Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g32290 Fragaria vesca HOM05D006634 ORTHO05D008282 2.6e-40 168.3 86 100.0
FAN11G2087 Fragaria x ananassa HOM05D006634 ORTHO05D008282 2.6e-40 168.3 86 100.0
FAN21G3892 Fragaria x ananassa HOM05D006634 ORTHO05D008282 1.2e-37 159.5 86 95.3
FAN25G2760 Fragaria x ananassa HOM05D006634 ORTHO05D008282 1.1e-35 152.9 85 89.4
FAN16G1798 Fragaria x ananassa HOM05D006634 ORTHO05D008282 5.5e-35 150.6 79 96.2
RcHm_v2.0_Chr5g0059081 Rosa chinensis HOM05D006634 ORTHO05D008282 1.4e-30 136.0 86 80.2
MD03G1117700 Malus domestica HOM05D006634 ORTHO05D008282 1.7e-28 129.0 86 77.9
MD11G1136000 Malus domestica HOM05D006634 ORTHO05D008282 2.9e-28 128.3 86 77.9
Prupe.6G101400 Prunus persica HOM05D006634 ORTHO05D008282 2.9e-28 128.3 86 75.6
CANSAT54G0287 Cannabis sativa HOM05D006634 ORTHO05D008282 1.4e-22 109.4 86 62.8
CANSAT54G1094 Cannabis sativa HOM05D006634 ORTHO05D008282 1.4e-22 109.4 86 62.8
CiPaw.13G113000 Carya illinoinensis HOM05D006634 ORTHO05D008282 1.8e-22 109.0 86 64.0
CANSAT54G0497 Cannabis sativa HOM05D006634 ORTHO05D008282 2.4e-22 108.6 87 62.1
CANSAT54G1359 Cannabis sativa HOM05D006634 ORTHO05D008282 2.4e-22 108.6 87 62.1
CANSAT54G1657 Cannabis sativa HOM05D006634 ORTHO05D008282 2.4e-22 108.6 87 62.1
CANSAT54G2640 Cannabis sativa HOM05D006634 ORTHO05D008282 2.4e-22 108.6 87 62.1
CANSAT54G2841 Cannabis sativa HOM05D006634 ORTHO05D008282 2.4e-22 108.6 87 62.1
Dinv32744 Davidia involucrata HOM05D006634 ORTHO05D008282 4.1e-22 107.8 86 62.8
Hma1.2p1_0058F.1_g032540 Hydrangea macrophylla HOM05D006634 ORTHO05D008282 4.1e-22 107.8 86 65.1
CSS0041274 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 5.3e-22 107.5 86 62.8
TWI79G0418 Tripterygium wilfordii HOM05D006634 ORTHO05D008282 3.5e-21 104.8 86 62.8
GSVIVG01025186001 Vitis vinifera HOM05D006634 ORTHO05D008282 3.5e-21 104.8 86 60.5
Ciclev10029701m.g Citrus clementina HOM05D006634 ORTHO05D008282 5.9e-21 104.0 86 61.6
CANSAT54G1506 Cannabis sativa HOM05D006634 ORTHO05D008282 1.0e-20 103.2 87 59.8
TPR.G15540 Trifolium pratense HOM05D006634 ORTHO05D008282 1.3e-20 102.8 86 60.5
Atru.chr3.3630 Acer truncatum HOM05D006634 ORTHO05D008282 2.9e-20 101.7 86 58.1
SalBow3G1265 Salvia bowleyana HOM05D006634 ORTHO05D008282 2.9e-20 101.7 86 61.6
Gorai.009G107000 Gossypium raimondii HOM05D006634 ORTHO05D008282 8.5e-20 100.1 86 61.6
Psat7g225160 Pisum sativum HOM05D006634 ORTHO05D008282 8.5e-20 100.1 86 58.1
PGR102G2188 Punica granatum HOM05D006634 ORTHO05D008282 8.5e-20 100.1 86 58.1
Glyma.11G146700 Glycine max HOM05D006634 ORTHO05D008282 1.1e-19 99.8 86 59.3
Glyma.12G067600 Glycine max HOM05D006634 ORTHO05D008282 1.1e-19 99.8 85 58.8
Gohir.D05G102700 Gossypium hirsutum HOM05D006634 ORTHO05D008282 1.1e-19 99.8 86 61.6
Gohir.A05G103000 Gossypium hirsutum HOM05D006634 ORTHO05D008282 1.5e-19 99.4 86 59.3
Lalb_Chr19g0137281 Lupinus albus HOM05D006634 ORTHO05D008282 1.5e-19 99.4 86 55.8
Medtr4g459450 Medicago truncatula HOM05D006634 ORTHO05D008282 1.9e-19 99.0 86 59.3
