Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1956 Fragaria x ananassa HOM05D007641 ORTHO05D007630 0.0e+00 1769.6 909 100.0
FvH4_3g40550 Fragaria vesca HOM05D007641 ORTHO05D007630 0.0e+00 1420.2 721 99.0
FAN25G3378 Fragaria x ananassa HOM05D007641 ORTHO05D007630 0.0e+00 1401.0 772 93.5
FAN16G1217 Fragaria x ananassa HOM05D007641 ORTHO05D007630 0.0e+00 1363.2 722 95.4
RcHm_v2.0_Chr5g0073231 Rosa chinensis HOM05D007641 ORTHO05D007630 0.0e+00 1216.1 803 80.0
Prupe.6G040800 Prunus persica HOM05D007641 ORTHO05D007630 1.5e-159 567.8 795 46.7
FAN21G1070 Fragaria x ananassa HOM05D007641 ORTHO05D007630 7.6e-151 538.9 297 93.3
QL01p024477 Quercus lobata HOM05D007641 ORTHO05D007630 4.2e-141 506.5 829 43.4
Dinv28733 Davidia involucrata HOM05D007641 ORTHO05D007630 4.8e-105 386.7 821 37.0
CiPaw.13G063300 Carya illinoinensis HOM05D007641 ORTHO05D007630 4.1e-104 383.6 760 37.8
Atru.chr10.2293 Acer truncatum HOM05D007641 ORTHO05D007630 2.5e-93 347.8 803 37.0
Potri.013G157800 Populus trichocarpa HOM05D007641 ORTHO05D007630 7.2e-85 319.7 805 33.3
CANSAT54G2173 Cannabis sativa HOM05D007641 ORTHO05D007630 1.1e-80 305.8 788 34.5
Haze_24474 Corylus avellana HOM05D007641 ORTHO05D007630 5.4e-80 303.5 600 38.3
Sabra13G0126700 Salix brachista HOM05D007641 ORTHO05D002352 7.3e-77 293.1 870 32.4
Thecc.09G364100 Theobroma cacao HOM05D007641 ORTHO05D007630 2.3e-75 288.1 831 33.9
Actinidia34497 Actinidia chinensis HOM05D007641 ORTHO05D007630 1.3e-73 282.3 822 31.9
Manes.02G212232 Manihot esculenta HOM05D007641 ORTHO05D007630 1.2e-63 249.2 719 31.6
MD11G1053300 Malus domestica HOM05D007641 ORTHO05D007630 2.7e-63 248.1 302 54.3
TWI79G1607 Tripterygium wilfordii HOM05D007641 ORTHO05D007630 2.8e-60 238.0 722 32.1
Duzib168G1492 Durio zibethinus HOM05D007641 ORTHO05D007630 1.7e-57 228.8 844 31.6
Glyma.18G052000 Glycine max HOM05D007641 ORTHO05D007630 1.0e-54 219.5 827 30.4
MELO3C019578.2 Cucumis melo HOM05D007641 ORTHO05D007630 6.6e-54 216.9 818 32.0
Sed0007856 Sechium edule HOM05D007641 ORTHO05D007630 3.3e-53 214.5 823 30.3
Phvul.006G079400 Phaseolus vulgaris HOM05D007641 ORTHO05D007630 2.1e-52 211.8 821 29.8
ClCG02G019020 Citrullus lanatus HOM05D007641 ORTHO05D007630 3.6e-52 211.1 829 29.6
Nn2g10289 Nelumbo nucifera HOM05D007641 ORTHO05D007630 1.2e-47 196.1 858 28.6
vmacro14640 Vaccinium macrocarpon HOM05D007641 ORTHO05D007630 4.0e-43 181.0 700 29.3
Gohir.A08G000032 Gossypium hirsutum HOM05D007641 ORTHO05D007630 5.3e-43 180.6 793 30.5
Lalb_Chr18g0054201 Lupinus albus HOM05D007641 ORTHO05D007630 5.3e-43 180.6 763 29.2
CsaV3_6G013130 Cucumis sativus L. HOM05D007641 ORTHO05D007630 4.4e-42 177.6 808 29.1
VMungo0540G0343 Vigna mungo HOM05D007641 ORTHO05D007630 7.6e-42 176.8 843 28.6
Lj6g0005873 Lotus japonicus HOM05D007641 ORTHO05D007630 1.3e-41 176.0 799 27.3
TPR.G13882 Trifolium pratense HOM05D007641 ORTHO05D007630 2.7e-39 168.3 817 28.8
