Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.7e-165 583.9 296 100.0
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.0e-125 451.8 239 96.7
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 1.1e-122 443.7 236 95.3
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.2e-122 442.2 241 94.2
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 1.7e-120 436.4 236 95.8
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 6.2e-118 427.9 236 92.4
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 5.2e-117 424.9 236 92.4
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 5.0e-112 408.3 233 86.7
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-111 406.8 236 87.3
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 2.2e-107 392.9 236 84.3
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.1e-106 387.9 202 96.5
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.2e-105 387.1 229 84.3
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 7.8e-105 384.4 228 85.5
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 2.1e-102 376.3 228 82.5
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 2.1e-102 376.3 228 82.9
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 2.0e-100 369.8 236 78.8
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.6e-100 369.4 232 80.6
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 3.4e-100 369.0 231 80.1
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 5.8e-100 368.2 236 78.8
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 4.9e-99 365.2 227 81.5
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 6.4e-99 364.8 233 78.5
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 2.4e-98 362.8 228 78.1
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.2e-98 362.5 236 79.7
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 5.4e-98 361.7 228 79.8
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 5.4e-98 361.7 234 76.1
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 5.4e-98 361.7 239 79.5
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 7.1e-98 361.3 227 79.7
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 3.0e-96 355.9 231 76.6
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 3.9e-96 355.5 227 78.9
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 6.6e-96 354.8 227 78.0
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 6.6e-96 354.8 231 76.6
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.5e-95 353.6 227 78.0
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.9e-95 353.2 231 75.8
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.6e-94 350.1 227 78.0
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.1e-94 349.7 230 74.8
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 3.6e-94 349.0 227 76.2
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 4.7e-94 348.6 227 77.1
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 6.2e-94 348.2 227 76.2
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.4e-93 347.1 227 76.2
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.4e-93 347.1 229 75.1
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.4e-93 347.1 228 76.8
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.8e-93 346.7 229 75.5
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 2.4e-93 346.3 255 67.8
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 3.1e-93 345.9 229 74.7
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 3.1e-93 345.9 228 74.1
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 3.1e-93 345.9 228 76.8
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.0e-93 345.5 224 76.3
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.2e-93 345.1 231 75.3
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 6.9e-93 344.7 230 74.3
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 8.9e-93 344.4 230 74.3
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.2e-92 344.0 224 75.4
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.2e-92 344.0 233 71.2
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.2e-92 344.0 227 77.5
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 1.5e-92 343.6 234 70.9
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 2.0e-92 343.2 233 71.7
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 2.0e-92 343.2 228 75.0
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 2.6e-92 342.8 233 71.7
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 3.4e-92 342.4 228 75.0
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 4.4e-92 342.0 232 73.7
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 4.4e-92 342.0 235 70.2
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 5.8e-92 341.7 227 76.2
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 7.6e-92 341.3 227 75.8
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 9.9e-92 340.9 228 75.0
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.7e-91 340.1 227 76.2
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.7e-91 340.1 229 74.7
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.7e-91 340.1 231 70.1
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 2.2e-91 339.7 228 74.6
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 2.2e-91 339.7 229 73.4
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 2.9e-91 339.3 209 81.3
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 4.9e-91 338.6 228 72.8
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 6.4e-91 338.2 232 70.7
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 8.4e-91 337.8 229 74.2
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 8.4e-91 337.8 258 66.3
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.4e-90 337.0 232 71.6
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.4e-90 336.3 231 74.9
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 4.2e-90 335.5 227 75.3
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 5.4e-90 335.1 232 70.3
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 5.4e-90 335.1 227 74.0
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 1.2e-89 334.0 233 70.0
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.2e-89 334.0 232 73.3
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 2.1e-89 333.2 227 73.1
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 2.7e-89 332.8 233 69.1
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.5e-89 332.4 232 69.0
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 6.0e-89 331.6 227 73.1
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 6.0e-89 331.6 229 73.4
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 6.0e-89 331.6 227 72.7
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 7.8e-89 331.3 227 72.2
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.7e-88 330.1 224 72.8
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.7e-88 330.1 227 73.1
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 2.3e-88 329.7 268 65.3
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 2.3e-88 329.7 227 72.2
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 3.0e-88 329.3 228 70.6
