Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.8e-219 765.0 385 100.0
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 3.9e-88 329.3 183 95.1
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.6e-86 323.9 188 93.6
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.4e-84 316.2 201 87.6
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 7.3e-79 298.5 183 87.4
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 2.3e-56 223.8 189 71.4
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 1.4e-53 214.5 189 67.2
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 1.8e-53 214.2 189 67.7
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 4.2e-50 203.0 183 64.5
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 7.9e-49 198.7 185 67.0
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 4.3e-47 193.0 188 60.6
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 3.7e-46 189.9 189 61.4
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 6.3e-46 189.1 186 59.7
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 6.3e-46 189.1 188 61.7
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 8.2e-46 188.7 186 59.1
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 1.8e-45 187.6 190 58.9
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 3.1e-45 186.8 189 57.1
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 3.4e-44 183.3 191 61.3
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 1.0e-43 181.8 190 61.1
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 1.3e-43 181.4 189 59.8
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.3e-43 181.4 189 59.3
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 2.9e-43 180.3 186 60.8
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.4e-42 177.9 189 57.1
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 5.5e-42 176.0 188 57.4
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 7.2e-42 175.6 188 59.0
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 7.2e-42 175.6 189 57.7
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 4.6e-41 172.9 175 60.0
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 4.6e-41 172.9 188 56.9
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 4.6e-41 172.9 188 56.9
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 4.6e-41 172.9 188 56.9
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 1.4e-40 171.4 180 60.0
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 1.8e-40 171.0 188 60.1
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 1.8e-40 171.0 190 56.3
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 2.3e-40 170.6 189 56.1
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 6.7e-40 169.1 191 55.0
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 1.5e-39 167.9 189 56.1
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 2.5e-39 167.2 188 54.8
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 4.3e-39 166.4 188 56.4
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 2.2e-38 164.1 189 56.1
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 2.2e-38 164.1 193 54.9
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 3.7e-38 163.3 189 56.6
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 3.7e-38 163.3 185 55.7
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 6.3e-38 162.5 189 53.4
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 3.1e-37 160.2 189 54.0
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 5.3e-37 159.5 189 53.4
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 2.6e-36 157.1 187 53.5
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 2.6e-36 157.1 185 53.0
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 5.9e-36 156.0 192 52.6
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 5.9e-36 156.0 181 54.7
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 7.7e-36 155.6 179 57.0
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 7.7e-36 155.6 184 52.2
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 5.0e-35 152.9 189 51.9
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 6.5e-35 152.5 181 55.2
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 1.4e-34 151.4 189 53.4
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 2.5e-34 150.6 180 52.8
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 2.5e-34 150.6 185 50.8
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 3.2e-34 150.2 190 53.7
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 4.2e-34 149.8 190 51.6
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 5.5e-34 149.4 190 52.1
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 5.5e-34 149.4 191 53.9
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 9.4e-34 148.7 186 51.1
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 1.2e-33 148.3 188 52.1
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 3.6e-33 146.7 187 50.8
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 3.6e-33 146.7 193 51.3
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 1.0e-32 145.2 182 53.8
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 1.0e-32 145.2 187 50.3
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 1.0e-32 145.2 190 52.1
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 1.4e-32 144.8 192 51.6
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 1.8e-32 144.4 190 51.6
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 3.9e-32 143.3 186 48.9
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 1.5e-31 141.4 188 50.0
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 2.0e-31 141.0 185 50.3
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 4.4e-31 139.8 186 48.4
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 2.2e-30 137.5 186 50.0
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.8e-30 137.1 75 93.3
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 6.3e-30 136.0 188 50.0
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 8.2e-30 135.6 189 48.7
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 1.1e-29 135.2 182 49.5
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 4.1e-29 133.3 191 48.7
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 6.9e-29 132.5 187 50.8
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 9.1e-29 132.1 185 47.6
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 1.5e-28 131.3 189 47.6
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 2.6e-28 130.6 187 48.7
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.6e-28 130.6 171 56.7
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 2.6e-28 130.6 191 47.1
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 1.0e-27 128.6 188 48.9
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 1.3e-27 128.3 200 47.0
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.3e-27 128.3 201 48.3
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.7e-27 127.9 178 50.0
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.2e-27 127.5 178 50.0
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 2.9e-27 127.1 184 46.7
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.9e-27 127.1 171 56.1
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 2.9e-27 127.1 182 46.2
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.9e-26 124.4 184 44.6
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 7.2e-26 122.5 171 55.0
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 8.0e-25 119.0 190 44.7
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.8e-24 117.9 188 45.2
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 2.3e-24 117.5 185 41.1
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 3.9e-24 116.7 193 43.5
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 8.8e-24 115.5 183 43.2
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 3.3e-23 113.6 172 44.2
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.4e-23 113.2 177 46.9
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 9.7e-23 112.1 100 64.0
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 9.7e-23 112.1 177 46.3
FAN25G3037 Fragaria x ananassa HOM05D031121 ORTHO05D035843 1.3e-22 111.7 122 50.0
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 2.8e-22 110.5 205 44.9
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 2.4e-21 107.5 184 42.4
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 9.1e-21 105.5 177 40.7
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 2.0e-20 104.4 187 43.3
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 7.7e-20 102.4 151 44.4
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.0e-19 102.1 177 45.2
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 1.7e-19 101.3 188 42.6
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 1.7e-19 101.3 142 50.0
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 2.9e-19 100.5 185 41.6
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 2.9e-19 100.5 106 58.5
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 6.5e-19 99.4 183 41.5
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 6.5e-19 99.4 183 41.5
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 6.5e-19 99.4 183 41.5
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 8.5e-19 99.0 86 61.6
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 2.5e-18 97.4 231 36.4
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.5e-18 96.3 177 44.1
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 9.4e-18 95.5 165 41.2
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 2.1e-17 94.4 165 41.8
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 5.2e-16 89.7 77 61.0
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 5.7e-15 86.3 150 42.0
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 1.3e-14 85.1 132 45.5
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 6.3e-14 82.8 149 40.9
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 7.0e-13 79.3 190 37.9
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 1.7e-11 74.7 171 35.7
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.7e-11 74.7 174 40.2
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 2.9e-11 73.9 169 37.3
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 7.2e-10 69.3 139 38.8
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 8.8e-08 62.4 183 35.5
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 1.2e-07 62.0 139 36.7
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 2.0e-07 61.2 65 55.4
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 2.0e-07 61.2 178 27.5
FAN16G1507 Fragaria x ananassa HOM05D031121 ORTHO05D035843 2.6e-07 60.8 139 33.8
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 2.6e-07 60.8 100 41.0
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 3.4e-07 60.5 147 35.4
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 3.4e-07 60.5 147 36.7
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 1.3e-06 58.5 55 56.4


User provided reference genes

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