Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1445 Fragaria x ananassa HOM05D003883 ORTHO05D004605 1.4e-69 266.2 131 100.0
FvH4_3g25440 Fragaria vesca HOM05D003883 ORTHO05D004605 1.6e-46 189.5 94 100.0
FvH4_2g00580 Fragaria vesca HOM05D003883 ORTHO05D004605 2.4e-13 79.3 39 94.9
FAN06G0896 Fragaria x ananassa HOM05D003883 ORTHO05D004605 2.4e-13 79.3 39 94.9
FAN27G2158 Fragaria x ananassa HOM05D003883 ORTHO05D004605 5.3e-13 78.2 39 92.3
RcHm_v2.0_Chr6g0251031 Rosa chinensis HOM05D003883 ORTHO05D004605 5.3e-13 78.2 39 92.3
THA.LOC104815789 Tarenaya hassleriana HOM05D003883 ORTHO05D004605 6.9e-13 77.8 43 83.7
Thecc.04G023200 Theobroma cacao HOM05D003883 ORTHO05D004605 9.0e-13 77.4 39 89.7
Hund26941 Selenicereus undatus HOM05D003883 ORTHO05D004605 1.2e-12 77.0 39 89.7
Lalb_Chr02g0141881 Lupinus albus HOM05D003883 ORTHO05D004605 1.5e-12 76.6 39 89.7
VMungo0720G2352 Vigna mungo HOM05D003883 ORTHO05D004605 1.5e-12 76.6 39 89.7
Aa31LG9G11890 Aethionema arabicum HOM05D003883 ORTHO05D004605 2.0e-12 76.3 39 87.2
Cpa.g.sc21.99 Carica papaya HOM05D003883 ORTHO05D004605 2.6e-12 75.9 39 89.7
Eucgr.F02940 Eucalyptus grandis HOM05D003883 ORTHO05D004605 2.6e-12 75.9 39 89.7
FAN20G1119 Fragaria x ananassa HOM05D003883 ORTHO05D004605 2.6e-12 75.9 39 89.7
Potri.019G069000 Populus trichocarpa HOM05D003883 ORTHO05D004605 2.6e-12 75.9 39 87.2
TWI75G0838 Tripterygium wilfordii HOM05D003883 ORTHO05D004605 2.6e-12 75.9 39 89.7
CANSAT01G1230 Cannabis sativa HOM05D003883 ORTHO05D004605 3.4e-12 75.5 39 87.2
HanXRQChr12g0369281 Helianthus annuus HOM05D003883 ORTHO05D004605 3.4e-12 75.5 39 87.2
GSVIVG01011528001 Vitis vinifera HOM05D003883 ORTHO05D004605 3.4e-12 75.5 39 87.2
Dinv22125 Davidia involucrata HOM05D003883 ORTHO05D004605 4.5e-12 75.1 39 87.2
MSTRG.1604 Avicennia marina HOM05D003883 ORTHO05D004605 5.9e-12 74.7 48 79.2
AUR62038537 Chenopodium quinoa HOM05D003883 ORTHO05D004605 5.9e-12 74.7 39 87.2
CiPaw.03G013400 Carya illinoinensis HOM05D003883 ORTHO05D004605 7.6e-12 74.3 39 87.2
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 7.6e-12 74.3 39 84.6
Oeu028627.2 Olea europaea HOM05D003883 ORTHO05D004605 7.6e-12 74.3 39 84.6
Sabra19G0082500 Salix brachista HOM05D003883 ORTHO05D004605 7.6e-12 74.3 39 84.6
GSVIVG01037209001 Vitis vinifera HOM05D003883 ORTHO05D004605 7.6e-12 74.3 39 84.6
AT4G10110 Arabidopsis thaliana HOM05D003883 ORTHO05D004605 1.0e-11 73.9 39 84.6
BcaB01g01452 Brassica carinata HOM05D003883 ORTHO05D004605 1.0e-11 73.9 39 84.6
Thhalv10029015m.g Eutrema salsugineum HOM05D003883 ORTHO05D004605 1.0e-11 73.9 39 84.6