Ciclev10004023m.g Citrus clementina HOM05D007641 ORTHO05D007630 3.5e-39 167.9 377 33.7
Psat5g147960 Pisum sativum HOM05D007641 ORTHO05D007630 1.6e-36 159.1 828 28.3
TAR636G3352 Trochodendron aralioides HOM05D007641 ORTHO05D007630 6.2e-36 157.1 345 35.4
Gorai.004G000600 Gossypium raimondii HOM05D007641 ORTHO05D007630 3.1e-35 154.8 782 27.0
Medtr3g467390 Medicago truncatula HOM05D007641 ORTHO05D007630 1.2e-34 152.9 705 28.7
Aqoxy1G01263 Aquilegia oxysepala HOM05D007641 ORTHO05D007630 2.0e-34 152.1 670 28.1
Rhsim01G0243500 Rhododendron simsii HOM05D007641 ORTHO05D007630 3.8e-33 147.9 691 27.1
arahy.Tifrunner.gnm1.ann1.4PHV2I Arachis hypogaea HOM05D007641 ORTHO05D007630 1.9e-32 145.6 811 27.3
HanXRQChr08g0230341 Helianthus annuus HOM05D007641 ORTHO05D007630 2.4e-32 145.2 443 30.0
Migut.D00817 Erythranthe guttata HOM05D007641 ORTHO05D007630 9.3e-32 143.3 450 31.6
Hma1.2p1_0119F.1_g056956 Hydrangea macrophylla HOM05D007641 ORTHO05D007630 2.1e-31 142.1 515 28.5
Gohir.D12G000401 Gossypium hirsutum HOM05D007641 ORTHO05D007630 2.7e-31 141.7 716 29.1
Cpa.g.sc2.293 Carica papaya HOM05D007641 ORTHO05D007630 6.0e-31 140.6 343 35.0
AL4G25360 Arabidopsis lyrata HOM05D001940 ORTHO05D007630 1.8e-30 139.0 527 28.3
AT2G30480 Arabidopsis thaliana HOM05D001940 ORTHO05D007630 1.8e-30 139.0 510 29.4
COL.COLO4_11217 Corchorus olitorius HOM05D007641 ORTHO05D007630 3.0e-30 138.3 689 26.9
Sp4g13010 Schrenkiella parvula HOM05D001940 ORTHO05D007630 3.0e-30 138.3 552 28.1
Gohir.D08G007350 Gossypium hirsutum HOM05D007641 ORTHO05D007630 5.1e-30 137.5 782 26.3
GSVIVG01024555001 Vitis vinifera HOM05D007641 ORTHO05D007630 4.3e-29 134.4 180 45.0
PSO170G4823 Papaver somniferum HOM05D007641 ORTHO05D007630 4.8e-28 131.0 983 25.2
Sc23g0005090 Simmondsia chinensis HOM05D007641 ORTHO05D007630 1.5e-26 125.9 694 26.4
arahy.Tifrunner.gnm1.ann1.F8RHVN Arachis hypogaea HOM05D007641 ORTHO05D007630 3.8e-25 121.3 649 27.9
Peaxi162Scf00605g00515 Petunia axillaris HOM05D014625 ORTHO05D007630 6.5e-25 120.6 587 27.3
Carub.0004s1164 Capsella rubella HOM05D001940 ORTHO05D007630 1.4e-24 119.4 549 27.5
MD11G1053200 Malus domestica HOM05D007641 ORTHO05D007630 5.5e-24 117.5 139 47.5
MBI15_g36478_MAGBIO Magnolia biondii HOM05D007641 ORTHO05D007630 7.1e-24 117.1 710 26.1
BcaB02g10326 Brassica carinata HOM05D001940 ORTHO05D007630 1.2e-23 116.3 554 28.3
BcaC02g11137 Brassica carinata HOM05D001940 ORTHO05D007630 4.6e-23 114.4 482 28.0
ECA247G3209 Erigeron canadensis HOM05D007641 ORTHO05D007630 1.8e-22 112.5 663 25.6
PSO017G1347 Papaver somniferum HOM05D007641 ORTHO05D007630 2.3e-22 112.1 355 29.9
THA.LOC104815825 Tarenaya hassleriana HOM05D001940 ORTHO05D007630 2.3e-22 112.1 458 26.2
Thhalv10017756m.g Eutrema salsugineum HOM05D001940 ORTHO05D007630 3.9e-22 111.3 430 27.4
Gohir.1Z049529 Gossypium hirsutum HOM05D007641 ORTHO05D007630 2.5e-21 108.6 425 29.2