arahy.Tifrunner.gnm1.ann1.8AEA4E Arachis hypogaea HOM05D006634 ORTHO05D008282 5.5e-19 97.4 91 54.9
arahy.Tifrunner.gnm1.ann1.RYN47D Arachis hypogaea HOM05D006634 ORTHO05D008282 5.5e-19 97.4 86 57.0
Duzib168G0710 Durio zibethinus HOM05D006634 ORTHO05D008282 5.5e-19 97.4 86 59.3
CSS0031934 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 7.2e-19 97.1 86 59.3
Thecc.09G340600 Theobroma cacao HOM05D006634 ORTHO05D008282 7.2e-19 97.1 80 61.2
Sed0017465 Sechium edule HOM05D006634 ORTHO05D008282 1.6e-18 95.9 86 53.5
Lj3g0007397 Lotus japonicus HOM05D006634 ORTHO05D008282 2.1e-18 95.5 86 57.0
Oeu002870.2 Olea europaea HOM05D006634 ORTHO05D008282 2.7e-18 95.1 88 55.7
CDE06G1545 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 3.6e-18 94.7 86 61.6
Duzib150G1350 Durio zibethinus HOM05D006634 ORTHO05D008282 4.7e-18 94.4 86 57.0
Nn2g10789 Nelumbo nucifera HOM05D006634 ORTHO05D008282 4.7e-18 94.4 86 59.3
Phvul.011G079100 Phaseolus vulgaris HOM05D006634 ORTHO05D008282 6.1e-18 94.0 86 54.7
CARHR121380 Cardamine hirsuta HOM05D006634 ORTHO05D008282 8.0e-18 93.6 86 55.8
Eucgr.B02497 Eucalyptus grandis HOM05D006634 ORTHO05D008282 1.4e-17 92.8 86 54.7
Sp4g11250 Schrenkiella parvula HOM05D006634 ORTHO05D008282 2.3e-17 92.0 86 54.7
THA.LOC104800608 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 2.3e-17 92.0 86 57.0
unitig_21.g20301 Utricularia gibba HOM05D006634 ORTHO05D008282 2.3e-17 92.0 86 53.5
ClCG03G001830 Citrullus lanatus HOM05D006634 ORTHO05D008282 5.2e-17 90.9 86 52.3
CsaV3_1G033740 Cucumis sativus L. HOM05D006634 ORTHO05D008282 5.2e-17 90.9 87 52.9
Nitab4.5_0000650g0190 Nicotiana tabacum HOM05D006634 ORTHO05D008282 5.2e-17 90.9 86 55.8
Rhsim01G0216700 Rhododendron simsii HOM05D006634 ORTHO05D008282 5.2e-17 90.9 86 54.7
Actinidia03728 Actinidia chinensis HOM05D006634 ORTHO05D008282 6.8e-17 90.5 84 58.3
AT2G28430 Arabidopsis thaliana HOM05D006634 ORTHO05D008282 6.8e-17 90.5 86 52.3
AUR62039638 Chenopodium quinoa HOM05D006634 ORTHO05D008282 6.8e-17 90.5 86 59.3
Gohir.A08G197800 Gossypium hirsutum HOM05D006634 ORTHO05D008282 6.8e-17 90.5 86 55.8
Gorai.004G228800 Gossypium raimondii HOM05D006634 ORTHO05D008282 6.8e-17 90.5 86 55.8
Manes.11G145100 Manihot esculenta HOM05D006634 ORTHO05D008282 6.8e-17 90.5 82 54.9
AUR62024980 Chenopodium quinoa HOM05D006634 ORTHO05D008282 1.2e-16 89.7 86 59.3
Carub.0004s0938 Capsella rubella HOM05D006634 ORTHO05D008282 2.0e-16 89.0 86 53.5
vmacro14436 Vaccinium macrocarpon HOM05D006634 ORTHO05D008282 2.0e-16 89.0 86 55.8
DCAR_018812 Daucus carota HOM05D006634 ORTHO05D008282 2.6e-16 88.6 80 55.0
CDE07G0066 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 3.4e-16 88.2 82 58.5
MELO3C020691.2 Cucumis melo HOM05D006634 ORTHO05D008282 3.4e-16 88.2 87 51.7
AL4G21590 Arabidopsis lyrata HOM05D006634 ORTHO05D008282 5.7e-16 87.4 86 52.3
Aa31LG5G7790 Aethionema arabicum HOM05D006634 ORTHO05D008282 9.8e-16 86.7 86 52.3