Hma1.2p1_1248F.1_g270250 Hydrangea macrophylla HOM05D003883 ORTHO05D004605 1.0e-11 73.9 39 84.6
Lj7P418T16 Lonicera japonica HOM05D003883 ORTHO05D004605 1.0e-11 73.9 39 84.6
MD10G1003200 Malus domestica HOM05D003883 ORTHO05D004605 1.0e-11 73.9 39 84.6
Nitab4.5_0000009g0400 Nicotiana tabacum HOM05D003883 ORTHO05D004605 1.0e-11 73.9 39 84.6
Solyc11g039950.3 Solanum lycopersicum HOM05D003883 ORTHO05D004605 1.0e-11 73.9 39 84.6
Sopen11g016790 Solanum pennellii HOM05D003883 ORTHO05D004605 1.0e-11 73.9 39 84.6
PGSC0003DMG400026862 Solanum tuberosum HOM05D003883 ORTHO05D004605 1.0e-11 73.9 39 84.6
AUR62013386 Chenopodium quinoa HOM05D003883 ORTHO05D004605 1.3e-11 73.6 39 84.6
Haze_13971 Corylus avellana HOM05D003883 ORTHO05D004605 1.3e-11 73.6 39 87.2
Gohir.A05G374200 Gossypium hirsutum HOM05D003883 ORTHO05D004605 1.3e-11 73.6 39 82.1
Gohir.D04G041300 Gossypium hirsutum HOM05D003883 ORTHO05D004605 1.3e-11 73.6 39 82.1
Gorai.012G046700 Gossypium raimondii HOM05D003883 ORTHO05D004605 1.3e-11 73.6 39 82.1
Ah.05g170410 Amaranthus hybridus HOM05D003883 ORTHO05D004605 1.7e-11 73.2 43 79.1
DCAR_001170 Daucus carota HOM05D003883 ORTHO05D004605 1.7e-11 73.2 39 82.1
DCAR_010106 Daucus carota HOM05D003883 ORTHO05D004605 1.7e-11 73.2 39 82.1
Glyma.10G214800 Glycine max HOM05D003883 ORTHO05D004605 1.7e-11 73.2 39 82.1
Glyma.20G177100 Glycine max HOM05D003883 ORTHO05D004605 1.7e-11 73.2 39 82.1
Lj5g0005523 Lotus japonicus HOM05D003883 ORTHO05D004605 1.7e-11 73.2 39 82.1
TWI12G1089 Tripterygium wilfordii HOM05D003883 ORTHO05D004605 1.7e-11 73.2 39 84.6
Ca_10599_v3 Cicer arietinum L. HOM05D003883 ORTHO05D004605 2.2e-11 72.8 39 84.6
Ciclev10022415m.g Citrus clementina HOM05D003883 ORTHO05D004605 2.2e-11 72.8 39 79.5
Migut.C01393 Erythranthe guttata HOM05D003883 ORTHO05D004605 2.2e-11 72.8 39 82.1
HanXRQChr05g0150991 Helianthus annuus HOM05D003883 ORTHO05D004605 2.2e-11 72.8 39 82.1
SalBow7G2433 Salvia bowleyana HOM05D003883 ORTHO05D004605 2.2e-11 72.8 39 82.1
arahy.Tifrunner.gnm1.ann1.6B58CR Arachis hypogaea HOM05D003883 ORTHO05D004605 2.9e-11 72.4 39 82.1
arahy.Tifrunner.gnm1.ann1.DBA4ID Arachis hypogaea HOM05D003883 ORTHO05D004605 2.9e-11 72.4 39 82.1
BcaC04g21018 Brassica carinata HOM05D003883 ORTHO05D004605 2.9e-11 72.4 39 82.1
A09p28820 Brassica napus HOM05D003883 ORTHO05D004605 2.9e-11 72.4 39 82.1
C09p36620 Brassica napus HOM05D003883 ORTHO05D004605 2.9e-11 72.4 39 82.1
BolC9t56494H Brassica oleracea HOM05D003883 ORTHO05D004605 2.9e-11 72.4 39 82.1