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 3.9e-88 328.9 223 72.6
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 5.1e-88 328.6 224 72.3
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.1e-87 327.4 228 70.2
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.9e-87 326.6 228 70.2
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 4.3e-87 325.5 218 77.5
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 5.6e-87 325.1 228 71.1
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 7.3e-87 324.7 227 71.4
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 9.6e-87 324.3 313 56.9
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 1.3e-86 323.9 224 70.1
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 3.6e-86 322.4 234 69.7
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 6.2e-86 321.6 228 69.3
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 8.1e-86 321.2 234 70.1
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.4e-85 320.5 228 69.7
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.4e-85 320.5 228 68.9
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.8e-85 320.1 228 68.9
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 2.4e-85 319.7 228 68.4
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 4.0e-85 318.9 228 69.3
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 4.0e-85 318.9 224 70.1
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 9.0e-85 317.8 228 68.4
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 2.0e-84 316.6 228 68.0
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 3.4e-84 315.8 228 68.0
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 7.6e-84 314.7 212 72.6
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 6.4e-83 311.6 228 67.5
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.1e-82 308.1 221 70.1
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.7e-81 306.2 221 69.7
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.3e-80 303.9 227 65.2
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 7.4e-79 298.1 196 75.5
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 6.2e-78 295.0 204 72.1
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.1e-77 294.3 192 76.6
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 4.0e-77 292.4 227 63.0
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 9.0e-77 291.2 223 66.8
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 9.0e-77 291.2 229 64.6
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 4.2e-74 282.3 221 62.9
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.6e-73 280.4 195 71.8
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.6e-73 280.4 227 62.6
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.0e-72 277.7 147 93.2
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.4e-69 266.5 178 74.7
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.5e-68 263.8 144 91.0
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.2e-67 260.0 238 58.8
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.6e-63 244.6 124 97.6
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 5.3e-61 238.8 182 68.1
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 4.5e-60 235.7 133 85.7
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 5.5e-58 228.8 220 54.1
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 9.3e-58 228.0 155 73.5
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 1.3e-56 224.2 221 50.7
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 6.7e-56 221.9 226 49.6
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 1.1e-53 214.5 228 49.1
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 1.2e-52 211.1 144 73.6
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 7.7e-52 208.4 119 84.0
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 2.8e-46 189.9 135 71.9
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 3.7e-46 189.5 140 68.6
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 4.5e-44 182.6 149 61.7
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 5.9e-44 182.2 146 63.7
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 5.0e-43 179.1 143 64.3
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 4.2e-42 176.0 126 72.2
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.6e-41 174.1 138 61.6
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 4.7e-41 172.6 142 58.5
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 4.5e-36 156.0 184 45.7
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 5.0e-35 152.5 88 84.1
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.9e-34 150.6 185 43.8
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 3.6e-33 146.4 85 82.4
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.4e-32 144.4 97 74.2
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 3.0e-32 143.3 109 67.0
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 3.0e-32 143.3 98 77.6
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 1.5e-31 141.0 114 62.3
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 5.7e-31 139.0 191 44.0
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.7e-30 137.5 102 68.6
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.7e-28 130.2 86 77.9
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 4.5e-28 129.4 86 75.6
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 7.7e-28 128.6 90 72.2
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-27 127.9 92 75.0
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 2.2e-27 127.1 82 76.8
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 2.2e-27 127.1 145 50.3
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 6.5e-27 125.6 85 71.8
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 8.5e-27 125.2 103 61.2
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.9e-26 124.0 96 62.5
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.2e-25 121.3 95 66.3
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 1.5e-23 114.4 77 74.0
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 5.7e-23 112.5 75 78.7
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 7.5e-23 112.1 134 49.3
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 1.4e-21 107.8 106 57.5
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.6e-17 94.4 63 73.0
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 2.3e-16 90.5 59 74.6
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 2.0e-15 87.4 51 84.3
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 2.8e-14 83.6 187 29.9
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 6.3e-14 82.4 60 70.0
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.4e-13 80.5 68 64.7
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 1.2e-12 78.2 219 26.9
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 2.5e-10 70.5 49 65.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 1.4e-08 64.7 67 50.7
FvH4_4g28330 Fragaria vesca HOM05D003866 ORTHO05D196461 6.4e-06 55.8 32 75.0


User provided reference genes

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