Gohir.D08G215200 Gossypium hirsutum HOM05D006634 ORTHO05D008282 9.8e-16 86.7 86 54.7
BolC4t23789H Brassica oleracea HOM05D006634 ORTHO05D008282 1.7e-15 85.9 86 50.0
BcaNung07072 Brassica carinata HOM05D006634 ORTHO05D008282 2.2e-15 85.5 86 48.8
Aqoxy2G01632 Aquilegia oxysepala HOM05D006634 ORTHO05D008282 2.8e-15 85.1 85 49.4
BraA07t29605Z Brassica rapa HOM05D006634 ORTHO05D008282 2.8e-15 85.1 86 50.0
Thhalv10017488m.g Eutrema salsugineum HOM05D006634 ORTHO05D008282 2.8e-15 85.1 87 52.9
A07p19000 Brassica napus HOM05D006634 ORTHO05D008282 3.7e-15 84.7 86 50.0
Sopen11g028130 Solanum pennellii HOM05D006634 ORTHO05D008282 3.7e-15 84.7 86 50.0
Manes.04G021400 Manihot esculenta HOM05D006634 ORTHO05D008282 4.8e-15 84.3 82 52.4
Solyc11g069410.2 Solanum lycopersicum HOM05D006634 ORTHO05D008282 6.3e-15 84.0 86 50.0
THA.LOC104826362 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 6.3e-15 84.0 84 54.8
C04p22950 Brassica napus HOM05D006634 ORTHO05D008282 8.3e-15 83.6 87 49.4
BcaB06g28214 Brassica carinata HOM05D006634 ORTHO05D008282 1.1e-14 83.2 86 53.5
Sabra04G0142400 Salix brachista HOM05D006634 ORTHO05D008282 1.1e-14 83.2 82 53.7
Lalb_Chr03g0027351 Lupinus albus HOM05D006634 ORTHO05D008282 1.4e-14 82.8 81 51.9
Peaxi162Scf00270g00818 Petunia axillaris HOM05D006634 ORTHO05D008282 4.1e-14 81.3 87 52.9
Potri.004G210800 Populus trichocarpa HOM05D006634 ORTHO05D008282 4.1e-14 81.3 82 53.7
Cpa.g.sc216.10 Carica papaya HOM05D006634 ORTHO05D008282 5.4e-14 80.9 75 54.7
HanXRQChr02g0031651 Helianthus annuus HOM05D006634 ORTHO05D008282 7.0e-14 80.5 86 51.2
ECA238G2380 Erigeron canadensis HOM05D006634 ORTHO05D008282 1.2e-13 79.7 86 47.7
BolC4t27285H Brassica oleracea HOM05D006634 ORTHO05D008282 5.9e-13 77.4 82 46.3
Lsat_1_v5_gn_2_98520 Lactuca sativa HOM05D006634 ORTHO05D008282 5.9e-13 77.4 85 48.2
Zm00001eb221580 Zea mays HOM05D006634 ORTHO05D008282 7.7e-13 77.0 86 48.8
ECA248G3376 Erigeron canadensis HOM05D006634 ORTHO05D008282 1.0e-12 76.6 86 46.5
HanXRQChr14g0452861 Helianthus annuus HOM05D006634 ORTHO05D008282 1.0e-12 76.6 82 50.0
QL01p022236 Quercus lobata HOM05D006634 ORTHO05D008282 5.0e-12 74.3 174 34.5
BraA04t17721Z Brassica rapa HOM05D006634 ORTHO05D008282 6.6e-12 73.9 82 43.9
Zm00001eb045570 Zea mays HOM05D006634 ORTHO05D008282 8.6e-12 73.6 86 47.7
Os10g0481400 Oryza sativa ssp. japonica HOM05D006634 ORTHO05D008282 3.3e-11 71.6 90 46.7
Actinidia25419 Actinidia chinensis HOM05D006634 ORTHO05D008282 4.2e-11 71.2 74 48.6
Cc01_g11130 Coffea canephora HOM05D006634 ORTHO05D008282 4.2e-11 71.2 64 53.1
SalBow3G3864 Salvia bowleyana HOM05D006634 ORTHO05D008282 4.0e-09 64.7 86 50.0
Sed0015282 Sechium edule HOM05D006634 ORTHO05D008282 1.2e-08 63.2 86 39.5
Pp3c7_7440 Physcomitrium patens HOM05D006634 ORTHO05D008282 1.5e-08 62.8 91 40.7
MBI10_g13399_MAGBIO Magnolia biondii HOM05D006634 ORTHO05D008282 3.7e-07 58.2 64 50.0
Haze_23828 Corylus avellana HOM05D006634 ORTHO05D008282 1.4e-06 56.2 45 64.4


User provided reference genes

Program Settings