Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 0.0e+00 1407.5 732 100.0
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 0.0e+00 1358.2 732 97.0
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 0.0e+00 1352.4 738 96.1
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 0.0e+00 1342.4 738 95.5
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 0.0e+00 1327.8 738 94.4
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 0.0e+00 1176.8 745 84.8
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 1.3e-254 883.2 743 66.2
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 6.6e-254 880.9 749 65.0
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 9.8e-242 840.5 749 63.8
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 2.6e-226 789.3 752 59.0
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.7e-214 750.0 749 57.1
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 9.0e-211 737.6 752 56.1
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 5.8e-202 708.4 755 53.8
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 1.6e-199 700.3 748 55.1
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 1.8e-198 696.8 750 54.1
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 7.4e-197 691.4 760 53.2
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 3.7e-196 689.1 757 53.6
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 9.0e-195 684.5 763 53.7
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 6.5e-193 678.3 744 53.1
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 8.7e-190 667.9 754 53.7
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 7.7e-186 654.8 754 52.0
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 1.1e-184 651.0 759 51.8
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 7.2e-184 648.3 752 51.5
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 4.3e-181 639.0 749 50.2
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 1.7e-180 637.1 659 55.7
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.1e-179 634.4 751 50.1
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 1.1e-179 634.4 750 51.3
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 3.1e-179 632.9 749 49.9
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 9.1e-179 631.3 694 53.9
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 9.1e-179 631.3 715 52.3
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.5e-178 630.6 736 49.7
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 4.5e-178 629.0 731 51.7
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 1.0e-177 627.9 694 53.6
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 1.7e-177 627.1 730 51.9
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 1.4e-176 624.0 735 49.5
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 1.2e-175 620.9 687 51.7
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 2.1e-175 620.2 729 51.2
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 2.1e-175 620.2 750 49.7
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 1.8e-174 617.1 736 49.2
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.8e-174 617.1 745 49.1
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 5.9e-170 602.1 729 49.5
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 1.7e-169 600.5 741 47.9
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 1.9e-168 597.0 699 50.8
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 9.4e-168 594.7 688 50.4
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 1.8e-166 590.5 738 49.1
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 4.0e-158 562.8 731 49.0
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 3.4e-157 559.7 744 46.0
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 3.1e-155 553.1 744 45.4
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 5.3e-155 552.4 790 45.8
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 4.0e-150 536.2 745 44.4
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 6.8e-150 535.4 697 45.9
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 5.7e-149 532.3 765 45.2
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 6.3e-148 528.9 748 44.8
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.0e-145 521.5 790 44.3
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.0e-145 521.5 790 44.3
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 2.3e-145 520.4 749 44.3
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 9.5e-144 515.0 748 44.5
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 2.8e-143 513.5 741 43.6
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 3.6e-143 513.1 747 45.0
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 3.4e-141 506.5 722 44.9
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.3e-140 504.6 677 46.5
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 4.9e-140 502.7 730 43.7
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 2.4e-139 500.4 797 42.3
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 4.3e-136 489.6 743 42.7
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 1.4e-134 484.6 752 42.7
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 1.4e-131 474.6 748 41.3
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 2.4e-131 473.8 845 40.8
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 1.9e-128 464.2 754 41.5
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 4.7e-127 459.5 600 46.2
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 8.9e-126 455.3 744 41.4
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.0e-121 441.8 546 50.5
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 3.9e-121 439.9 742 40.2
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 5.6e-120 436.0 730 41.6
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 2.3e-118 430.6 706 41.1
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 3.8e-108 396.7 332 64.2
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 3.9e-105 386.7 301 67.8
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 9.6e-104 382.1 730 39.3
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 1.7e-97 361.3 482 47.9
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 2.1e-95 354.4 727 36.5
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 3.1e-86 323.9 376 52.4
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 1.3e-84 318.5 479 44.9
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 1.1e-83 315.5 240 69.2
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 2.7e-82 310.8 560 38.4
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 9.3e-75 285.8 326 49.4
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 1.1e-72 278.9 263 55.1
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 7.0e-54 216.5 325 41.8
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 3.5e-53 214.2 245 47.3
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 7.7e-45 186.4 157 64.3
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 1.6e-42 178.7 158 60.8
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 1.4e-41 175.6 320 41.2
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 4.1e-38 164.1 188 49.5
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 8.3e-31 139.8 98 69.4
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 4.0e-25 120.9 208 37.0
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 3.3e-19 101.3 155 40.0
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 3.1e-17 94.7 80 61.2
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 1.5e-16 92.4 84 51.2
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 2.9e-15 88.2 122 45.1
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 6.2e-10 70.5 242 26.0
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 2.2e-07 62.0 137 31.4
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 8.3e-07 60.1 71 46.5


User provided reference genes

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