BraA09t38444Z Brassica rapa HOM05D003883 ORTHO05D004605 2.9e-11 72.4 39 82.1
COL.COLO4_25136 Corchorus olitorius HOM05D003883 ORTHO05D004605 2.9e-11 72.4 39 82.1
DCAR_027538 Daucus carota HOM05D003883 ORTHO05D004605 2.9e-11 72.4 39 79.5
Nitab4.5_0001202g0010 Nicotiana tabacum HOM05D003883 ORTHO05D004605 2.9e-11 72.4 39 84.6
Sp6g07310 Schrenkiella parvula HOM05D003883 ORTHO05D004605 2.9e-11 72.4 39 82.1
Sc10g0006520 Simmondsia chinensis HOM05D003883 ORTHO05D004605 2.9e-11 72.4 43 76.7
AL6G43920 Arabidopsis lyrata HOM05D003883 ORTHO05D004605 3.8e-11 72.0 39 82.1
Carub.0006s2868 Capsella rubella HOM05D003883 ORTHO05D004605 3.8e-11 72.0 39 82.1
Cfa008054 Carpinus fangiana HOM05D003883 ORTHO05D004605 3.8e-11 72.0 39 84.6
Duzib147G1304 Durio zibethinus HOM05D003883 ORTHO05D004605 3.8e-11 72.0 39 84.6
Phvul.007G091200 Phaseolus vulgaris HOM05D003883 ORTHO05D004605 3.8e-11 72.0 39 82.1
Lsat_1_v5_gn_6_111041 Lactuca sativa HOM05D003883 ORTHO05D004605 5.0e-11 71.6 39 79.5
Psat6g186320 Pisum sativum HOM05D003883 ORTHO05D004605 5.0e-11 71.6 39 82.1
CSS0035251 Camellia sinensis var. sinensis HOM05D003883 ORTHO05D004605 6.5e-11 71.2 39 84.6
CARHR261150 Cardamine hirsuta HOM05D003883 ORTHO05D004605 6.5e-11 71.2 39 79.5
Manes.18G112700 Manihot esculenta HOM05D003883 ORTHO05D004605 6.5e-11 71.2 39 84.6
Medtr1g096170 Medicago truncatula HOM05D003883 ORTHO05D004605 6.5e-11 71.2 39 82.1
PGR042G1493 Punica granatum HOM05D003883 ORTHO05D004605 8.4e-11 70.9 39 79.5
QL09p001675 Quercus lobata HOM05D003883 ORTHO05D004605 8.4e-11 70.9 39 79.5
Rhsim02G0081700 Rhododendron simsii HOM05D003883 ORTHO05D004605 8.4e-11 70.9 39 82.1
TPR.G1761 Trifolium pratense HOM05D003883 ORTHO05D004605 8.4e-11 70.9 48 70.8
EL10Ac1g01277 Beta vulgaris HOM05D003883 ORTHO05D004605 1.1e-10 70.5 39 79.5
ECA246G4775 Erigeron canadensis HOM05D003883 ORTHO05D004605 1.1e-10 70.5 39 76.9
Cc10_g13970 Coffea canephora HOM05D003883 ORTHO05D004605 1.4e-10 70.1 39 76.9
Cc10_g16020 Coffea canephora HOM05D003883 ORTHO05D004605 1.4e-10 70.1 39 76.9
Sed0024898 Sechium edule HOM05D003883 ORTHO05D004605 1.4e-10 70.1 39 82.1
Aqoxy5G01863 Aquilegia oxysepala HOM05D003883 ORTHO05D004605 1.9e-10 69.7 43 69.8
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 1.9e-10 69.7 39 76.9
PSO210G0567 Papaver somniferum HOM05D003883 ORTHO05D004605 1.9e-10 69.7 39 76.9
PSO761G0643 Papaver somniferum HOM05D003883 ORTHO05D004605 1.9e-10 69.7 39 76.9
Peaxi162Scf00078g00928 Petunia axillaris HOM05D003883 ORTHO05D004605 2.5e-10 69.3 39 74.4