Lsat_1_v5_gn_9_13760 Lactuca sativa HOM05D007641 ORTHO05D007630 1.3e-20 106.3 295 30.5
Gorai.012G000300 Gossypium raimondii HOM05D007641 ORTHO05D007630 1.4e-19 102.8 556 27.3
SGA_v2.0_scaffold20G09288 Striga asiatica HOM05D007641 ORTHO05D007630 1.4e-19 102.8 404 30.0
Nitab4.5_0001868g0030 Nicotiana tabacum HOM05D014625 ORTHO05D007630 4.5e-18 97.8 246 35.0
Gorai.002G184200 Gossypium raimondii HOM05D007641 ORTHO05D007630 5.8e-18 97.4 163 39.9
Sopen09g001120 Solanum pennellii HOM05D014625 ORTHO05D007630 7.6e-18 97.1 843 24.4
A05p14980 Brassica napus HOM05D001940 ORTHO05D007630 1.3e-17 96.3 545 27.2
Solyc09g005140.2 Solanum lycopersicum HOM05D014625 ORTHO05D007630 1.3e-17 96.3 844 24.6
AUR62016518 Chenopodium quinoa HOM05D029401 ORTHO05D007630 1.7e-17 95.9 324 30.9
Oeu064683.1 Olea europaea HOM05D007641 ORTHO05D007630 3.8e-17 94.7 741 24.7
Hund18459 Selenicereus undatus HOM05D029401 ORTHO05D007630 2.3e-14 85.5 817 24.4
Nitab4.5_0000002g0280 Nicotiana tabacum HOM05D014625 ORTHO05D007630 3.3e-13 81.6 571 24.7
TAR633G1590 Trochodendron aralioides HOM05D007641 ORTHO05D007630 4.3e-13 81.3 473 28.5
Glyma.11G198150 Glycine max HOM05D007641 ORTHO05D007630 5.7e-13 80.9 177 33.9
CARHR123930 Cardamine hirsuta HOM05D001940 ORTHO05D007630 1.3e-12 79.7 220 29.5
Ca_15060_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 1.3e-12 79.7 541 26.4
AUR62001158 Chenopodium quinoa HOM05D029401 ORTHO05D007630 4.8e-12 77.8 805 24.0
C04p20070 Brassica napus HOM05D001940 ORTHO05D007630 8.2e-12 77.0 560 24.3
Ciclev10001550m.g Citrus clementina HOM05D007641 ORTHO05D007630 1.4e-11 76.3 360 30.0
Ah.08g218910 Amaranthus hybridus HOM05D000020 ORTHO05D002192 4.1e-11 74.7 264 31.4
ATR1127G234 Amborella trichopoda HOM05D007641 ORTHO05D007630 1.5e-10 72.8 256 29.7
BolC4t23545H Brassica oleracea HOM05D001940 ORTHO05D007630 4.5e-10 71.2 320 27.5
PGR102G3245 Punica granatum HOM05D007641 ORTHO05D007630 1.7e-09 69.3 304 27.0
DCAR_018642 Daucus carota HOM05D007641 ORTHO05D007630 2.2e-09 68.9 746 24.7
Ca_15061_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 1.4e-08 66.2 118 39.8
Os01g0167700 Oryza sativa ssp. japonica HOM05D052079 ORTHO05D007630 3.2e-08 65.1 461 22.6
PSO384G0550 Papaver somniferum HOM05D007641 ORTHO05D007630 7.2e-08 63.9 78 46.2
Glyma.11G198000 Glycine max HOM05D007641 ORTHO05D007630 2.7e-07 62.0 133 33.8
BraA05t20424Z Brassica rapa HOM05D001940 ORTHO05D007630 4.6e-07 61.2 290 25.9
Lj2A1102G26 Lonicera japonica HOM05D007641 ORTHO05D007630 1.0e-06 60.1 343 26.8
CSS0002773 Camellia sinensis var. sinensis HOM05D024992 ORTHO05D022110 1.4e-06 59.7 66 54.5
TAR636G0755 Trochodendron aralioides HOM05D007641 ORTHO05D007630 2.3e-06 58.9 177 35.6
Gohir.D01G148301 Gossypium hirsutum HOM05D007641 ORTHO05D007630 3.0e-06 58.5 163 30.7


User provided reference genes

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