO05D004895 2.1e-10 70.5 168 31.0
Aqoxy7G04000 Aquilegia oxysepala HOM05D001920 ORTHO05D004895 2.7e-10 70.1 175 25.1
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 2.7e-10 70.1 116 31.9
Oeu018622.1 Olea europaea HOM05D001920 ORTHO05D004895 3.5e-10 69.7 116 36.2
PSO210G7567 Papaver somniferum HOM05D001920 ORTHO05D004895 3.5e-10 69.7 188 26.1
arahy.Tifrunner.gnm1.ann1.Z4JLGK Arachis hypogaea HOM05D001920 ORTHO05D004895 4.6e-10 69.3 116 33.6
CAN.G1312.6 Capsicum annuum HOM05D001920 ORTHO05D004895 4.6e-10 69.3 132 33.3
Sed0026712 Sechium edule HOM05D001920 ORTHO05D004895 4.6e-10 69.3 118 34.7
MELO3C016884.2 Cucumis melo HOM05D001920 ORTHO05D004895 6.0e-10 68.9 118 35.6
Gohir.D06G085100 Gossypium hirsutum HOM05D001920 ORTHO05D004895 6.0e-10 68.9 116 34.5
Gorai.010G098400 Gossypium raimondii HOM05D001920 ORTHO05D004895 6.0e-10 68.9 116 34.5
ClCG05G018010 Citrullus lanatus HOM05D001920 ORTHO05D004895 7.9e-10 68.6 116 34.5
Thecc.09G057600 Theobroma cacao HOM05D001920 ORTHO05D004895 7.9e-10 68.6 116 34.5
FvH4_2g31511 Fragaria vesca HOM05D001920 ORTHO05D004895 1.0e-09 68.2 116 33.6
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.0e-09 68.2 116 33.6
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.0e-09 68.2 116 33.6
Nn8g38776 Nelumbo nucifera HOM05D001920 ORTHO05D004895 1.8e-09 67.4 116 33.6
Aa31LG5G9590 Aethionema arabicum HOM05D001920 ORTHO05D004895 3.0e-09 66.6 116 34.5
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 3.9e-09 66.2 127 29.9
PGR044G1960 Punica granatum HOM05D001920 ORTHO05D004895 5.1e-09 65.9 116 32.8
PSO210G1339 Papaver somniferum HOM05D001920 ORTHO05D004895 6.7e-09 65.5 188 25.5
Sc23g0005760 Simmondsia chinensis HOM05D001920 ORTHO05D004895 6.7e-09 65.5 160 28.8
Cc08_g10920 Coffea canephora HOM05D001920 ORTHO05D004895 8.7e-09 65.1 116 32.8
COL.COLO4_21091 Corchorus olitorius HOM05D001920 ORTHO05D004895 1.1e-08 64.7 116 32.8
Duzib168G0495 Durio zibethinus HOM05D001920 ORTHO05D004895 1.1e-08 64.7 172 26.7
MD08G1065700 Malus domestica HOM05D001920 ORTHO05D004895 2.5e-08 63.5 116 31.9
SGA_v2.0_scaffold20G09202 Striga asiatica HOM05D001920 ORTHO05D004895 3.3e-08 63.2 120 34.2
SalBow4G0898 Salvia bowleyana HOM05D001920 ORTHO05D004895 4.3e-08 62.8 116 34.5
Dinv04583 Davidia involucrata HOM05D002956 ORTHO05D008031 1.3e-07 61.2 35 77.1
RcHm_v2.0_Chr6g0311271 Rosa chinensis HOM05D001920 ORTHO05D004895 1.3e-07 61.2 173 28.3
CSS0039142 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D008031 4.8e-07 59.3 50 52.0
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 6.2e-07 58.9 164 25.6
MD06G1042700 Malus domestica HOM05D001602 ORTHO05D001470 6.2e-07 58.9 130 31.5
Atru.chr2.263 Acer truncatum HOM05D001602 ORTHO05D001470 1.1e-06 58.2 131 30.5
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 1.1e-06 58.2 99 30.3
Cc08_g01690 Coffea canephora HOM05D001602 ORTHO05D001470 1.1e-06 58.2 121 31.4
Psat0s4720g0080 Pisum sativum HOM05D002956 ORTHO05D008031 1.1e-06 58.2 49 57.1
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 1.4e-06 57.8 77 35.1
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 1.4e-06 57.8 74 35.1
Duzib068G0907 Durio zibethinus HOM05D001602 ORTHO05D001470 1.4e-06 57.8 127 30.7
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 1.8e-06 57.4 118 31.4
RcHm_v2.0_Chr7g0207961 Rosa chinensis HOM05D001602 ORTHO05D001470 1.8e-06 57.4 121 29.8
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 2.4e-06 57.0 74 35.1
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 2.4e-06 57.0 74 35.1
SMO364G0506 Selaginella moellendorffii HOM05D005677 ORTHO05D006966 2.4e-06 57.0 115 34.8
Medtr4g057605 Medicago truncatula HOM05D001602 ORTHO05D001470 4.0e-06 56.2 149 24.8
SMO270G0089 Selaginella moellendorffii HOM05D055329 ORTHO05D008031 4.0e-06 56.2 62 48.4
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 5.3e-06 55.8 98 37.8
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 5.3e-06 55.8 97 35.1
TPR.G31348 Trifolium pratense HOM05D001602 ORTHO05D001470 5.3e-06 55.8 120 30.0
arahy.Tifrunner.gnm1.ann1.W1MG13 Arachis hypogaea HOM05D001602 ORTHO05D001470 6.9e-06 55.5 122 27.9
Glyma.12G079900 Glycine max HOM05D001602 ORTHO05D001470 6.9e-06 55.5 149 26.2
MCO11G671 Micromonas commoda HOM05D005677 ORTHO05D006966 6.9e-06 55.5 123 30.9
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 9.0e-06 55.1 78 35.9
Ciclev10033731m.g Citrus clementina HOM05D001602 ORTHO05D001470 9.0e-06 55.1 134 31.3
Eucgr.K02332 Eucalyptus grandis HOM05D001602 ORTHO05D001470 9.0e-06 55.1 117 30.8
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 9.0e-06 55.1 162 26.5
Phvul.011G084600 Phaseolus vulgaris HOM05D001602 ORTHO05D001470 9.0e-06 55.1 149 26.2
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 9.0e-06 55.1 136 25.7
Psat1g018240 Pisum sativum HOM05D001602 ORTHO05D001470 9.0e-06 55.1 120 30.0


User provided reference genes

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