MBI10_g20271_MAGBIO Magnolia biondii HOM05D003883 ORTHO05D004605 3.2e-10 68.9 39 76.9
SGA_v2.0_scaffold118G32634 Striga asiatica HOM05D003883 ORTHO05D004605 7.2e-10 67.8 39 74.4
TAR633G0350 Trochodendron aralioides HOM05D003883 ORTHO05D004605 7.2e-10 67.8 58 56.9
Actinidia29370 Actinidia chinensis HOM05D003883 ORTHO05D004605 9.3e-10 67.4 39 79.5
Nn5g27336 Nelumbo nucifera HOM05D003883 ORTHO05D004605 9.3e-10 67.4 39 82.1
RcHm_v2.0_Chr6g0280021 Rosa chinensis HOM05D003883 ORTHO05D004605 9.3e-10 67.4 38 81.6
SHI15221 Sapria himalayana HOM05D003883 ORTHO05D004605 9.3e-10 67.4 84 45.2
MBI17_g19026_MAGBIO Magnolia biondii HOM05D003883 ORTHO05D004605 1.2e-09 67.0 39 71.8
Os05g0427300 Oryza sativa ssp. japonica HOM05D003883 ORTHO05D004605 1.6e-09 66.6 39 76.9
SHI48034 Sapria himalayana HOM05D003883 ORTHO05D004605 1.6e-09 66.6 50 62.0
SHI49925 Sapria himalayana HOM05D003883 ORTHO05D004605 1.6e-09 66.6 50 64.0
MBI03_g20879_MAGBIO Magnolia biondii HOM05D003883 ORTHO05D004605 2.1e-09 66.2 39 76.9
SHI22734 Sapria himalayana HOM05D003883 ORTHO05D004605 2.7e-09 65.9 85 42.4
Sed0003271 Sechium edule HOM05D003883 ORTHO05D004605 2.7e-09 65.9 39 74.4
unitig_749.g13869 Utricularia gibba HOM05D003883 ORTHO05D004605 2.7e-09 65.9 39 71.8
SHI29471 Sapria himalayana HOM05D003883 ORTHO05D004605 3.5e-09 65.5 50 62.0
MSTRG.25500 Avicennia marina HOM05D003883 ORTHO05D004605 4.6e-09 65.1 39 76.9
ClCG08G000830 Citrullus lanatus HOM05D003883 ORTHO05D004605 4.6e-09 65.1 39 74.4
SHI16558 Sapria himalayana HOM05D003883 ORTHO05D004605 4.6e-09 65.1 50 62.0
SHI16809 Sapria himalayana HOM05D003883 ORTHO05D004605 4.6e-09 65.1 43 69.8
SHI15762 Sapria himalayana HOM05D003883 ORTHO05D004605 6.1e-09 64.7 50 62.0
SHI45198 Sapria himalayana HOM05D003883 ORTHO05D004605 6.1e-09 64.7 39 74.4
SHI31989 Sapria himalayana HOM05D003883 ORTHO05D004605 7.9e-09 64.3 49 63.3
Atru.chr13.2533 Acer truncatum HOM05D003883 ORTHO05D004605 1.0e-08 63.9 39 69.2
SHI03434 Sapria himalayana HOM05D003883 ORTHO05D004605 1.0e-08 63.9 52 61.5
SHI13269 Sapria himalayana HOM05D003883 ORTHO05D004605 1.3e-08 63.5 50 62.0
SHI16150 Sapria himalayana HOM05D003883 ORTHO05D004605 1.3e-08 63.5 50 60.0
SHI17604 Sapria himalayana HOM05D003883 ORTHO05D004605 1.3e-08 63.5 111 38.7
SHI19852 Sapria himalayana HOM05D003883 ORTHO05D004605 1.8e-08 63.2 39 71.8
ATR1089G108 Amborella trichopoda HOM05D003883 ORTHO05D004605 2.3e-08 62.8 39 69.2
MELO3C033524.2 Cucumis melo HOM05D003883 ORTHO05D004605 2.3e-08 62.8 39 71.8
CsaV3_5G039780 Cucumis sativus L. HOM05D003883 ORTHO05D004605 2.3e-08 62.8 39 71.8
