Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g16940 Fragaria vesca HOM05D008142 ORTHO05D009674 3.9e-87 324.7 159 100.0
FAN11G1471 Fragaria x ananassa HOM05D008142 ORTHO05D009674 3.9e-87 324.7 159 100.0
FAN16G2943 Fragaria x ananassa HOM05D008142 ORTHO05D009674 1.5e-86 322.8 159 99.4
FAN21G3515 Fragaria x ananassa HOM05D008142 ORTHO05D009674 1.4e-84 316.2 158 98.1
RcHm_v2.0_Chr5g0028181 Rosa chinensis HOM05D008142 ORTHO05D009674 5.2e-71 271.2 159 83.6
MD03G1255500 Malus domestica HOM05D008142 ORTHO05D009674 3.2e-36 155.6 167 58.7
Prupe.4G151600 Prunus persica HOM05D008142 ORTHO05D009674 1.3e-34 150.2 171 53.8
QL04p069987 Quercus lobata HOM05D008142 ORTHO05D009674 3.5e-27 125.6 158 51.3
QL04p069966 Quercus lobata HOM05D008142 ORTHO05D009674 2.7e-19 99.4 161 42.9
Nn3g20734 Nelumbo nucifera HOM05D008142 ORTHO05D009674 1.3e-18 97.1 165 41.2
Cfa019469 Carpinus fangiana HOM05D008142 ORTHO05D009674 8.7e-18 94.4 165 42.4
Eucgr.F03213 Eucalyptus grandis HOM05D008142 ORTHO05D009674 5.6e-17 91.7 156 41.0
Haze_08481 Corylus avellana HOM05D008142 ORTHO05D009674 6.2e-16 88.2 170 39.4
Dinv13326 Davidia involucrata HOM05D000230 ORTHO05D000176 1.8e-15 86.7 154 42.2
Nn4g26546 Nelumbo nucifera HOM05D008142 ORTHO05D009674 1.8e-15 86.7 162 38.9
Thecc.07G144200 Theobroma cacao HOM05D008142 ORTHO05D009674 9.0e-15 84.3 150 42.7
CSS0032813 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 1.5e-14 83.6 165 41.8
Gohir.A01G042900 Gossypium hirsutum HOM05D008142 ORTHO05D009674 9.9e-14 80.9 150 39.3
Gohir.D01G033400 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.3e-13 80.5 154 37.0
Gorai.002G040900 Gossypium raimondii HOM05D008142 ORTHO05D009674 1.3e-13 80.5 152 40.8
CSS0003990 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 2.2e-13 79.7 173 36.4
Thecc.07G144400 Theobroma cacao HOM05D008142 ORTHO05D009674 2.2e-13 79.7 149 38.9
Aqoxy1G01717 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 2.9e-13 79.3 176 38.1
Gohir.A01G042800 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.9e-13 79.3 154 37.0
Gohir.D01G033600 Gossypium hirsutum HOM05D008142 ORTHO05D009674 3.8e-13 79.0 150 37.3
Gorai.002G040500 Gossypium raimondii HOM05D008142 ORTHO05D009674 4.9e-13 78.6 154 37.0
Gorai.002G040600 Gossypium raimondii HOM05D008142 ORTHO05D009674 6.4e-13 78.2 150 38.7
Actinidia35170 Actinidia chinensis HOM05D008142 ORTHO05D009674 8.4e-13 77.8 154 38.3
TAR629G2490 Trochodendron aralioides HOM05D008142 ORTHO05D009674 8.4e-13 77.8 159 37.1
Gohir.D01G033500 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.1e-12 77.4 150 38.7
CSS0017983 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 1.9e-12 76.6 173 35.3
Gohir.D01G033700 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.9e-12 76.6 150 39.3
Potri.001G379400 Populus trichocarpa HOM05D008142 ORTHO05D009674 2.4e-12 76.3 164 39.6
Actinidia18850 Actinidia chinensis HOM05D008142 ORTHO05D009674 3.2e-12 75.9 155 39.4
Hma1.2p1_0280F.1_g112890 Hydrangea macrophylla HOM05D008142 ORTHO05D009674 3.2e-12 75.9 152 40.1
Gohir.A01G043000 Gossypium hirsutum HOM05D008142 ORTHO05D009674 4.2e-12 75.5 141 40.4
Gorai.002G040700 Gossypium raimondii HOM05D008142 ORTHO05D009674 7.1e-12 74.7 150 36.7
