Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.6e-79 297.7 174 100.0
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.9e-74 282.7 174 95.4
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.5e-74 282.3 174 96.0
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.5e-74 282.3 174 95.4
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 5.5e-74 281.2 174 95.4
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 3.2e-66 255.4 178 86.5
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.3e-46 190.3 174 72.4
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 3.5e-44 182.2 174 69.5
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 5.5e-42 174.9 172 68.6
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.0e-28 129.8 125 69.6
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 3.5e-28 129.0 125 68.8
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 5.0e-27 125.2 124 66.1
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 6.5e-27 124.8 134 62.7
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.5e-26 122.9 125 65.6
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 2.5e-26 122.9 173 55.5
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 7.2e-26 121.3 169 53.3
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.8e-24 116.7 168 51.2
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 5.2e-24 115.2 174 50.0
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 1.5e-23 113.6 168 50.6
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 2.0e-23 113.2 172 53.5
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 2.0e-23 113.2 173 49.7
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 9.8e-23 110.9 134 59.7
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 6.3e-22 108.2 156 50.6
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 1.4e-21 107.1 181 51.4
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.4e-21 107.1 136 56.6
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 2.4e-21 106.3 175 49.1
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 2.4e-21 106.3 172 52.3
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.4e-21 106.3 136 54.4
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 4.1e-21 105.5 133 55.6
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 5.4e-21 105.1 171 53.8
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 5.4e-21 105.1 177 52.0
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 7.0e-21 104.8 172 52.3
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 9.2e-21 104.4 177 48.0
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 9.2e-21 104.4 137 56.9
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 9.2e-21 104.4 174 46.6
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 1.2e-20 104.0 133 59.4
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.6e-20 103.6 167 49.1
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 1.6e-20 103.6 178 47.2
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.0e-20 103.2 109 63.3
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 2.7e-20 102.8 126 61.1
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.7e-20 102.8 111 66.7
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 4.5e-20 102.1 178 47.8
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 7.8e-20 101.3 181 50.3
FvH4_3g42261 Fragaria vesca HOM05D019050 ORTHO05D035443 7.8e-20 101.3 199 49.7
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.0e-19 100.9 94 68.1
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.0e-19 100.9 94 68.1
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.0e-19 100.9 110 58.2
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.3e-19 100.5 127 58.3
FAN16G1216 Fragaria x ananassa HOM05D019050 ORTHO05D035374 1.3e-19 100.5 199 49.7
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 2.9e-19 99.4 171 50.9
FAN11G3625 Fragaria x ananassa HOM05D019050 ORTHO05D035443 8.6e-19 97.8 162 53.7
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 8.6e-19 97.8 120 57.5
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.5e-18 97.1 181 48.6
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.9e-18 96.7 134 51.5
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 7.3e-18 94.7 134 50.7
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 1.2e-17 94.0 103 62.1
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.2e-17 94.0 170 49.4
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.6e-17 93.6 130 56.2
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.6e-17 93.6 101 61.4
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.6e-17 93.6 171 45.0
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.6e-17 93.6 102 61.8
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 2.1e-17 93.2 171 45.6
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 3.6e-17 92.4 98 62.2
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 6.1e-17 91.7 169 46.2
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 8.0e-17 91.3 116 47.4
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 8.0e-17 91.3 177 51.4
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.0e-16 90.9 103 60.2
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.0e-16 90.9 170 48.2
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 1.0e-16 90.9 171 45.0
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 1.8e-16 90.1 115 60.0
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 2.3e-16 89.7 142 49.3
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 2.3e-16 89.7 171 43.3
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 4.0e-16 89.0 114 57.9
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 5.2e-16 88.6 108 63.0
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 5.2e-16 88.6 171 44.4
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 6.8e-16 88.2 128 53.9
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.8e-16 88.2 126 54.0
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 1.5e-15 87.0 107 59.8
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.5e-15 87.0 107 56.1
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 1.5e-15 87.0 102 61.8
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 1.5e-15 87.0 100 62.0
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 2.0e-15 86.7 169 45.6
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.6e-15 86.3 95 63.2
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.6e-15 86.3 184 46.7
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 3.4e-15 85.9 170 44.7
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 3.4e-15 85.9 143 49.0
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 5.8e-15 85.1 166 45.8
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 9.8e-15 84.3 109 58.7
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 1.3e-14 84.0 118 53.4
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 1.3e-14 84.0 118 53.4
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 1.3e-14 84.0 166 45.8
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 1.3e-14 84.0 128 51.6
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 2.2e-14 83.2 135 49.6
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.9e-14 82.8 170 45.3
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 2.9e-14 82.8 121 58.7
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 3.7e-14 82.4 181 47.0
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 3.7e-14 82.4 97 62.9
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 4.9e-14 82.0 86 66.3
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 4.9e-14 82.0 86 66.3
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 4.9e-14 82.0 119 56.3
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 8.3e-14 81.3 97 61.9
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.8e-13 80.1 149 45.0
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 1.8e-13 80.1 173 45.1
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 2.4e-13 79.7 114 57.0
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 4.1e-13 79.0 124 50.8
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 5.4e-13 78.6 104 55.8
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 5.4e-13 78.6 179 44.7
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 7.0e-13 78.2 114 52.6
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 7.0e-13 78.2 103 59.2
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 9.2e-13 77.8 172 44.2
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 9.2e-13 77.8 87 59.8
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 9.2e-13 77.8 87 59.8
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 9.2e-13 77.8 179 45.3
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 9.2e-13 77.8 86 62.8
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 1.6e-12 77.0 114 54.4
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 1.6e-12 77.0 172 44.2
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.6e-12 77.0 170 44.1
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.6e-12 77.0 97 59.8
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.6e-12 77.0 99 61.6
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.6e-12 77.0 105 55.2
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.0e-12 76.6 173 45.7
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 2.7e-12 76.3 172 43.6
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 3.5e-12 75.9 104 54.8
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 6.0e-12 75.1 166 43.4
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 7.8e-12 74.7 85 55.3
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.3e-11 73.9 107 54.2
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.7e-11 73.6 91 62.6
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 2.3e-11 73.2 172 42.4
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 5.0e-11 72.0 167 41.9
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 5.0e-11 72.0 105 56.2
FAN21G1050 Fragaria x ananassa HOM05D019050 ORTHO05D204215 5.0e-11 72.0 197 43.7
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 6.6e-11 71.6 210 38.1
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 6.6e-11 71.6 168 45.8
FAN25G0864 Fragaria x ananassa HOM05D019050 ORTHO05D035443 1.1e-10 70.9 161 45.3
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 1.5e-10 70.5 172 43.6
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.5e-10 70.5 97 58.8
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 1.9e-10 70.1 179 43.6
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 3.3e-10 69.3 98 55.1
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 4.3e-10 68.9 86 61.6
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 7.3e-10 68.2 92 53.3
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 7.3e-10 68.2 151 41.1
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 9.5e-10 67.8 98 54.1
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 9.5e-10 67.8 97 57.7
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 9.5e-10 67.8 113 50.4
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.8e-09 66.2 67 68.7
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 6.2e-09 65.1 176 42.0
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.8e-08 63.5 96 47.9
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.3e-08 63.2 71 63.4
Duzib268G0228 Durio zibethinus HOM05D004577 ORTHO05D005062 8.9e-08 61.2 105 45.7
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.5e-07 60.5 67 64.2
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.0e-07 60.1 67 56.7
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.4e-07 59.3 67 62.7


User provided reference genes

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