SHI27587 Sapria himalayana HOM05D003883 ORTHO05D004605 3.9e-08 62.0 53 50.9
Nitab4.5_0005094g0010 Nicotiana tabacum HOM05D003883 ORTHO05D004605 5.1e-08 61.6 40 72.5
SHI22499 Sapria himalayana HOM05D003883 ORTHO05D004605 5.1e-08 61.6 47 55.3
SHI47005 Sapria himalayana HOM05D003883 ORTHO05D004605 5.1e-08 61.6 50 62.0
SEGI_10411 Sequoiadendron giganteum HOM05D003883 ORTHO05D004605 5.1e-08 61.6 39 69.2
Lsat_1_v5_gn_8_63781 Lactuca sativa HOM05D003883 ORTHO05D004605 1.1e-07 60.5 58 56.9
MBI18_g04721_MAGBIO Magnolia biondii HOM05D003883 ORTHO05D004605 1.1e-07 60.5 39 69.2
SHI40358 Sapria himalayana HOM05D003883 ORTHO05D004605 1.1e-07 60.5 39 66.7
SHI47059 Sapria himalayana HOM05D003883 ORTHO05D004605 1.1e-07 60.5 39 69.2
SHI51464 Sapria himalayana HOM05D003883 ORTHO05D004605 1.1e-07 60.5 54 53.7
ClCG08G001170 Citrullus lanatus HOM05D003883 ORTHO05D004605 1.5e-07 60.1 39 69.2
SHI50134 Sapria himalayana HOM05D003883 ORTHO05D004605 1.5e-07 60.1 50 58.0
SHI01632 Sapria himalayana HOM05D003883 ORTHO05D004605 1.9e-07 59.7 39 69.2
SMO239G0046 Selaginella moellendorffii HOM05D003883 ORTHO05D004605 1.9e-07 59.7 40 67.5
SMO307G0014 Selaginella moellendorffii HOM05D003883 ORTHO05D004605 1.9e-07 59.7 40 67.5
SHI12193 Sapria himalayana HOM05D000105 ORTHO05D004605 2.5e-07 59.3 39 66.7
SHI25304 Sapria himalayana HOM05D003883 ORTHO05D004605 2.5e-07 59.3 102 40.2
CDE04G3585 Ceratophyllum demersum HOM05D003883 ORTHO05D004605 3.3e-07 58.9 39 69.2
CsaV3_5G039770 Cucumis sativus L. HOM05D003883 ORTHO05D004605 3.3e-07 58.9 39 66.7
HPP92_004500 Vanilla planifolia HOM05D003883 ORTHO05D004605 3.3e-07 58.9 39 69.2
SHI53701 Sapria himalayana HOM05D003883 ORTHO05D004605 5.7e-07 58.2 39 66.7
SHI36014 Sapria himalayana HOM05D003883 ORTHO05D004605 7.4e-07 57.8 39 64.1
Mapoly0019s0080 Marchantia polymorpha HOM05D003883 ORTHO05D004605 9.7e-07 57.4 39 64.1
SHI09697 Sapria himalayana HOM05D003883 ORTHO05D004605 9.7e-07 57.4 48 56.2
AagrBONN_evm.TU.Sc2ySwM_228.826 Anthoceros agrestis HOM05D003883 ORTHO05D004605 1.3e-06 57.0 39 64.1
Zm00001eb145960 Zea mays HOM05D003883 ORTHO05D004605 2.2e-06 56.2 39 64.1
Solyc10g081990.1 Solanum lycopersicum HOM05D003883 ORTHO05D004605 3.7e-06 55.5 39 61.5
CBR_g955 Chara braunii HOM05D003883 ORTHO05D004605 4.8e-06 55.1 39 59.0
MELO3C022158.2 Cucumis melo HOM05D003883 ORTHO05D004605 8.2e-06 54.3 39 61.5
SHI34947 Sapria himalayana HOM05D003883 ORTHO05D004605 8.2e-06 54.3 39 61.5


User provided reference genes

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