Dinv26679 Davidia involucrata HOM05D008142 ORTHO05D009674 1.6e-11 73.6 128 43.0
RhsimUnG0205200 Rhododendron simsii HOM05D008142 ORTHO05D009674 1.6e-11 73.6 163 36.2
Gohir.A01G043100 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.7e-11 72.8 150 37.3
Gorai.002G040800 Gossypium raimondii HOM05D008142 ORTHO05D009674 3.5e-11 72.4 150 36.7
COL.COLO4_17432 Corchorus olitorius HOM05D008142 ORTHO05D009674 4.6e-11 72.0 143 43.4
Gohir.A01G043200 Gossypium hirsutum HOM05D008142 ORTHO05D009674 7.9e-11 71.2 150 36.7
RhsimUnG0205300 Rhododendron simsii HOM05D008142 ORTHO05D009674 1.7e-10 70.1 163 36.2
Lj3g0014819 Lotus japonicus HOM05D012055 ORTHO05D014183 2.3e-10 69.7 156 32.1
Sabra16G0249900 Salix brachista HOM05D008142 ORTHO05D009674 2.3e-10 69.7 165 37.0
Ciclev10022628m.g Citrus clementina HOM05D008142 ORTHO05D009674 3.0e-10 69.3 146 39.0
TAR627G0610 Trochodendron aralioides HOM05D008142 ORTHO05D009674 3.0e-10 69.3 87 46.0
Phvul.005G061600 Phaseolus vulgaris HOM05D012055 ORTHO05D014183 1.9e-09 66.6 153 32.7
MD11G1276300 Malus domestica HOM05D015893 ORTHO05D019166 2.5e-09 66.2 161 36.0
Oeu001311.1 Olea europaea HOM05D008142 ORTHO05D009674 7.3e-09 64.7 159 33.3
Lalb_Chr25g0285461 Lupinus albus HOM05D012055 ORTHO05D014183 1.3e-08 63.9 105 38.1
MSTRG.6725 Avicennia marina HOM05D008142 ORTHO05D009674 2.1e-08 63.2 157 37.6
Prupe.4G151500 Prunus persica HOM05D015893 ORTHO05D019166 2.1e-08 63.2 156 35.3
Glyma.13G260401 Glycine max HOM05D010689 ORTHO05D012855 8.1e-08 61.2 137 36.5
MD03G1255600 Malus domestica HOM05D015893 ORTHO05D019166 1.1e-07 60.8 172 33.7
RcHm_v2.0_Chr5g0028161 Rosa chinensis HOM05D015893 ORTHO05D019166 2.4e-07 59.7 157 33.8
TAR627G0365 Trochodendron aralioides HOM05D008142 ORTHO05D009674 3.1e-07 59.3 166 34.9
MSTRG.15018 Avicennia marina HOM05D008142 ORTHO05D009674 4.0e-07 58.9 159 32.7
Nitab4.5_0004038g0010 Nicotiana tabacum HOM05D011950 ORTHO05D009674 4.0e-07 58.9 176 34.7
Glyma.15G247800 Glycine max HOM05D010689 ORTHO05D012855 5.3e-07 58.5 153 34.0
Glyma.13G260000 Glycine max HOM05D012055 ORTHO05D014183 6.9e-07 58.2 160 31.9
Oeu020029.1 Olea europaea HOM05D008142 ORTHO05D009674 1.2e-06 57.4 154 35.1
Ca_03397_v3 Cicer arietinum L. HOM05D012055 ORTHO05D014183 2.0e-06 56.6 146 30.8
Glyma.15G248000 Glycine max HOM05D012055 ORTHO05D014183 2.0e-06 56.6 165 31.5
Nitab4.5_0020402g0010 Nicotiana tabacum HOM05D011950 ORTHO05D009674 2.6e-06 56.2 176 35.2
FvH4_3g16930 Fragaria vesca HOM05D015893 ORTHO05D019166 3.4e-06 55.8 149 31.5
FAN11G0710 Fragaria x ananassa HOM05D015893 ORTHO05D019166 3.4e-06 55.8 149 31.5
FAN16G3477 Fragaria x ananassa HOM05D015893 ORTHO05D019166 3.4e-06 55.8 149 30.2
Gorai.002G040400 Gossypium raimondii HOM05D023069 ORTHO05D009674 3.4e-06 55.8 120 35.8
Glyma.15G247900 Glycine max HOM05D010689 ORTHO05D012855 4.5e-06 55.5 140 35.0
PGSC0003DMG400007050 Solanum tuberosum HOM05D011950 ORTHO05D009674 4.5e-06 55.5 172 32.0
COL.COLO4_17430 Corchorus olitorius HOM05D008142 ORTHO05D009674 5.8e-06 55.1 139 29.5
VMungo1080G1331 Vigna mungo HOM05D012055 ORTHO05D014183 5.8e-06 55.1 148 29.7
Gohir.D01G033300 Gossypium hirsutum HOM05D023069 ORTHO05D009674 7.6e-06 54.7 122 36.1


User provided reference genes

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